Wall clock time and date at job start Tue Mar 31 2020 10:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86796 * 119.99687 * 2 1 4 4 H 1.48498 * 109.47557 * 270.00181 * 3 2 1 5 5 H 1.48496 * 109.47318 * 30.00592 * 3 2 1 6 6 H 1.48500 * 109.46916 * 150.00346 * 3 2 1 7 7 C 1.38654 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99762 * 0.02562 * 7 2 1 9 9 O 1.34825 * 119.99848 * 179.97438 * 7 2 1 10 10 C 1.35752 * 116.99849 * 185.04412 * 9 7 2 11 11 C 1.38901 * 120.06991 * 354.17452 * 10 9 7 12 12 C 1.38078 * 119.93252 * 180.27278 * 11 10 9 13 13 C 1.38319 * 120.06786 * 0.02793 * 12 11 10 14 14 C 1.38289 * 120.14021 * 359.95305 * 13 12 11 15 15 C 1.50696 * 119.96468 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47535 * 270.02346 * 15 14 13 17 17 O 1.21286 * 119.99739 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00222 * 180.02562 * 16 15 14 19 19 C 1.46501 * 120.00219 * 179.97438 * 18 16 15 20 20 C 1.55931 * 115.92298 * 297.93642 * 19 18 16 21 21 C 1.54574 * 104.64451 * 199.96548 * 20 19 18 22 22 C 1.55924 * 104.64526 * 0.02562 * 21 20 19 23 23 C 1.55925 * 105.23125 * 289.52704 * 22 21 20 24 24 C 1.55929 * 115.91945 * 62.06093 * 19 18 16 25 25 C 1.56948 * 100.65239 * 33.77743 * 22 21 20 26 26 C 1.38119 * 120.06765 * 0.04529 * 14 13 12 27 27 H 0.96998 * 120.00188 * 359.97438 * 1 2 3 28 28 H 1.08007 * 120.03325 * 0.26035 * 11 10 9 29 29 H 1.07994 * 119.96384 * 179.97438 * 12 11 10 30 30 H 1.08001 * 119.93355 * 179.97438 * 13 12 11 31 31 H 1.09003 * 109.47279 * 30.02459 * 15 14 13 32 32 H 1.09007 * 109.46601 * 150.02144 * 15 14 13 33 33 H 0.97005 * 120.00174 * 359.97438 * 18 16 15 34 34 H 1.09000 * 110.39922 * 318.76180 * 20 19 18 35 35 H 1.09000 * 110.40005 * 81.17403 * 20 19 18 36 36 H 1.09003 * 110.40504 * 241.20966 * 21 20 19 37 37 H 1.08997 * 110.50062 * 118.83735 * 21 20 19 38 38 H 1.09004 * 115.92471 * 160.03273 * 22 21 20 39 39 H 1.08995 * 110.40579 * 189.25526 * 23 22 21 40 40 H 1.08998 * 110.40532 * 311.56685 * 23 22 21 41 41 H 1.09006 * 110.40079 * 278.82002 * 24 19 18 42 42 H 1.08997 * 110.40643 * 41.24029 * 24 19 18 43 43 H 1.09002 * 112.02676 * 189.69412 * 25 22 21 44 44 H 1.09001 * 112.02435 * 63.17756 * 25 22 21 45 45 H 1.07991 * 120.03485 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0466 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0014 9 8 3.3571 -1.2007 -0.0011 10 6 3.9734 -2.4056 -0.1079 11 6 3.2239 -3.5748 -0.0886 12 6 3.8541 -4.7990 -0.1918 13 6 5.2305 -4.8618 -0.3138 14 6 5.9796 -3.6995 -0.3337 15 6 7.4788 -3.7725 -0.4673 16 6 8.1020 -3.8526 0.9024 17 8 7.3979 -3.8511 1.8900 18 7 9.4416 -3.9259 1.0300 19 6 10.0475 -4.0033 2.3617 20 6 9.7957 -2.7814 3.2971 21 6 10.9116 -2.8689 4.3631 22 6 11.7330 -4.1349 3.9711 23 6 10.8012 -5.3433 4.2920 24 6 9.6684 -5.2546 3.2113 25 6 11.6146 -4.0846 2.4069 26 6 5.3550 -2.4719 -0.2309 27 1 -0.4850 0.8400 0.0004 28 1 2.1492 -3.5265 0.0073 29 1 3.2719 -5.7085 -0.1765 30 1 5.7213 -5.8205 -0.3940 31 1 7.7497 -4.6581 -1.0421 32 1 7.8416 -2.8815 -0.9801 33 1 10.0047 -3.9275 0.2402 34 1 9.8778 -1.8503 2.7364 35 1 8.8149 -2.8580 3.7665 36 1 10.4795 -2.9884 5.3567 37 1 11.5430 -1.9811 4.3285 38 1 12.7434 -4.1917 4.3760 39 1 11.3503 -6.2806 4.2031 40 1 10.3806 -5.2435 5.2925 41 1 8.6990 -5.1105 3.6884 42 1 9.6567 -6.1482 2.5874 43 1 11.9902 -4.9946 1.9390 44 1 12.0828 -3.1929 1.9899 45 1 5.9405 -1.5646 -0.2461 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368331906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:23 Heat of formation + Delta-G solvation = -41.120765 kcal Electronic energy + Delta-G solvation = -25849.073480 eV Core-core repulsion = 22217.682109 eV Total energy + Delta-G solvation = -3631.391372 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.78372 -39.38717 -38.56594 -36.55945 -33.94523 -32.39098 -32.05801 -30.60030 -29.45555 -28.69300 -28.00001 -26.66892 -25.10246 -22.39797 -21.95091 -21.41151 -20.37751 -20.12472 -18.71899 -17.69315 -17.35383 -16.83764 -16.56129 -15.64750 -15.26387 -15.13189 -15.06129 -14.48695 -14.17427 -13.81888 -13.69136 -13.40821 -12.96122 -12.81370 -12.66987 -12.49390 -12.41689 -12.11840 -12.00276 -11.79035 -11.58547 -11.36212 -11.26562 -11.18326 -11.15267 -10.79985 -10.76221 -10.67971 -10.58722 -10.33772 -10.11885 -9.63269 -9.34064 -9.03646 -8.82435 -8.09242 -7.30395 -6.36417 -4.02938 2.06061 2.34170 2.76487 3.10138 3.25661 3.28395 3.44504 4.07061 4.22444 4.24383 4.28328 4.51986 4.77672 4.85849 4.99014 5.01346 5.06339 5.11016 5.12013 5.16977 5.20432 5.28290 5.31556 5.39539 5.44423 5.53335 5.61242 5.73445 5.76458 5.80412 5.81076 5.89118 5.95896 6.07754 6.12405 6.17159 6.17822 6.30585 6.52812 6.58205 6.84322 7.15322 7.26611 7.36911 7.49173 7.66617 7.86135 8.09697 8.34588 8.99288 9.62773 10.71551 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.002941 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.976246 B = 9518.457633 C =10343.679023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.220 6.220 10 C 0.160 3.840 11 C -0.217 4.217 12 C -0.076 4.076 13 C -0.187 4.187 14 C -0.034 4.034 15 C -0.094 4.094 16 C 0.515 3.485 17 O -0.511 6.511 18 N -0.717 5.717 19 C 0.157 3.843 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.102 4.102 23 C -0.118 4.118 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.175 4.175 27 H 0.279 0.721 28 H 0.132 0.868 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.400 0.600 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.188 -9.584 2.964 27.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.463 4.463 8 H 0.123 0.877 9 O -0.125 6.125 10 C 0.109 3.891 11 C -0.236 4.236 12 C -0.095 4.095 13 C -0.206 4.206 14 C -0.035 4.035 15 C -0.134 4.134 16 C 0.301 3.699 17 O -0.384 6.384 18 N -0.369 5.369 19 C 0.070 3.930 20 C -0.163 4.163 21 C -0.156 4.156 22 C -0.120 4.120 23 C -0.156 4.156 24 C -0.161 4.161 25 C -0.162 4.162 26 C -0.194 4.194 27 H 0.089 0.911 28 H 0.150 0.850 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.234 0.766 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 24.495 -9.202 3.708 26.428 hybrid contribution 0.301 0.655 -0.402 0.825 sum 24.796 -8.548 3.306 26.435 Atomic orbital electron populations 1.69649 1.05538 1.28379 1.48494 1.24450 0.95010 0.98754 0.95802 0.86192 0.80392 0.81520 0.78877 1.19922 1.20818 1.18382 1.20765 0.76947 0.96603 1.52024 0.87668 1.83568 1.22546 1.25675 1.80721 1.19010 0.91513 0.85531 0.93069 1.21294 1.01121 0.91963 1.09270 1.20730 0.94141 0.96711 0.97874 1.20411 0.93900 0.96404 1.09919 1.18647 0.92009 0.92990 0.99815 1.20590 0.93881 1.04488 0.94427 1.20741 0.81460 0.75731 0.91920 1.90747 1.61067 1.46872 1.39714 1.45529 1.06887 1.76990 1.07510 1.22151 0.92128 0.95834 0.82898 1.22823 0.99695 0.97269 0.96512 1.22598 0.96733 0.97387 0.98859 1.23450 0.98274 0.95513 0.94791 1.22979 0.96084 0.97663 0.98861 1.23199 0.99289 0.96836 0.96803 1.23727 0.93930 1.01832 0.96759 1.19932 0.91967 0.96975 1.10511 0.91135 0.85020 0.87212 0.87786 0.88372 0.88331 0.76559 0.91891 0.90389 0.91458 0.91741 0.88175 0.91715 0.91463 0.90436 0.91930 0.90828 0.90822 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.04 13.96 55.48 0.77 -25.27 16 2 C 0.06 1.80 5.49 -17.51 -0.10 1.70 16 3 Si 0.90 22.23 28.62 -169.99 -4.86 17.37 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.26 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.39 -11.26 9.95 30.89 0.31 -10.95 16 8 H 0.11 3.11 5.44 -52.48 -0.29 2.83 16 9 O -0.22 -6.02 8.59 0.06 0.00 -6.02 16 10 C 0.16 3.89 6.65 -39.10 -0.26 3.63 16 11 C -0.22 -4.93 9.17 -39.39 -0.36 -5.29 16 12 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 13 C -0.19 -3.31 9.70 -39.53 -0.38 -3.69 16 14 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 15 C -0.09 -1.17 5.83 -29.04 -0.17 -1.34 16 16 C 0.52 7.07 7.57 -10.99 -0.08 6.98 16 17 O -0.51 -9.39 14.31 5.55 0.08 -9.31 16 18 N -0.72 -7.17 5.51 -42.78 -0.24 -7.40 16 19 C 0.16 1.57 1.37 -126.53 -0.17 1.39 16 20 C -0.12 -1.38 5.50 -24.34 -0.13 -1.52 16 21 C -0.12 -1.00 6.22 -24.34 -0.15 -1.15 16 22 C -0.10 -0.72 5.14 -85.36 -0.44 -1.16 16 23 C -0.12 -0.94 6.33 -23.11 -0.15 -1.09 16 24 C -0.12 -1.29 5.62 -23.10 -0.13 -1.42 16 25 C -0.12 -0.90 6.27 -22.43 -0.14 -1.04 16 26 C -0.17 -3.64 9.65 -39.39 -0.38 -4.02 16 27 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.13 3.11 5.64 -52.48 -0.30 2.81 16 29 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.10 0.94 8.09 -51.93 -0.42 0.52 16 32 H 0.10 1.03 8.08 -51.92 -0.42 0.61 16 33 H 0.40 2.68 8.76 -40.82 -0.36 2.32 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.09 7.40 -51.93 -0.38 0.70 16 36 H 0.07 0.57 7.88 -51.93 -0.41 0.16 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.54 7.88 -51.93 -0.41 0.13 16 41 H 0.08 1.03 7.40 -51.93 -0.38 0.64 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -33.30 363.19 -9.10 -42.39 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.73 Total: 4.65 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -3.60 Total: -21.88 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.54 Total: -32.67 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.08 Total: -15.33 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.86 Total: 17.37 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.30 -9.10 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368331906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.271 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds