Wall clock time and date at job start Tue Mar 31 2020 11:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.68274 * 2 1 4 4 C 1.53412 * 109.68189 * 239.48414 * 2 1 3 5 5 C 1.53066 * 108.28131 * 175.61670 * 4 2 1 6 6 C 1.50761 * 109.69821 * 48.14922 * 5 4 2 7 7 C 1.38997 * 118.75947 * 162.32791 * 6 5 4 8 8 O 1.35899 * 119.89803 * 359.77644 * 7 6 5 9 9 C 1.42903 * 116.99918 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47011 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.47395 * 304.99896 * 10 9 8 12 12 C 1.47205 * 109.47413 * 65.00093 * 10 9 8 13 13 N 7.50265 * 155.63643 * 286.64160 * 2 1 3 14 14 C 1.52998 * 109.47273 * 185.00333 * 10 9 8 15 15 C 1.50700 * 109.47341 * 174.99862 * 14 10 9 16 16 H 1.07995 * 120.00119 * 359.97438 * 15 14 10 17 17 C 1.37887 * 119.99770 * 179.97438 * 15 14 10 18 18 N 1.31516 * 119.99963 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99737 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47355 * 89.99888 * 19 17 15 21 21 H 1.48504 * 109.47031 * 210.00318 * 19 17 15 22 22 H 1.48504 * 109.47232 * 330.00173 * 19 17 15 23 23 C 1.38609 * 120.20141 * 179.79927 * 7 6 5 24 24 C 1.38208 * 119.91711 * 359.97344 * 23 7 6 25 25 C 1.37991 * 120.01757 * 0.08284 * 24 23 7 26 26 C 1.38264 * 121.44067 * 342.25094 * 6 5 4 27 27 O 1.35847 * 121.79918 * 0.34689 * 26 6 5 28 28 H 1.09002 * 109.47153 * 59.99634 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99825 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46618 * 59.99919 * 3 2 1 32 32 H 1.08995 * 109.47388 * 179.97438 * 3 2 1 33 33 H 1.08991 * 109.47252 * 300.00196 * 3 2 1 34 34 H 1.08998 * 109.70353 * 295.27977 * 4 2 1 35 35 H 1.08997 * 109.70231 * 55.88348 * 4 2 1 36 36 H 1.09000 * 109.40127 * 288.09281 * 5 4 2 37 37 H 1.09000 * 109.41301 * 168.21437 * 5 4 2 38 38 H 1.09006 * 109.46972 * 300.00214 * 9 8 7 39 39 H 1.08995 * 109.46855 * 60.00509 * 9 8 7 40 40 H 1.09003 * 109.47048 * 295.00106 * 14 10 9 41 41 H 1.08998 * 109.47128 * 54.99480 * 14 10 9 42 42 H 0.97000 * 119.99692 * 179.97438 * 18 17 15 43 43 H 1.07999 * 120.04474 * 179.97438 * 23 7 6 44 44 H 1.07998 * 119.98512 * 180.10097 * 24 23 7 45 45 H 1.08000 * 119.82976 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0453 1.4406 0.0000 4 6 2.0467 -0.7335 -1.2444 5 6 3.5729 -0.6195 -1.2698 6 6 4.1317 -0.9759 0.0843 7 6 5.4798 -1.2982 0.1877 8 8 6.2648 -1.2919 -0.9216 9 6 7.6413 -1.6323 -0.7442 10 6 8.3599 -1.5707 -2.0935 11 1 7.8431 -2.2093 -2.8099 12 6 8.3621 -0.1832 -2.5853 13 7 8.3645 0.8864 -2.9654 14 6 9.8016 -2.0548 -1.9261 15 6 10.4724 -2.1108 -3.2744 16 1 9.9251 -1.8297 -4.1620 17 6 11.7850 -2.5210 -3.3748 18 7 12.4516 -2.8628 -2.2939 19 14 12.6167 -2.5897 -5.0460 20 1 13.2630 -1.2836 -5.3314 21 1 13.6452 -3.6610 -5.0433 22 1 11.6031 -2.8794 -6.0919 23 6 6.0258 -1.6264 1.4187 24 6 5.2278 -1.6328 2.5471 25 6 3.8888 -1.3144 2.4475 26 6 3.3342 -0.9859 1.2137 27 8 2.0111 -0.6830 1.1585 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6838 1.9557 0.8901 32 1 3.1352 1.4366 0.0005 33 1 1.6839 1.9557 -0.8899 34 1 1.7578 -1.7835 -1.1985 35 1 1.6285 -0.2757 -2.1409 36 1 3.8555 0.4027 -1.5213 37 1 3.9747 -1.3016 -2.0191 38 1 8.1040 -0.9269 -0.0539 39 1 7.7167 -2.6409 -0.3378 40 1 10.3436 -1.3652 -1.2790 41 1 9.8015 -3.0487 -1.4788 42 1 13.3749 -3.1517 -2.3646 43 1 7.0735 -1.8768 1.4961 44 1 5.6524 -1.8868 3.5071 45 1 3.2681 -1.3200 3.3313 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442544457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:19 Heat of formation + Delta-G solvation = -48.565189 kcal Electronic energy + Delta-G solvation = -25876.814213 eV Core-core repulsion = 22245.100027 eV Total energy + Delta-G solvation = -3631.714186 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.20502 -39.47842 -37.21568 -36.13021 -34.78262 -33.83325 -32.74097 -31.94678 -29.38080 -28.64428 -27.70887 -27.15570 -24.52990 -23.86122 -22.67318 -21.95363 -21.82270 -19.23613 -18.24061 -17.23735 -16.73897 -16.59670 -16.09709 -15.85925 -15.37327 -15.19792 -14.67655 -14.64596 -14.53534 -13.86193 -13.70127 -13.21940 -13.19529 -13.02165 -12.86890 -12.54782 -12.41880 -12.34673 -12.17861 -12.11568 -12.02186 -11.78533 -11.49525 -11.39756 -11.17423 -10.99757 -10.87824 -10.69452 -10.64844 -10.57747 -10.39512 -10.24923 -9.75525 -9.36852 -8.53261 -8.35382 -8.02985 -6.17658 -4.21471 1.30474 1.45235 2.97779 3.25080 3.25991 3.32728 3.36892 3.58049 3.62543 3.71060 4.34936 4.36005 4.43526 4.54753 4.64715 4.73143 4.87203 4.99078 5.01206 5.20452 5.20955 5.23186 5.27264 5.33096 5.36436 5.43078 5.44948 5.46681 5.51092 5.59167 5.71045 5.73341 5.78515 5.86786 5.94871 6.11321 6.15009 6.22929 6.30696 6.34876 6.45047 6.62644 7.28014 7.32254 7.37660 7.51027 7.77104 8.11727 8.36338 8.82475 9.44582 10.93265 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.002774 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.608676 B =10090.291250 C =10827.922042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.111 3.889 3 C -0.176 4.176 4 C -0.146 4.146 5 C -0.068 4.068 6 C -0.196 4.196 7 C 0.173 3.827 8 O -0.311 6.311 9 C 0.065 3.935 10 C 0.012 3.988 11 H 0.113 0.887 12 C 0.244 3.756 13 N -0.468 5.468 14 C 0.034 3.966 15 C -0.529 4.529 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.890 5.890 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.242 4.242 24 C -0.048 4.048 25 C -0.194 4.194 26 C 0.169 3.831 27 O -0.307 6.307 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.029 0.971 41 H 0.042 0.958 42 H 0.264 0.736 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.008 1.905 8.798 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.073 3.927 3 C -0.234 4.234 4 C -0.184 4.184 5 C -0.105 4.105 6 C -0.197 4.197 7 C 0.126 3.874 8 O -0.224 6.224 9 C -0.011 4.011 10 C -0.010 4.010 11 H 0.131 0.869 12 C -0.073 4.073 13 N -0.144 5.144 14 C -0.004 4.004 15 C -0.567 4.567 16 H 0.077 0.923 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.261 4.261 24 C -0.066 4.066 25 C -0.212 4.212 26 C 0.124 3.876 27 O -0.221 6.221 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.152 0.848 44 H 0.148 0.852 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -22.027 3.468 8.197 23.757 hybrid contribution 0.980 -0.506 -0.728 1.322 sum -21.047 2.962 7.469 22.529 Atomic orbital electron populations 1.21777 0.91487 1.03215 1.02966 1.21886 0.94863 0.91513 0.84405 1.22429 1.02754 0.95272 1.02897 1.22272 0.96477 1.01609 0.98018 1.20276 0.93792 1.02621 0.93767 1.18982 0.91965 1.13034 0.95751 1.18618 0.89654 0.93161 0.85967 1.86088 1.21699 1.83670 1.30934 1.23101 0.77886 1.01543 0.98520 1.19304 1.01704 0.85574 0.94390 0.86921 1.28881 0.91146 0.94555 0.92724 1.80972 1.10786 1.13117 1.09534 1.19173 0.84874 0.97546 0.98814 1.21072 0.97190 1.45760 0.92641 0.92301 1.24949 0.97265 0.94849 0.96831 1.69931 1.10646 1.44383 1.27903 0.86548 0.79372 0.77846 0.84076 1.20587 1.21014 1.19664 1.21229 1.01519 1.11016 0.92322 1.20671 0.92374 0.95493 0.98091 1.20425 0.95503 1.09862 0.95457 1.18293 0.82562 0.94344 0.92437 1.86021 1.20804 1.72589 1.42715 0.90432 0.91492 0.91513 0.91663 0.91312 0.90950 0.90539 0.89898 0.90606 0.89664 0.91296 0.89791 0.95258 0.93938 0.92649 0.84809 0.85238 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.88 37.16 0.33 -0.63 16 2 C 0.11 1.05 1.13 -90.41 -0.10 0.95 16 3 C -0.18 -1.61 8.16 37.16 0.30 -1.31 16 4 C -0.15 -1.39 5.10 -26.48 -0.14 -1.53 16 5 C -0.07 -0.81 4.82 -27.82 -0.13 -0.94 16 6 C -0.20 -2.64 5.19 -104.30 -0.54 -3.18 16 7 C 0.17 2.46 6.65 -39.16 -0.26 2.20 16 8 O -0.31 -4.75 9.02 -19.42 -0.18 -4.93 16 9 C 0.07 0.97 4.09 37.15 0.15 1.12 16 10 C 0.01 0.22 2.45 -93.41 -0.23 -0.01 16 11 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 12 C 0.24 5.03 13.71 -20.79 -0.28 4.74 16 13 N -0.47 -10.44 18.53 42.12 0.78 -9.66 16 14 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 15 C -0.53 -13.71 8.60 -34.44 -0.30 -14.01 16 16 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 19 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C -0.24 -3.08 9.03 -39.46 -0.36 -3.44 16 24 C -0.05 -0.54 10.03 -39.68 -0.40 -0.94 16 25 C -0.19 -2.28 9.93 -39.31 -0.39 -2.67 16 26 C 0.17 2.18 6.03 -39.21 -0.24 1.94 16 27 O -0.31 -3.67 9.67 -19.26 -0.19 -3.86 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.07 0.76 5.87 -51.93 -0.30 0.45 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.93 6.99 -51.93 -0.36 0.56 16 37 H 0.08 1.06 7.84 -51.93 -0.41 0.66 16 38 H 0.07 1.00 7.65 -51.93 -0.40 0.60 16 39 H 0.08 1.09 7.65 -51.93 -0.40 0.70 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.13 1.55 6.28 -52.49 -0.33 1.22 16 44 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 45 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -30.26 370.76 -7.88 -38.14 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.81 Total: -1.57 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -2.80 Total: -15.46 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 1.52 Total: -33.82 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.36 Total: -8.79 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.26 -7.88 -38.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442544457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.421 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds