Wall clock time and date at job start Tue Mar 31 2020 10:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00247 * 2 1 4 4 H 1.48500 * 109.47248 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47163 * 300.00029 * 3 2 1 6 6 H 1.48498 * 109.47130 * 60.00050 * 3 2 1 7 7 C 1.37878 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99860 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46991 * 180.02562 * 9 7 2 11 11 O 1.42902 * 109.46742 * 180.02562 * 10 9 7 12 12 C 1.35899 * 116.99726 * 179.97438 * 11 10 9 13 13 C 1.38804 * 120.02233 * 359.97377 * 12 11 10 14 14 C 1.38174 * 120.08699 * 180.02562 * 13 12 11 15 15 C 1.38159 * 120.12030 * 359.97438 * 14 13 12 16 16 C 1.38885 * 120.04251 * 359.76100 * 15 14 13 17 17 N 1.39929 * 120.04309 * 180.25655 * 16 15 14 18 18 C 1.34777 * 119.99921 * 213.57296 * 17 16 15 19 19 O 1.21284 * 120.00318 * 5.27375 * 18 17 16 20 20 C 1.50702 * 119.99884 * 185.26680 * 18 17 16 21 21 C 1.52996 * 119.29527 * 109.77283 * 20 18 17 22 22 C 1.52994 * 60.38073 * 111.30526 * 21 20 18 23 23 H 1.09006 * 119.30102 * 248.69219 * 22 21 20 24 24 C 1.54270 * 118.19899 * 93.61346 * 22 21 20 25 25 C 1.54889 * 104.19679 * 272.21663 * 24 22 21 26 26 C 1.54259 * 117.41394 * 315.43257 * 20 18 17 27 27 C 1.38582 * 120.01988 * 179.97438 * 12 11 10 28 28 H 0.97003 * 119.99788 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.46913 * 60.00047 * 9 7 2 30 30 H 1.08998 * 109.46561 * 299.99822 * 9 7 2 31 31 H 1.09001 * 109.47611 * 59.99812 * 10 9 7 32 32 H 1.08999 * 109.46708 * 299.99526 * 10 9 7 33 33 H 1.08002 * 119.95888 * 359.97438 * 13 12 11 34 34 H 1.08001 * 119.93864 * 180.02562 * 14 13 12 35 35 H 1.08000 * 119.97719 * 180.02562 * 15 14 13 36 36 H 0.96997 * 120.00049 * 33.57733 * 17 16 15 37 37 H 1.08998 * 117.46304 * 218.90514 * 21 20 18 38 38 H 1.09006 * 117.46293 * 3.73123 * 21 20 18 39 39 H 1.09003 * 110.48583 * 30.89429 * 24 22 21 40 40 H 1.08999 * 110.48562 * 153.53726 * 24 22 21 41 41 H 1.08992 * 110.76004 * 156.25767 * 25 24 22 42 42 H 1.09006 * 110.75394 * 279.44002 * 25 24 22 43 43 H 1.09000 * 110.49022 * 2.30193 * 26 20 18 44 44 H 1.09001 * 110.49262 * 124.95274 * 26 20 18 45 45 H 1.08003 * 120.06340 * 359.97438 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 8 1.5306 -4.8997 -0.0032 12 6 2.2708 -6.0394 -0.0037 13 6 3.6570 -5.9673 -0.0032 14 6 4.4108 -7.1253 -0.0043 15 6 3.7875 -8.3583 -0.0054 16 6 2.4009 -8.4365 -0.0004 17 7 1.7697 -9.6853 0.0040 18 6 0.5955 -9.8491 -0.6371 19 8 0.1332 -8.9426 -1.2971 20 6 -0.1430 -11.1587 -0.5340 21 6 -1.4476 -11.2218 0.2628 22 6 -1.4822 -11.3812 -1.2584 23 1 -1.9346 -10.5980 -1.8667 24 6 -1.4352 -12.8081 -1.8431 25 6 0.0773 -13.1151 -1.9744 26 6 0.6822 -12.4532 -0.6851 27 6 1.6421 -7.2744 -0.0048 28 1 -0.4850 0.8401 0.0004 29 1 0.6247 -2.5563 -0.8919 30 1 0.6240 -2.5575 0.8880 31 1 2.8712 -3.6048 0.8890 32 1 2.8724 -3.6040 -0.8910 33 1 4.1470 -5.0049 -0.0028 34 1 5.4892 -7.0664 -0.0035 35 1 4.3790 -9.2619 -0.0058 36 1 2.1771 -10.4331 0.4683 37 1 -1.6258 -12.1122 0.8657 38 1 -1.8281 -10.2889 0.6789 39 1 -1.9103 -13.5149 -1.1629 40 1 -1.9163 -12.8357 -2.8208 41 1 0.2548 -14.1904 -1.9722 42 1 0.4871 -12.6594 -2.8759 43 1 1.7391 -12.2193 -0.8124 44 1 0.5355 -13.1022 0.1783 45 1 0.5636 -7.3325 -0.0048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421443646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:45 Heat of formation + Delta-G solvation = -32.657995 kcal Electronic energy + Delta-G solvation = -25072.493163 eV Core-core repulsion = 21441.468765 eV Total energy + Delta-G solvation = -3631.024399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.09943 -39.77807 -38.55675 -36.99944 -34.59431 -33.32954 -31.97815 -30.87095 -29.99265 -29.15933 -28.39057 -25.09554 -24.25280 -23.00670 -22.28595 -21.92187 -20.86905 -20.30001 -19.46456 -18.31044 -17.39301 -16.39193 -16.10825 -15.76704 -15.68038 -15.35711 -15.27615 -14.87226 -14.64052 -14.36213 -13.84143 -13.58861 -13.52240 -13.31120 -12.98660 -12.71789 -12.31198 -12.22961 -11.78222 -11.68433 -11.60222 -11.49411 -11.42455 -11.33371 -10.93066 -10.80667 -10.73680 -10.52659 -10.30383 -10.12876 -9.80575 -9.78593 -9.62099 -9.25560 -8.43405 -8.23165 -7.80467 -6.07762 -4.12310 1.35224 1.65241 2.35495 2.76988 3.24362 3.28252 3.35100 3.38859 3.84317 3.98389 3.99439 4.19208 4.30715 4.42106 4.49608 4.77834 4.89265 4.99108 5.01124 5.08559 5.19951 5.22396 5.28585 5.32876 5.38104 5.38595 5.44348 5.49135 5.58661 5.65177 5.70182 5.78904 5.91196 5.97404 6.06006 6.07410 6.30196 6.37986 6.54516 6.61373 6.76990 6.99683 7.24747 7.54408 7.67899 7.84195 7.98049 8.10012 8.26716 8.93540 9.51782 11.03912 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.022672 B = 0.002302 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.729767 B =12160.819671 C =13131.665535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.065 3.935 11 O -0.312 6.312 12 C 0.165 3.835 13 C -0.226 4.226 14 C -0.061 4.061 15 C -0.197 4.197 16 C 0.178 3.822 17 N -0.668 5.668 18 C 0.552 3.448 19 O -0.508 6.508 20 C -0.183 4.183 21 C -0.121 4.121 22 C -0.124 4.124 23 H 0.122 0.878 24 C -0.097 4.097 25 C -0.122 4.122 26 C -0.086 4.086 27 C -0.164 4.164 28 H 0.263 0.737 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.410 0.590 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.087 -29.914 0.458 30.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.009 4.009 11 O -0.225 6.225 12 C 0.117 3.883 13 C -0.245 4.245 14 C -0.080 4.080 15 C -0.217 4.217 16 C 0.085 3.915 17 N -0.313 5.313 18 C 0.340 3.660 19 O -0.382 6.382 20 C -0.187 4.187 21 C -0.158 4.158 22 C -0.142 4.142 23 H 0.140 0.860 24 C -0.135 4.135 25 C -0.160 4.160 26 C -0.124 4.124 27 C -0.185 4.185 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.246 0.754 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.334 -29.130 -0.034 29.223 hybrid contribution 0.968 0.774 0.238 1.262 sum 3.302 -28.356 0.204 28.549 Atomic orbital electron populations 1.69992 1.06105 1.26831 1.49801 1.25002 0.94911 0.99406 0.94970 0.86426 0.79966 0.83264 0.77696 1.19642 1.20847 1.20855 1.21009 0.93070 0.90180 1.52060 0.92293 1.19138 0.94211 0.89016 0.98935 1.23353 0.97096 0.80750 0.99708 1.86193 1.36516 1.13142 1.86668 1.18947 0.89880 0.87272 0.92231 1.21386 0.93073 0.99971 1.10076 1.20660 0.99385 0.91238 0.96677 1.20608 0.92056 0.98279 1.10768 1.17292 0.91063 0.84164 0.99013 1.43391 1.22851 1.11226 1.53813 1.19514 0.80310 0.88053 0.78154 1.90791 1.66235 1.42542 1.38600 1.22346 0.90849 0.93931 1.11546 1.23166 0.94820 1.04047 0.93799 1.23424 0.97230 0.98965 0.94615 0.85962 1.21995 0.96491 0.93801 1.01170 1.23039 0.94851 1.00393 0.97708 1.22329 0.98455 0.92928 0.98695 1.20248 1.01076 0.88668 1.08507 0.92770 0.95337 0.95383 0.93029 0.93046 0.85013 0.85669 0.86125 0.75429 0.87788 0.87633 0.90935 0.90658 0.90952 0.91012 0.90818 0.90384 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.65 5.34 -27.88 -0.15 0.51 16 10 C 0.06 1.45 4.68 37.16 0.17 1.62 16 11 O -0.31 -6.92 10.13 -19.42 -0.20 -7.12 16 12 C 0.16 3.12 6.68 -39.25 -0.26 2.86 16 13 C -0.23 -3.66 9.04 -39.40 -0.36 -4.02 16 14 C -0.06 -0.80 10.03 -39.63 -0.40 -1.20 16 15 C -0.20 -2.42 9.96 -39.37 -0.39 -2.81 16 16 C 0.18 2.53 6.28 -83.72 -0.53 2.00 16 17 N -0.67 -7.38 5.21 -9.88 -0.05 -7.43 16 18 C 0.55 6.98 7.16 -10.98 -0.08 6.90 16 19 O -0.51 -8.80 14.47 5.55 0.08 -8.72 16 20 C -0.18 -1.61 2.65 -154.55 -0.41 -2.02 16 21 C -0.12 -0.93 9.85 -26.74 -0.26 -1.19 16 22 C -0.12 -1.05 6.54 -89.50 -0.59 -1.64 16 23 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 24 C -0.10 -0.59 6.63 -25.07 -0.17 -0.76 16 25 C -0.12 -0.71 6.96 -23.54 -0.16 -0.87 16 26 C -0.09 -0.51 6.33 -23.88 -0.15 -0.66 16 27 C -0.16 -2.91 8.59 -39.25 -0.34 -3.25 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 32 H 0.05 1.09 7.66 -51.93 -0.40 0.69 16 33 H 0.13 2.07 6.29 -52.49 -0.33 1.74 16 34 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.41 2.97 8.12 -40.82 -0.33 2.64 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.40 7.46 -51.93 -0.39 0.01 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.14 2.65 6.42 -52.48 -0.34 2.32 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -33.96 372.45 -10.11 -44.07 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.80 Total: 1.40 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -4.47 Total: -18.15 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.68 Total: -33.66 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.12 Total: -15.84 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.96 -10.11 -44.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421443646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.412 kcal (2) G-P(sol) polarization free energy of solvation -33.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds