Wall clock time and date at job start Tue Mar 31 2020 11:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37976 * 119.82778 * 2 1 4 4 C 1.39246 * 120.24227 * 179.97438 * 3 2 1 5 5 C 1.38925 * 118.87075 * 0.42022 * 4 3 2 6 6 C 1.37692 * 120.79321 * 359.43322 * 5 4 3 7 7 C 1.38247 * 119.82243 * 180.02562 * 2 1 3 8 8 C 1.50707 * 120.11652 * 359.84061 * 7 2 1 9 9 C 1.51645 * 107.02566 * 179.39942 * 5 4 3 10 10 H 1.09004 * 110.97048 * 102.47046 * 9 5 4 11 11 C 1.50703 * 110.94068 * 226.14425 * 9 5 4 12 12 O 1.21277 * 119.99907 * 353.98097 * 11 9 5 13 13 N 1.34774 * 119.99427 * 173.97280 * 11 9 5 14 14 C 1.46502 * 119.99700 * 180.02562 * 13 11 9 15 15 C 1.52994 * 109.47412 * 178.28208 * 14 13 11 16 16 C 1.50702 * 115.54866 * 65.13904 * 15 14 13 17 17 H 1.08006 * 119.99939 * 265.40424 * 16 15 14 18 18 C 1.37874 * 120.00185 * 85.41244 * 16 15 14 19 19 N 1.31515 * 119.99974 * 353.54659 * 18 16 15 20 20 Si 1.86799 * 120.00221 * 173.55653 * 18 16 15 21 21 H 1.48495 * 109.47171 * 59.99697 * 20 18 16 22 22 H 1.48496 * 109.47192 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46916 * 299.99249 * 20 18 16 24 24 C 1.53005 * 117.49850 * 279.47263 * 15 14 13 25 25 C 1.52998 * 117.50132 * 210.81268 * 15 14 13 26 26 C 1.54701 * 101.90903 * 344.30188 * 9 5 4 27 27 O 1.36131 * 129.88164 * 180.42933 * 4 3 2 28 28 H 1.09005 * 109.46933 * 269.97964 * 1 2 3 29 29 H 1.09004 * 109.47350 * 29.97473 * 1 2 3 30 30 H 1.08999 * 109.47442 * 149.97767 * 1 2 3 31 31 H 1.07997 * 119.87276 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.01302 * 180.33592 * 6 5 4 33 33 H 1.08992 * 109.47263 * 269.98026 * 8 7 2 34 34 H 1.09000 * 109.47040 * 29.98124 * 8 7 2 35 35 H 1.08994 * 109.46774 * 149.98171 * 8 7 2 36 36 H 0.96998 * 120.00480 * 0.02562 * 13 11 9 37 37 H 1.09004 * 109.46831 * 298.28368 * 14 13 11 38 38 H 1.09003 * 109.47464 * 58.27644 * 14 13 11 39 39 H 0.96998 * 120.00027 * 185.07030 * 19 18 16 40 40 H 1.08996 * 117.49765 * 359.97438 * 24 15 14 41 41 H 1.08993 * 117.49778 * 145.01910 * 24 15 14 42 42 H 1.09007 * 117.50024 * 214.98004 * 25 15 14 43 43 H 1.08995 * 117.49978 * 359.96879 * 25 15 14 44 44 H 1.08998 * 110.74680 * 267.03748 * 26 9 5 45 45 H 1.08999 * 110.74885 * 143.68544 * 26 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1970 0.0000 4 6 3.5857 1.2070 0.0005 5 6 4.2653 -0.0046 -0.0079 6 6 3.5785 -1.1980 -0.0049 7 6 2.1945 -1.1994 -0.0005 8 6 1.4396 -2.5037 0.0025 9 6 5.7471 0.3174 -0.0203 10 1 6.1837 0.1836 0.9695 11 6 6.4715 -0.5191 -1.0433 12 8 5.8799 -1.3928 -1.6411 13 7 7.7768 -0.2960 -1.2938 14 6 8.4810 -1.1088 -2.2887 15 6 9.9277 -0.6261 -2.4102 16 6 10.7800 -0.8112 -1.1812 17 1 10.8879 -0.0036 -0.4722 18 6 11.4222 -2.0114 -0.9619 19 7 11.1917 -3.0349 -1.7549 20 14 12.6194 -2.1837 0.4615 21 1 11.9111 -1.9172 1.7392 22 1 13.1711 -3.5623 0.4802 23 1 13.7275 -1.2089 0.2971 24 6 10.1898 0.6108 -3.2719 25 6 10.6098 -0.7737 -3.7717 26 6 5.7459 1.8101 -0.4269 27 8 4.4510 2.2579 0.0085 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6484 2.1294 0.0004 32 1 4.1196 -2.1327 -0.0060 33 1 1.2604 -2.8174 1.0308 34 1 0.4859 -2.3728 -0.5089 35 1 2.0265 -3.2643 -0.5123 36 1 8.2501 0.4027 -0.8155 37 1 8.4714 -2.1533 -1.9771 38 1 7.9837 -1.0131 -3.2540 39 1 11.5858 -3.8992 -1.5582 40 1 9.3315 1.0803 -3.7526 41 1 10.9788 1.2903 -2.9501 42 1 11.6752 -1.0045 -3.7786 43 1 10.0281 -1.2153 -4.5808 44 1 5.8481 1.9161 -1.5069 45 1 6.5364 2.3522 0.0920 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370698420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:04 Heat of formation + Delta-G solvation = -44.723099 kcal Electronic energy + Delta-G solvation = -26050.304886 eV Core-core repulsion = 22418.757305 eV Total energy + Delta-G solvation = -3631.547581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -42.46788 -40.35763 -39.12000 -38.46352 -35.05275 -34.26089 -33.97612 -32.93537 -32.01005 -28.38389 -27.78270 -27.27532 -27.08261 -24.37165 -23.29550 -22.96036 -21.65793 -21.38958 -20.83843 -18.67637 -18.17470 -17.93300 -17.45260 -16.77780 -16.62249 -16.45547 -16.15722 -15.80559 -15.36299 -15.19743 -15.00256 -14.73899 -14.56142 -14.28201 -13.99147 -13.68892 -13.55127 -13.49227 -13.19584 -13.07285 -12.94620 -12.92604 -12.79398 -12.78288 -12.39939 -12.15133 -12.05163 -11.73266 -11.52888 -11.49729 -10.96936 -10.87146 -10.46822 -10.08722 -9.89076 -9.70266 -8.96535 -8.10879 -6.24377 0.25216 0.38511 1.43067 1.44873 1.50880 1.57282 2.14640 2.25788 2.41974 2.73347 3.17351 3.17554 3.47139 3.49774 3.83368 3.87266 3.97558 4.03376 4.23097 4.28225 4.33007 4.36823 4.52865 4.54619 4.58759 4.63646 4.70720 4.74493 4.76199 4.81084 4.94819 4.98661 5.01847 5.04724 5.14281 5.24672 5.26297 5.32949 5.45052 5.53553 5.58402 5.64188 5.65454 5.73832 5.76866 6.18403 6.35191 6.68274 6.83549 7.28304 7.45714 8.96388 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.018986 B = 0.003123 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.424967 B = 8963.260895 C = 9299.782442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.053 4.053 3 C -0.146 4.146 4 C 0.087 3.913 5 C -0.175 4.175 6 C -0.059 4.059 7 C -0.128 4.128 8 C -0.108 4.108 9 C -0.096 4.096 10 H 0.138 0.862 11 C 0.515 3.485 12 O -0.581 6.581 13 N -0.693 5.693 14 C 0.180 3.820 15 C 0.007 3.993 16 C -0.506 4.506 17 H 0.067 0.933 18 C 0.025 3.975 19 N -0.908 5.908 20 Si 0.949 3.051 21 H -0.270 1.270 22 H -0.294 1.294 23 H -0.270 1.270 24 C -0.174 4.174 25 C -0.162 4.162 26 C 0.068 3.932 27 O -0.307 6.307 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.148 0.852 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.412 0.588 37 H 0.029 0.971 38 H 0.035 0.965 39 H 0.258 0.742 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.139 8.977 5.177 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.053 4.053 3 C -0.164 4.164 4 C 0.042 3.958 5 C -0.176 4.176 6 C -0.077 4.077 7 C -0.128 4.128 8 C -0.165 4.165 9 C -0.117 4.117 10 H 0.155 0.845 11 C 0.301 3.699 12 O -0.461 6.461 13 N -0.342 5.342 14 C 0.056 3.944 15 C 0.007 3.993 16 C -0.544 4.544 17 H 0.085 0.915 18 C -0.176 4.176 19 N -0.546 5.546 20 Si 0.775 3.225 21 H -0.195 1.195 22 H -0.220 1.220 23 H -0.195 1.195 24 C -0.212 4.212 25 C -0.200 4.200 26 C -0.007 4.007 27 O -0.221 6.221 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.165 0.835 32 H 0.126 0.874 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.248 0.752 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.452 8.414 4.724 20.823 hybrid contribution 1.739 -0.692 0.581 1.960 sum -16.713 7.722 5.305 19.160 Atomic orbital electron populations 1.20937 0.87901 1.04224 1.03789 1.19837 0.97852 0.90736 0.96855 1.20355 0.89142 0.99750 1.07169 1.19725 0.92208 0.85691 0.98147 1.20369 0.93567 0.94537 1.09154 1.20309 0.94028 0.96457 0.96937 1.19981 0.92468 0.96850 1.03524 1.20819 1.00185 0.92319 1.03139 1.21574 0.93097 0.96513 1.00541 0.84495 1.20541 0.82105 0.83990 0.83246 1.90652 1.67766 1.35204 1.52503 1.45831 1.09198 1.37586 1.41602 1.20566 0.91452 0.93349 0.89026 1.19028 0.91081 0.97695 0.91538 1.20663 1.27994 0.99096 1.06656 0.91502 1.25703 0.97654 0.95962 0.98246 1.70097 1.45053 1.00897 1.38514 0.85760 0.79817 0.76750 0.80176 1.19502 1.21961 1.19491 1.23020 1.02564 0.90579 1.04990 1.22435 0.99472 0.99905 0.98198 1.23987 0.84658 0.90431 1.01586 1.86787 1.20278 1.32334 1.82707 0.89377 0.90215 0.89777 0.83471 0.87354 0.90028 0.89181 0.92525 0.75166 0.95263 0.94696 0.93254 0.89235 0.89372 0.91849 0.91308 0.90284 0.83077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.59 71.24 0.68 -0.76 16 2 C -0.05 -1.13 5.87 -19.93 -0.12 -1.25 16 3 C -0.15 -3.44 9.71 22.45 0.22 -3.22 16 4 C 0.09 2.45 7.04 22.68 0.16 2.61 16 5 C -0.18 -5.41 5.44 -19.53 -0.11 -5.51 16 6 C -0.06 -1.83 8.71 22.18 0.19 -1.64 16 7 C -0.13 -3.18 5.89 -19.82 -0.12 -3.30 16 8 C -0.11 -2.00 9.61 71.24 0.68 -1.32 16 9 C -0.10 -2.73 3.52 -11.40 -0.04 -2.77 16 10 H 0.14 3.37 8.14 -2.38 -0.02 3.35 16 11 C 0.52 18.85 7.08 87.66 0.62 19.47 16 12 O -0.58 -26.09 15.00 -3.02 -0.05 -26.14 16 13 N -0.69 -25.38 5.42 -463.06 -2.51 -27.89 16 14 C 0.18 8.07 5.50 86.38 0.48 8.55 16 15 C 0.01 0.33 1.38 -52.93 -0.07 0.26 16 16 C -0.51 -25.09 8.63 25.60 0.22 -24.87 16 17 H 0.07 3.15 7.82 -2.91 -0.02 3.13 16 18 C 0.03 1.31 5.39 84.65 0.46 1.77 16 19 N -0.91 -50.87 12.91 21.45 0.28 -50.60 16 20 Si 0.95 41.47 29.55 68.60 2.03 43.50 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 C -0.17 -6.65 9.96 30.62 0.30 -6.35 16 25 C -0.16 -7.24 9.42 30.62 0.29 -6.95 16 26 C 0.07 1.57 7.50 72.56 0.54 2.11 16 27 O -0.31 -8.10 11.10 -95.04 -1.06 -9.15 16 28 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.08 0.84 8.08 -2.38 -0.02 0.82 16 30 H 0.08 0.91 5.94 -2.39 -0.01 0.89 16 31 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 32 H 0.11 3.69 7.64 -2.91 -0.02 3.66 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.25 5.94 -2.39 -0.01 1.23 16 35 H 0.06 1.16 8.09 -2.39 -0.02 1.14 16 36 H 0.41 12.98 8.36 -92.71 -0.78 12.21 16 37 H 0.03 1.55 8.14 -2.38 -0.02 1.54 16 38 H 0.03 1.56 8.09 -2.39 -0.02 1.54 16 39 H 0.26 14.08 8.32 -92.71 -0.77 13.31 16 40 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 42 H 0.06 3.07 8.14 -2.38 -0.02 3.05 16 43 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 44 H 0.08 1.86 7.91 -2.39 -0.02 1.84 16 45 H 0.15 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -66.51 373.08 3.31 -63.20 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.23 Total: 30.25 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 4.40 Total: -23.17 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -2.23 Total: -78.49 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -1.10 Total: -35.29 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -66.51 3.31 -63.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370698420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.476 kcal (2) G-P(sol) polarization free energy of solvation -66.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds