Wall clock time and date at job start Tue Mar 31 2020 10:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00247 * 2 1 4 4 H 1.48500 * 109.47248 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47163 * 300.00029 * 3 2 1 6 6 H 1.48498 * 109.47130 * 60.00050 * 3 2 1 7 7 C 1.37878 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99860 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46991 * 180.02562 * 9 7 2 11 11 O 1.42902 * 109.46742 * 180.02562 * 10 9 7 12 12 C 1.35899 * 116.99726 * 179.97438 * 11 10 9 13 13 C 1.38804 * 120.02233 * 359.97377 * 12 11 10 14 14 C 1.38174 * 120.08699 * 180.02562 * 13 12 11 15 15 C 1.38159 * 120.12030 * 359.97438 * 14 13 12 16 16 C 1.38885 * 120.04251 * 359.76100 * 15 14 13 17 17 N 1.39929 * 120.04309 * 180.25655 * 16 15 14 18 18 C 1.34777 * 119.99921 * 213.57296 * 17 16 15 19 19 O 1.21284 * 120.00318 * 5.27375 * 18 17 16 20 20 C 1.50702 * 119.99884 * 185.26680 * 18 17 16 21 21 C 1.52996 * 119.29527 * 109.77283 * 20 18 17 22 22 C 1.52994 * 60.38073 * 111.30526 * 21 20 18 23 23 H 1.09006 * 119.30102 * 248.69219 * 22 21 20 24 24 C 1.54270 * 118.19899 * 93.61346 * 22 21 20 25 25 C 1.54889 * 104.19679 * 272.21663 * 24 22 21 26 26 C 1.54259 * 117.41394 * 315.43257 * 20 18 17 27 27 C 1.38582 * 120.01988 * 179.97438 * 12 11 10 28 28 H 0.97003 * 119.99788 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.46913 * 60.00047 * 9 7 2 30 30 H 1.08998 * 109.46561 * 299.99822 * 9 7 2 31 31 H 1.09001 * 109.47611 * 59.99812 * 10 9 7 32 32 H 1.08999 * 109.46708 * 299.99526 * 10 9 7 33 33 H 1.08002 * 119.95888 * 359.97438 * 13 12 11 34 34 H 1.08001 * 119.93864 * 180.02562 * 14 13 12 35 35 H 1.08000 * 119.97719 * 180.02562 * 15 14 13 36 36 H 0.96997 * 120.00049 * 33.57733 * 17 16 15 37 37 H 1.08998 * 117.46304 * 218.90514 * 21 20 18 38 38 H 1.09006 * 117.46293 * 3.73123 * 21 20 18 39 39 H 1.09003 * 110.48583 * 30.89429 * 24 22 21 40 40 H 1.08999 * 110.48562 * 153.53726 * 24 22 21 41 41 H 1.08992 * 110.76004 * 156.25767 * 25 24 22 42 42 H 1.09006 * 110.75394 * 279.44002 * 25 24 22 43 43 H 1.09000 * 110.49022 * 2.30193 * 26 20 18 44 44 H 1.09001 * 110.49262 * 124.95274 * 26 20 18 45 45 H 1.08003 * 120.06340 * 359.97438 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 8 1.5306 -4.8997 -0.0032 12 6 2.2708 -6.0394 -0.0037 13 6 3.6570 -5.9673 -0.0032 14 6 4.4108 -7.1253 -0.0043 15 6 3.7875 -8.3583 -0.0054 16 6 2.4009 -8.4365 -0.0004 17 7 1.7697 -9.6853 0.0040 18 6 0.5955 -9.8491 -0.6371 19 8 0.1332 -8.9426 -1.2971 20 6 -0.1430 -11.1587 -0.5340 21 6 -1.4476 -11.2218 0.2628 22 6 -1.4822 -11.3812 -1.2584 23 1 -1.9346 -10.5980 -1.8667 24 6 -1.4352 -12.8081 -1.8431 25 6 0.0773 -13.1151 -1.9744 26 6 0.6822 -12.4532 -0.6851 27 6 1.6421 -7.2744 -0.0048 28 1 -0.4850 0.8401 0.0004 29 1 0.6247 -2.5563 -0.8919 30 1 0.6240 -2.5575 0.8880 31 1 2.8712 -3.6048 0.8890 32 1 2.8724 -3.6040 -0.8910 33 1 4.1470 -5.0049 -0.0028 34 1 5.4892 -7.0664 -0.0035 35 1 4.3790 -9.2619 -0.0058 36 1 2.1771 -10.4331 0.4683 37 1 -1.6258 -12.1122 0.8657 38 1 -1.8281 -10.2889 0.6789 39 1 -1.9103 -13.5149 -1.1629 40 1 -1.9163 -12.8357 -2.8208 41 1 0.2548 -14.1904 -1.9722 42 1 0.4871 -12.6594 -2.8759 43 1 1.7391 -12.2193 -0.8124 44 1 0.5355 -13.1022 0.1783 45 1 0.5636 -7.3325 -0.0048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421443646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:44 Heat of formation + Delta-G solvation = -53.243189 kcal Electronic energy + Delta-G solvation = -25073.385804 eV Core-core repulsion = 21441.468765 eV Total energy + Delta-G solvation = -3631.917040 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.04580 -40.96465 -39.61834 -38.27779 -35.82204 -35.38699 -32.63994 -32.50957 -31.24903 -30.51496 -29.10527 -27.04812 -25.29081 -23.91092 -23.59365 -23.11362 -22.05973 -21.23541 -20.39909 -19.62168 -18.48740 -18.15175 -17.31484 -17.03524 -16.91657 -16.85887 -16.51064 -16.30310 -15.79751 -15.48095 -14.67079 -14.53582 -14.41759 -14.35776 -14.31313 -14.13135 -13.92241 -13.39386 -13.28030 -12.90552 -12.78818 -12.68999 -12.55551 -12.26195 -12.08989 -11.99814 -11.88153 -11.81609 -11.61035 -11.43451 -11.39731 -11.27173 -10.78263 -10.73531 -10.65829 -9.47953 -9.06398 -8.28892 -6.43372 0.16848 0.44052 1.37570 1.39347 1.41187 1.54753 1.81506 2.27100 2.49828 2.54767 2.78892 3.05363 3.41807 3.56471 3.60795 3.83605 3.87045 4.12807 4.16672 4.20115 4.21491 4.23367 4.38009 4.40623 4.45721 4.53234 4.60160 4.65994 4.69802 4.73430 4.77030 4.95614 4.98947 5.14643 5.17532 5.21656 5.24917 5.25251 5.29504 5.36629 5.41547 5.45422 5.47209 5.65593 5.86747 6.03720 6.33273 6.51887 6.71702 7.04157 7.26985 8.84890 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.022672 B = 0.002302 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.729767 B =12160.819671 C =13131.665535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.981 3.019 4 H -0.255 1.255 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.026 3.974 10 C 0.084 3.916 11 O -0.347 6.347 12 C 0.124 3.876 13 C -0.233 4.233 14 C -0.050 4.050 15 C -0.174 4.174 16 C 0.177 3.823 17 N -0.651 5.651 18 C 0.545 3.455 19 O -0.567 6.567 20 C -0.186 4.186 21 C -0.111 4.111 22 C -0.139 4.139 23 H 0.090 0.910 24 C -0.091 4.091 25 C -0.122 4.122 26 C -0.079 4.079 27 C -0.189 4.189 28 H 0.267 0.733 29 H -0.007 1.007 30 H -0.003 1.003 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.135 0.865 34 H 0.169 0.831 35 H 0.170 0.830 36 H 0.432 0.568 37 H 0.138 0.862 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.665 -32.772 1.218 33.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.201 4.201 3 Si 0.804 3.196 4 H -0.178 1.178 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.092 0.908 9 C -0.011 4.011 10 C 0.010 3.990 11 O -0.261 6.261 12 C 0.078 3.922 13 C -0.253 4.253 14 C -0.069 4.069 15 C -0.194 4.194 16 C 0.082 3.918 17 N -0.297 5.297 18 C 0.335 3.665 19 O -0.444 6.444 20 C -0.190 4.190 21 C -0.148 4.148 22 C -0.158 4.158 23 H 0.108 0.892 24 C -0.128 4.128 25 C -0.159 4.159 26 C -0.116 4.116 27 C -0.210 4.210 28 H 0.076 0.924 29 H 0.012 0.988 30 H 0.015 0.985 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.152 0.848 34 H 0.186 0.814 35 H 0.188 0.812 36 H 0.272 0.728 37 H 0.156 0.844 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.124 0.876 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.946 -32.057 0.751 32.612 hybrid contribution -0.188 1.533 -0.014 1.545 sum 5.758 -30.523 0.737 31.071 Atomic orbital electron populations 1.70149 1.08226 1.28225 1.50675 1.26128 0.95866 1.03970 0.94099 0.85164 0.79079 0.77485 0.77872 1.17832 1.20285 1.20123 1.21421 0.93916 0.90746 1.52063 0.90759 1.18991 0.94623 0.91718 0.95748 1.22913 0.95391 0.79852 1.00805 1.86098 1.37904 1.14002 1.88135 1.19246 0.91322 0.86174 0.95444 1.21545 0.91723 1.01683 1.10317 1.21172 1.01301 0.90099 0.94300 1.21142 0.91016 1.00001 1.07207 1.17468 0.92065 0.84083 0.98138 1.43306 1.22387 1.10820 1.53227 1.20328 0.80342 0.88838 0.77032 1.90776 1.67589 1.44846 1.41223 1.22456 0.91148 0.93205 1.12154 1.23244 0.93508 1.04493 0.93514 1.23502 0.97247 0.99958 0.95082 0.89169 1.22018 0.97266 0.92135 1.01399 1.23057 0.94133 1.01734 0.97011 1.22425 0.98219 0.91215 0.99776 1.20212 1.00027 0.90094 1.10686 0.92429 0.98831 0.98495 0.91533 0.92031 0.84759 0.81353 0.81231 0.72782 0.84397 0.89703 0.88796 0.90843 0.88482 0.92611 0.89990 0.87611 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.76 13.29 21.45 0.28 -58.48 16 2 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 3 Si 0.98 44.54 29.54 68.60 2.03 46.57 16 4 H -0.25 -10.78 7.11 99.48 0.71 -10.08 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 8 H 0.07 4.01 7.74 -2.91 -0.02 3.99 16 9 C 0.03 1.53 5.34 29.85 0.16 1.69 16 10 C 0.08 3.97 4.68 71.98 0.34 4.31 16 11 O -0.35 -16.66 10.13 -92.42 -0.94 -17.59 16 12 C 0.12 4.96 6.68 22.49 0.15 5.11 16 13 C -0.23 -7.40 9.04 22.39 0.20 -7.19 16 14 C -0.05 -1.14 10.03 22.24 0.22 -0.92 16 15 C -0.17 -3.59 9.96 22.41 0.22 -3.37 16 16 C 0.18 4.86 6.28 38.14 0.24 5.10 16 17 N -0.65 -13.58 5.21 -303.55 -1.58 -15.16 16 18 C 0.54 14.14 7.16 87.66 0.63 14.76 16 19 O -0.57 -21.41 14.47 -3.04 -0.04 -21.45 16 20 C -0.19 -3.13 2.65 -52.21 -0.14 -3.26 16 21 C -0.11 -1.63 9.85 30.59 0.30 -1.33 16 22 C -0.14 -2.42 6.54 -10.07 -0.07 -2.48 16 23 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 24 C -0.09 -0.96 6.63 31.67 0.21 -0.75 16 25 C -0.12 -1.09 6.96 32.66 0.23 -0.86 16 26 C -0.08 -0.68 6.33 32.44 0.21 -0.47 16 27 C -0.19 -7.13 8.59 22.48 0.19 -6.94 16 28 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 29 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.07 2.86 7.66 -2.39 -0.02 2.85 16 32 H 0.06 2.71 7.66 -2.39 -0.02 2.69 16 33 H 0.13 4.10 6.29 -2.91 -0.02 4.08 16 34 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.43 4.89 8.12 -92.71 -0.75 4.14 16 37 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.08 0.58 7.46 -2.39 -0.02 0.56 16 44 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.11 4.59 6.42 -2.91 -0.02 4.57 16 Total: -1.00 -81.90 372.45 3.78 -78.12 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.24 Total: 15.75 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 3.79 Total: -27.76 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -1.30 Total: -73.64 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -0.98 Total: -39.05 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -81.90 3.78 -78.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421443646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.880 kcal (2) G-P(sol) polarization free energy of solvation -81.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds