Wall clock time and date at job start Tue Mar 31 2020 10:37:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86793 * 120.00247 * 2 1
4 4 H 1.48500 * 109.47248 * 180.02562 * 3 2 1
5 5 H 1.48502 * 109.47163 * 300.00029 * 3 2 1
6 6 H 1.48498 * 109.47130 * 60.00050 * 3 2 1
7 7 C 1.37878 * 119.99759 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99860 * 179.97438 * 7 2 1
9 9 C 1.50704 * 120.00190 * 0.02562 * 7 2 1
10 10 C 1.53003 * 109.46991 * 180.02562 * 9 7 2
11 11 O 1.42902 * 109.46742 * 180.02562 * 10 9 7
12 12 C 1.35899 * 116.99726 * 179.97438 * 11 10 9
13 13 C 1.38804 * 120.02233 * 359.97377 * 12 11 10
14 14 C 1.38174 * 120.08699 * 180.02562 * 13 12 11
15 15 C 1.38159 * 120.12030 * 359.97438 * 14 13 12
16 16 C 1.38885 * 120.04251 * 359.76100 * 15 14 13
17 17 N 1.39929 * 120.04309 * 180.25655 * 16 15 14
18 18 C 1.34777 * 119.99921 * 213.57296 * 17 16 15
19 19 O 1.21284 * 120.00318 * 5.27375 * 18 17 16
20 20 C 1.50702 * 119.99884 * 185.26680 * 18 17 16
21 21 C 1.52996 * 119.29527 * 109.77283 * 20 18 17
22 22 C 1.52994 * 60.38073 * 111.30526 * 21 20 18
23 23 H 1.09006 * 119.30102 * 248.69219 * 22 21 20
24 24 C 1.54270 * 118.19899 * 93.61346 * 22 21 20
25 25 C 1.54889 * 104.19679 * 272.21663 * 24 22 21
26 26 C 1.54259 * 117.41394 * 315.43257 * 20 18 17
27 27 C 1.38582 * 120.01988 * 179.97438 * 12 11 10
28 28 H 0.97003 * 119.99788 * 359.97438 * 1 2 3
29 29 H 1.08994 * 109.46913 * 60.00047 * 9 7 2
30 30 H 1.08998 * 109.46561 * 299.99822 * 9 7 2
31 31 H 1.09001 * 109.47611 * 59.99812 * 10 9 7
32 32 H 1.08999 * 109.46708 * 299.99526 * 10 9 7
33 33 H 1.08002 * 119.95888 * 359.97438 * 13 12 11
34 34 H 1.08001 * 119.93864 * 180.02562 * 14 13 12
35 35 H 1.08000 * 119.97719 * 180.02562 * 15 14 13
36 36 H 0.96997 * 120.00049 * 33.57733 * 17 16 15
37 37 H 1.08998 * 117.46304 * 218.90514 * 21 20 18
38 38 H 1.09006 * 117.46293 * 3.73123 * 21 20 18
39 39 H 1.09003 * 110.48583 * 30.89429 * 24 22 21
40 40 H 1.08999 * 110.48562 * 153.53726 * 24 22 21
41 41 H 1.08992 * 110.76004 * 156.25767 * 25 24 22
42 42 H 1.09006 * 110.75394 * 279.44002 * 25 24 22
43 43 H 1.09000 * 110.49022 * 2.30193 * 26 20 18
44 44 H 1.09001 * 110.49262 * 124.95274 * 26 20 18
45 45 H 1.08003 * 120.06340 * 359.97438 * 27 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.7091 1.3462 -0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8905 2.3963 1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2509 -2.4992 -0.0017
10 6 2.2452 -3.6621 -0.0015
11 8 1.5306 -4.8997 -0.0032
12 6 2.2708 -6.0394 -0.0037
13 6 3.6570 -5.9673 -0.0032
14 6 4.4108 -7.1253 -0.0043
15 6 3.7875 -8.3583 -0.0054
16 6 2.4009 -8.4365 -0.0004
17 7 1.7697 -9.6853 0.0040
18 6 0.5955 -9.8491 -0.6371
19 8 0.1332 -8.9426 -1.2971
20 6 -0.1430 -11.1587 -0.5340
21 6 -1.4476 -11.2218 0.2628
22 6 -1.4822 -11.3812 -1.2584
23 1 -1.9346 -10.5980 -1.8667
24 6 -1.4352 -12.8081 -1.8431
25 6 0.0773 -13.1151 -1.9744
26 6 0.6822 -12.4532 -0.6851
27 6 1.6421 -7.2744 -0.0048
28 1 -0.4850 0.8401 0.0004
29 1 0.6247 -2.5563 -0.8919
30 1 0.6240 -2.5575 0.8880
31 1 2.8712 -3.6048 0.8890
32 1 2.8724 -3.6040 -0.8910
33 1 4.1470 -5.0049 -0.0028
34 1 5.4892 -7.0664 -0.0035
35 1 4.3790 -9.2619 -0.0058
36 1 2.1771 -10.4331 0.4683
37 1 -1.6258 -12.1122 0.8657
38 1 -1.8281 -10.2889 0.6789
39 1 -1.9103 -13.5149 -1.1629
40 1 -1.9163 -12.8357 -2.8208
41 1 0.2548 -14.1904 -1.9722
42 1 0.4871 -12.6594 -2.8759
43 1 1.7391 -12.2193 -0.8124
44 1 0.5355 -13.1022 0.1783
45 1 0.5636 -7.3325 -0.0048
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000421443646.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:37:45
Heat of formation + Delta-G solvation = -32.657995 kcal
Electronic energy + Delta-G solvation = -25072.493163 eV
Core-core repulsion = 21441.468765 eV
Total energy + Delta-G solvation = -3631.024399 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.09943 -39.77807 -38.55675 -36.99944 -34.59431 -33.32954 -31.97815 -30.87095
-29.99265 -29.15933 -28.39057 -25.09554 -24.25280 -23.00670 -22.28595 -21.92187
-20.86905 -20.30001 -19.46456 -18.31044 -17.39301 -16.39193 -16.10825 -15.76704
-15.68038 -15.35711 -15.27615 -14.87226 -14.64052 -14.36213 -13.84143 -13.58861
-13.52240 -13.31120 -12.98660 -12.71789 -12.31198 -12.22961 -11.78222 -11.68433
-11.60222 -11.49411 -11.42455 -11.33371 -10.93066 -10.80667 -10.73680 -10.52659
-10.30383 -10.12876 -9.80575 -9.78593 -9.62099 -9.25560 -8.43405 -8.23165
-7.80467 -6.07762 -4.12310 1.35224 1.65241 2.35495 2.76988 3.24362
3.28252 3.35100 3.38859 3.84317 3.98389 3.99439 4.19208 4.30715
4.42106 4.49608 4.77834 4.89265 4.99108 5.01124 5.08559 5.19951
5.22396 5.28585 5.32876 5.38104 5.38595 5.44348 5.49135 5.58661
5.65177 5.70182 5.78904 5.91196 5.97404 6.06006 6.07410 6.30196
6.37986 6.54516 6.61373 6.76990 6.99683 7.24747 7.54408 7.67899
7.84195 7.98049 8.10012 8.26716 8.93540 9.51782 11.03912
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.022672 B = 0.002302 C = 0.002132
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1234.729767 B =12160.819671 C =13131.665535
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.889 5.889
2 C 0.059 3.941
3 Si 0.899 3.101
4 H -0.272 1.272
5 H -0.282 1.282
6 H -0.283 1.283
7 C -0.525 4.525
8 H 0.059 0.941
9 C 0.024 3.976
10 C 0.065 3.935
11 O -0.312 6.312
12 C 0.165 3.835
13 C -0.226 4.226
14 C -0.061 4.061
15 C -0.197 4.197
16 C 0.178 3.822
17 N -0.668 5.668
18 C 0.552 3.448
19 O -0.508 6.508
20 C -0.183 4.183
21 C -0.121 4.121
22 C -0.124 4.124
23 H 0.122 0.878
24 C -0.097 4.097
25 C -0.122 4.122
26 C -0.086 4.086
27 C -0.164 4.164
28 H 0.263 0.737
29 H 0.028 0.972
30 H 0.028 0.972
31 H 0.051 0.949
32 H 0.051 0.949
33 H 0.132 0.868
34 H 0.125 0.875
35 H 0.121 0.879
36 H 0.410 0.590
37 H 0.104 0.896
38 H 0.105 0.895
39 H 0.072 0.928
40 H 0.075 0.925
41 H 0.072 0.928
42 H 0.071 0.929
43 H 0.073 0.927
44 H 0.078 0.922
45 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.087 -29.914 0.458 30.076
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.527 5.527
2 C -0.143 4.143
3 Si 0.726 3.274
4 H -0.196 1.196
5 H -0.208 1.208
6 H -0.209 1.209
7 C -0.563 4.563
8 H 0.077 0.923
9 C -0.013 4.013
10 C -0.009 4.009
11 O -0.225 6.225
12 C 0.117 3.883
13 C -0.245 4.245
14 C -0.080 4.080
15 C -0.217 4.217
16 C 0.085 3.915
17 N -0.313 5.313
18 C 0.340 3.660
19 O -0.382 6.382
20 C -0.187 4.187
21 C -0.158 4.158
22 C -0.142 4.142
23 H 0.140 0.860
24 C -0.135 4.135
25 C -0.160 4.160
26 C -0.124 4.124
27 C -0.185 4.185
28 H 0.072 0.928
29 H 0.047 0.953
30 H 0.046 0.954
31 H 0.070 0.930
32 H 0.070 0.930
33 H 0.150 0.850
34 H 0.143 0.857
35 H 0.139 0.861
36 H 0.246 0.754
37 H 0.122 0.878
38 H 0.124 0.876
39 H 0.091 0.909
40 H 0.093 0.907
41 H 0.090 0.910
42 H 0.090 0.910
43 H 0.092 0.908
44 H 0.096 0.904
45 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges 2.334 -29.130 -0.034 29.223
hybrid contribution 0.968 0.774 0.238 1.262
sum 3.302 -28.356 0.204 28.549
Atomic orbital electron populations
1.69992 1.06105 1.26831 1.49801 1.25002 0.94911 0.99406 0.94970
0.86426 0.79966 0.83264 0.77696 1.19642 1.20847 1.20855 1.21009
0.93070 0.90180 1.52060 0.92293 1.19138 0.94211 0.89016 0.98935
1.23353 0.97096 0.80750 0.99708 1.86193 1.36516 1.13142 1.86668
1.18947 0.89880 0.87272 0.92231 1.21386 0.93073 0.99971 1.10076
1.20660 0.99385 0.91238 0.96677 1.20608 0.92056 0.98279 1.10768
1.17292 0.91063 0.84164 0.99013 1.43391 1.22851 1.11226 1.53813
1.19514 0.80310 0.88053 0.78154 1.90791 1.66235 1.42542 1.38600
1.22346 0.90849 0.93931 1.11546 1.23166 0.94820 1.04047 0.93799
1.23424 0.97230 0.98965 0.94615 0.85962 1.21995 0.96491 0.93801
1.01170 1.23039 0.94851 1.00393 0.97708 1.22329 0.98455 0.92928
0.98695 1.20248 1.01076 0.88668 1.08507 0.92770 0.95337 0.95383
0.93029 0.93046 0.85013 0.85669 0.86125 0.75429 0.87788 0.87633
0.90935 0.90658 0.90952 0.91012 0.90818 0.90384 0.84392
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16
2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16
3 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16
4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16
5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16
8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16
9 C 0.02 0.65 5.34 -27.88 -0.15 0.51 16
10 C 0.06 1.45 4.68 37.16 0.17 1.62 16
11 O -0.31 -6.92 10.13 -19.42 -0.20 -7.12 16
12 C 0.16 3.12 6.68 -39.25 -0.26 2.86 16
13 C -0.23 -3.66 9.04 -39.40 -0.36 -4.02 16
14 C -0.06 -0.80 10.03 -39.63 -0.40 -1.20 16
15 C -0.20 -2.42 9.96 -39.37 -0.39 -2.81 16
16 C 0.18 2.53 6.28 -83.72 -0.53 2.00 16
17 N -0.67 -7.38 5.21 -9.88 -0.05 -7.43 16
18 C 0.55 6.98 7.16 -10.98 -0.08 6.90 16
19 O -0.51 -8.80 14.47 5.55 0.08 -8.72 16
20 C -0.18 -1.61 2.65 -154.55 -0.41 -2.02 16
21 C -0.12 -0.93 9.85 -26.74 -0.26 -1.19 16
22 C -0.12 -1.05 6.54 -89.50 -0.59 -1.64 16
23 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16
24 C -0.10 -0.59 6.63 -25.07 -0.17 -0.76 16
25 C -0.12 -0.71 6.96 -23.54 -0.16 -0.87 16
26 C -0.09 -0.51 6.33 -23.88 -0.15 -0.66 16
27 C -0.16 -2.91 8.59 -39.25 -0.34 -3.25 16
28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
29 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16
30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16
31 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16
32 H 0.05 1.09 7.66 -51.93 -0.40 0.69 16
33 H 0.13 2.07 6.29 -52.49 -0.33 1.74 16
34 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16
35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16
36 H 0.41 2.97 8.12 -40.82 -0.33 2.64 16
37 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16
38 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16
39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16
40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
41 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16
42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
43 H 0.07 0.40 7.46 -51.93 -0.39 0.01 16
44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
45 H 0.14 2.65 6.42 -52.48 -0.34 2.32 16
LS Contribution 372.45 15.07 5.61 5.61
Total: -1.00 -33.96 372.45 -10.11 -44.07
By element:
Atomic # 1 Polarization: 8.19 SS G_CDS: -6.80 Total: 1.40 kcal
Atomic # 6 Polarization: -13.67 SS G_CDS: -4.47 Total: -18.15 kcal
Atomic # 7 Polarization: -34.35 SS G_CDS: 0.68 Total: -33.66 kcal
Atomic # 8 Polarization: -15.72 SS G_CDS: -0.12 Total: -15.84 kcal
Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -33.96 -10.11 -44.07 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000421443646.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.412 kcal
(2) G-P(sol) polarization free energy of solvation -33.960 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.548 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.070 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.658 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds