Wall clock time and date at job start Tue Mar 31 2020 11:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00076 * 2 1 4 4 N 1.46497 * 109.47003 * 125.00050 * 3 2 1 5 5 C 1.46506 * 119.99849 * 273.89680 * 4 3 2 6 6 C 1.50702 * 109.47172 * 270.00379 * 5 4 3 7 7 H 1.07998 * 120.00211 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99583 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00427 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99777 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47144 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47437 * 119.99608 * 10 8 6 13 13 H 1.48503 * 109.46932 * 239.99895 * 10 8 6 14 14 C 1.34776 * 120.00502 * 93.90086 * 4 3 2 15 15 O 1.21276 * 120.00299 * 185.35372 * 14 4 3 16 16 C 1.50707 * 119.99767 * 5.35872 * 14 4 3 17 17 H 1.09004 * 109.67600 * 314.01471 * 16 14 4 18 18 C 1.53405 * 109.71190 * 74.55073 * 16 14 4 19 19 C 1.53082 * 108.28630 * 184.48259 * 18 16 14 20 20 C 1.50773 * 109.67167 * 311.79260 * 19 18 16 21 21 C 1.38510 * 118.76154 * 197.69709 * 20 19 18 22 22 C 1.38102 * 120.31803 * 180.15677 * 21 20 19 23 23 C 1.50706 * 120.00782 * 180.02562 * 22 21 20 24 24 C 1.38285 * 119.98536 * 0.02562 * 22 21 20 25 25 C 1.37976 * 119.95816 * 359.91541 * 24 22 21 26 26 C 1.38368 * 121.40921 * 17.73016 * 20 19 18 27 27 O 1.35846 * 121.81128 * 359.70029 * 26 20 19 28 28 H 1.08001 * 119.99646 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.00137 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99646 * 179.97438 * 2 1 3 31 31 H 1.08989 * 109.47189 * 4.99563 * 3 2 1 32 32 H 1.08998 * 109.47036 * 244.99807 * 3 2 1 33 33 H 1.08998 * 109.47231 * 30.00400 * 5 4 3 34 34 H 1.09000 * 109.46970 * 150.00036 * 5 4 3 35 35 H 0.96995 * 120.00131 * 180.02562 * 9 8 6 36 36 H 1.08995 * 109.70386 * 304.17880 * 18 16 14 37 37 H 1.09000 * 109.70215 * 64.78791 * 18 16 14 38 38 H 1.09000 * 109.43678 * 71.84927 * 19 18 16 39 39 H 1.08992 * 109.43934 * 191.77515 * 19 18 16 40 40 H 1.08001 * 119.83636 * 0.14473 * 21 20 19 41 41 H 1.09004 * 109.46457 * 90.00240 * 23 22 21 42 42 H 1.08992 * 109.46844 * 210.00228 * 23 22 21 43 43 H 1.09000 * 109.47200 * 330.00712 * 23 22 21 44 44 H 1.08002 * 120.02343 * 179.97438 * 24 22 21 45 45 H 1.07994 * 119.89064 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5345 1.7850 2.4467 6 6 2.7420 3.2729 2.5661 7 1 3.1732 3.8256 1.7445 8 6 2.3822 3.9284 3.7245 9 7 1.8576 3.2553 4.7251 10 14 2.6388 5.7728 3.8722 11 1 3.2401 6.2910 2.6172 12 1 1.3315 6.4372 4.1064 13 1 3.5492 6.0563 5.0107 14 6 4.2721 0.9396 0.9623 15 8 5.0161 0.8690 1.9174 16 6 4.7769 0.5889 -0.4137 17 1 4.0551 -0.0549 -0.9163 18 6 4.9834 1.8704 -1.2312 19 6 5.3868 1.4730 -2.6535 20 6 6.4882 0.4448 -2.6001 21 6 7.2487 0.2231 -3.7363 22 6 8.2635 -0.7135 -3.7242 23 6 9.0869 -0.9487 -4.9643 24 6 8.5239 -1.4355 -2.5740 25 6 7.7706 -1.2182 -1.4386 26 6 6.7485 -0.2739 -1.4467 27 8 6.0316 -0.0853 -0.3083 28 1 -0.5399 0.9354 -0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3587 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 1.4750 1.5557 2.5606 34 1 3.1022 1.2754 3.2252 35 1 1.6042 3.7165 5.5399 36 1 4.0560 2.4423 -1.2587 37 1 5.7730 2.4711 -0.7797 38 1 4.5242 1.0539 -3.1714 39 1 5.7395 2.3538 -3.1900 40 1 7.0468 0.7853 -4.6361 41 1 9.9494 -0.2820 -4.9595 42 1 9.4278 -1.9837 -4.9832 43 1 8.4792 -0.7501 -5.8471 44 1 9.3172 -2.1684 -2.5639 45 1 7.9752 -1.7823 -0.5408 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359402534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:09 Heat of formation + Delta-G solvation = -50.576396 kcal Electronic energy + Delta-G solvation = -26337.277620 eV Core-core repulsion = 22705.476221 eV Total energy + Delta-G solvation = -3631.801399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.08698 -40.57231 -38.62930 -37.35621 -35.45694 -35.07167 -33.74367 -33.16526 -31.72596 -29.83326 -28.32427 -27.01799 -26.61571 -24.86068 -24.24740 -23.27811 -21.39322 -20.61769 -20.20629 -19.06935 -18.61454 -18.14424 -17.71566 -16.99898 -16.42164 -16.20927 -16.12044 -15.79171 -15.32590 -15.28540 -14.90369 -14.87582 -14.47724 -14.27109 -14.22526 -14.15640 -13.79782 -13.44568 -13.33116 -13.25064 -12.94832 -12.88111 -12.62148 -12.52030 -12.31575 -12.28253 -12.21543 -12.05233 -11.89139 -11.67180 -11.40419 -10.66894 -10.63304 -10.34664 -9.73008 -9.58192 -8.96978 -8.24450 -6.39318 0.36498 0.43059 1.22788 1.35865 1.38775 1.49711 1.57980 1.75749 2.36658 2.65068 2.79325 3.06041 3.37704 3.46114 3.69203 3.79937 3.81032 4.01286 4.05718 4.17533 4.20891 4.23529 4.32141 4.41428 4.53988 4.59003 4.73807 4.79219 4.85882 4.93340 4.94643 4.96441 5.03071 5.03697 5.15582 5.18775 5.20759 5.37499 5.45543 5.47496 5.69152 5.69257 5.72036 5.88307 5.92027 6.02110 6.41045 6.59880 6.70130 7.19014 7.34841 8.83614 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.003401 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.911447 B = 8230.944284 C = 8848.905221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.193 4.193 3 C 0.125 3.875 4 N -0.587 5.587 5 C 0.264 3.736 6 C -0.543 4.543 7 H 0.059 0.941 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.969 3.031 11 H -0.263 1.263 12 H -0.268 1.268 13 H -0.285 1.285 14 C 0.506 3.494 15 O -0.584 6.584 16 C 0.086 3.914 17 H 0.117 0.883 18 C -0.147 4.147 19 C -0.067 4.067 20 C -0.164 4.164 21 C -0.085 4.085 22 C -0.123 4.123 23 C -0.105 4.105 24 C -0.090 4.090 25 C -0.164 4.164 26 C 0.095 3.905 27 O -0.325 6.325 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.028 0.972 34 H -0.006 1.006 35 H 0.267 0.733 36 H 0.109 0.891 37 H 0.059 0.941 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.154 0.846 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.150 0.850 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.718 -6.930 -24.516 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.212 4.212 3 C 0.003 3.997 4 N -0.318 5.318 5 C 0.143 3.857 6 C -0.581 4.581 7 H 0.077 0.923 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.793 3.207 11 H -0.187 1.187 12 H -0.193 1.193 13 H -0.211 1.211 14 C 0.293 3.707 15 O -0.463 6.463 16 C 0.027 3.973 17 H 0.135 0.865 18 C -0.185 4.185 19 C -0.103 4.103 20 C -0.165 4.165 21 C -0.103 4.103 22 C -0.123 4.123 23 C -0.162 4.162 24 C -0.108 4.108 25 C -0.183 4.183 26 C 0.050 3.950 27 O -0.240 6.240 28 H 0.123 0.877 29 H 0.134 0.866 30 H 0.125 0.875 31 H 0.107 0.893 32 H 0.129 0.871 33 H 0.046 0.954 34 H 0.012 0.988 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.078 0.922 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.171 0.829 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.167 0.833 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.061 -6.992 -23.646 25.392 hybrid contribution -0.041 0.726 1.348 1.532 sum 6.021 -6.265 -22.298 23.931 Atomic orbital electron populations 1.24073 0.95310 1.03119 0.97323 1.23295 0.97015 0.98095 1.02771 1.21062 0.92919 0.96813 0.88893 1.48069 1.08704 1.62624 1.12409 1.18770 0.93879 0.93755 0.79251 1.21728 1.41689 0.93531 1.01192 0.92287 1.25875 0.94514 1.03780 0.94962 1.70065 1.43018 1.38005 1.05708 0.85351 0.78204 0.78912 0.78247 1.18739 1.19280 1.21090 1.20627 0.82381 0.77380 0.90299 1.90657 1.57010 1.54582 1.44095 1.22281 0.85272 0.96487 0.93273 0.86535 1.22251 1.04394 0.95234 0.96583 1.20577 0.97014 0.97989 0.94765 1.20107 1.02208 1.00429 0.93764 1.21095 0.94168 0.97651 0.97374 1.20202 0.97966 0.97311 0.96823 1.20759 0.99024 1.02915 0.93481 1.21080 0.98811 0.99735 0.91204 1.20784 0.97760 0.99187 1.00557 1.19167 0.93907 0.96224 0.85675 1.86025 1.32254 1.74279 1.31401 0.87737 0.86597 0.87477 0.89340 0.87133 0.95377 0.98782 0.92385 0.87246 0.92185 0.87359 0.87145 0.82876 0.90656 0.90699 0.90335 0.83267 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 14.32 67.78 0.97 -2.79 16 2 C -0.19 -5.21 9.84 25.65 0.25 -4.95 16 3 C 0.12 3.80 5.32 85.63 0.46 4.26 16 4 N -0.59 -25.42 2.44 -830.51 -2.03 -27.45 16 5 C 0.26 14.47 5.22 85.63 0.45 14.92 16 6 C -0.54 -31.18 9.39 25.60 0.24 -30.94 16 7 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 8 C 0.01 0.45 5.46 84.66 0.46 0.91 16 9 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 10 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 13 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 14 C 0.51 22.92 6.99 87.66 0.61 23.53 16 15 O -0.58 -33.53 16.12 15.56 0.25 -33.28 16 16 C 0.09 2.90 2.33 29.99 0.07 2.97 16 17 H 0.12 3.18 7.26 -2.38 -0.02 3.16 16 18 C -0.15 -3.94 5.10 30.76 0.16 -3.78 16 19 C -0.07 -1.25 5.86 29.90 0.18 -1.08 16 20 C -0.16 -3.84 5.75 -19.75 -0.11 -3.95 16 21 C -0.09 -1.54 9.32 22.30 0.21 -1.33 16 22 C -0.12 -2.14 5.88 -19.88 -0.12 -2.26 16 23 C -0.11 -1.09 10.01 71.24 0.71 -0.38 16 24 C -0.09 -1.83 9.70 22.22 0.22 -1.62 16 25 C -0.16 -4.47 9.94 22.43 0.22 -4.24 16 26 C 0.09 2.88 6.47 22.52 0.15 3.03 16 27 O -0.33 -12.34 9.50 -73.24 -0.70 -13.04 16 28 H 0.10 2.36 7.84 -2.91 -0.02 2.33 16 29 H 0.12 2.24 8.06 -2.91 -0.02 2.22 16 30 H 0.11 2.84 8.06 -2.91 -0.02 2.81 16 31 H 0.09 2.74 7.75 -2.39 -0.02 2.72 16 32 H 0.11 2.56 4.62 -2.39 -0.01 2.55 16 33 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 34 H -0.01 -0.38 7.36 -2.39 -0.02 -0.40 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.11 2.56 6.37 -2.39 -0.02 2.55 16 37 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 43 H 0.08 0.61 8.09 -2.39 -0.02 0.59 16 44 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 45 H 0.12 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -80.02 373.50 5.93 -74.09 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.97 Total: 16.82 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 5.12 Total: -7.71 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -1.74 Total: -83.69 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -0.44 Total: -46.32 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -80.02 5.93 -74.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359402534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.513 kcal (2) G-P(sol) polarization free energy of solvation -80.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds