Wall clock time and date at job start Tue Mar 31 2020 11:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38401 * 120.00786 * 2 1 4 4 C 1.38239 * 119.76481 * 180.02562 * 3 2 1 5 5 C 1.37981 * 120.35338 * 359.83559 * 4 3 2 6 6 C 1.39237 * 120.23601 * 0.02562 * 5 4 3 7 7 C 1.37693 * 120.01452 * 180.02562 * 2 1 3 8 8 C 1.51644 * 132.17638 * 0.34301 * 7 2 1 9 9 C 1.54702 * 101.92613 * 164.58899 * 8 7 2 10 10 H 1.09000 * 110.74889 * 143.80146 * 9 8 7 11 11 C 1.50703 * 110.74822 * 266.95814 * 9 8 7 12 12 O 1.21285 * 119.99831 * 108.70598 * 11 9 8 13 13 N 1.34774 * 120.00584 * 288.70787 * 11 9 8 14 14 C 1.46503 * 119.99631 * 4.35941 * 13 11 9 15 15 C 1.50706 * 109.47134 * 274.71320 * 14 13 11 16 16 H 1.07999 * 119.99821 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99798 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00205 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99664 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46990 * 90.00207 * 19 17 15 21 21 H 1.48502 * 109.47088 * 210.00341 * 19 17 15 22 22 H 1.48499 * 109.47223 * 330.00066 * 19 17 15 23 23 C 1.46491 * 120.00188 * 184.35941 * 13 11 9 24 24 C 1.53000 * 109.47085 * 84.77964 * 23 13 11 25 25 C 1.53000 * 117.51923 * 114.73604 * 24 23 13 26 26 C 1.52998 * 60.00055 * 107.47903 * 25 24 23 27 27 O 1.36134 * 129.89316 * 180.99478 * 6 5 4 28 28 H 1.08997 * 109.47210 * 269.97277 * 1 2 3 29 29 H 1.09001 * 109.47754 * 29.97438 * 1 2 3 30 30 H 1.09002 * 109.47270 * 149.97370 * 1 2 3 31 31 H 1.07997 * 120.11411 * 0.02562 * 3 2 1 32 32 H 1.08000 * 119.82741 * 179.81348 * 4 3 2 33 33 H 1.07997 * 119.87812 * 180.02562 * 5 4 3 34 34 H 1.09001 * 110.93614 * 46.43012 * 8 7 2 35 35 H 1.09003 * 110.96773 * 282.76191 * 8 7 2 36 36 H 1.08998 * 109.47034 * 34.71331 * 14 13 11 37 37 H 1.08997 * 109.47131 * 154.71085 * 14 13 11 38 38 H 0.96993 * 119.99967 * 179.97438 * 18 17 15 39 39 H 1.08992 * 109.47501 * 324.77698 * 23 13 11 40 40 H 1.09002 * 109.47076 * 204.77494 * 23 13 11 41 41 H 1.08992 * 115.55000 * 329.03123 * 24 23 13 42 42 H 1.08998 * 117.50134 * 214.96775 * 25 24 23 43 43 H 1.09005 * 117.50057 * 359.97438 * 25 24 23 44 44 H 1.09006 * 117.49703 * 252.50648 * 26 25 24 45 45 H 1.09002 * 117.49532 * 107.49366 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1985 0.0000 4 6 3.5815 1.1926 -0.0005 5 6 4.2737 -0.0010 0.0023 6 6 3.5848 -1.2110 0.0053 7 6 2.1957 -1.1923 -0.0005 8 6 1.7319 -2.6360 -0.0079 9 6 3.0255 -3.3853 -0.4060 10 1 3.0953 -4.3396 0.1162 11 6 3.0863 -3.5900 -1.8978 12 8 3.8798 -2.9599 -2.5645 13 7 2.2591 -4.4731 -2.4913 14 6 1.2365 -5.1637 -1.7015 15 6 1.8385 -6.3875 -1.0603 16 1 2.8786 -6.6271 -1.2250 17 6 1.0614 -7.2012 -0.2634 18 7 -0.2054 -6.9097 -0.0633 19 14 1.8074 -8.7185 0.5307 20 1 2.3583 -8.3600 1.8623 21 1 0.7598 -9.7586 0.6921 22 1 2.8971 -9.2431 -0.3309 23 6 2.3824 -4.7424 -3.9259 24 6 3.4549 -5.8094 -4.1542 25 6 3.0035 -7.1541 -4.7278 26 6 3.7906 -6.1753 -5.6014 27 8 4.0604 -2.4864 0.0265 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3635 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6611 2.1349 0.0004 32 1 4.1227 2.1273 -0.0036 33 1 5.3537 0.0034 0.0023 34 1 0.9486 -2.7897 -0.7501 35 1 1.3934 -2.9421 0.9820 36 1 0.8623 -4.4944 -0.9268 37 1 0.4145 -5.4616 -2.3523 38 1 -0.7521 -7.4823 0.4970 39 1 2.6649 -3.8264 -4.4446 40 1 1.4274 -5.0988 -4.3121 41 1 4.2699 -5.8190 -3.4307 42 1 3.5216 -8.0484 -4.3815 43 1 1.9421 -7.2790 -4.9423 44 1 3.2471 -5.6562 -6.3909 45 1 4.8266 -6.4257 -5.8299 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448907040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:37 Heat of formation + Delta-G solvation = -17.408193 kcal Electronic energy + Delta-G solvation = -27050.600945 eV Core-core repulsion = 23420.237827 eV Total energy + Delta-G solvation = -3630.363117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 2.97 seconds Orbital eigenvalues (eV) -41.18737 -38.95616 -37.40329 -36.59840 -34.84387 -33.10518 -32.55830 -31.00446 -29.62441 -27.84875 -26.76605 -26.02046 -23.95111 -22.67355 -21.97943 -21.88916 -20.67864 -20.46242 -18.94129 -16.97934 -16.64108 -16.54877 -16.28138 -15.62700 -15.38314 -15.01271 -14.63616 -14.30782 -14.09344 -13.62418 -13.47432 -13.34478 -13.06209 -12.80437 -12.50894 -12.38742 -12.24104 -12.09977 -12.04633 -11.60066 -11.42199 -11.29571 -11.17672 -11.13548 -11.08484 -10.91977 -10.78142 -10.53609 -10.32614 -9.97392 -9.76625 -9.44714 -9.13418 -8.63478 -8.46260 -7.84519 -7.79314 -6.25696 -4.32697 1.48736 1.57820 3.10865 3.18520 3.26690 3.30934 3.47724 3.86379 3.94488 4.25865 4.31669 4.70390 4.85778 5.01122 5.02430 5.10487 5.12133 5.22966 5.34606 5.36883 5.44183 5.51225 5.60903 5.69628 5.74944 5.79259 5.81205 5.92698 5.98568 6.06817 6.09329 6.13230 6.19543 6.29109 6.30484 6.46917 6.53745 6.59606 6.60056 6.73055 6.74069 6.83054 7.06366 7.41509 7.48001 7.69402 7.97027 8.18626 8.71061 8.88428 9.35555 10.80882 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.011938 B = 0.004906 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.955467 B = 5706.449857 C = 6936.623467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.037 4.037 3 C -0.159 4.159 4 C -0.086 4.086 5 C -0.146 4.146 6 C 0.125 3.875 7 C -0.173 4.173 8 C -0.092 4.092 9 C 0.070 3.930 10 H 0.155 0.845 11 C 0.504 3.496 12 O -0.553 6.553 13 N -0.588 5.588 14 C 0.226 3.774 15 C -0.536 4.536 16 H 0.063 0.937 17 C 0.068 3.932 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.154 3.846 24 C -0.147 4.147 25 C -0.167 4.167 26 C -0.188 4.188 27 O -0.281 6.281 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.045 0.955 37 H 0.039 0.961 38 H 0.266 0.734 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.305 9.882 -1.682 10.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.037 4.037 3 C -0.177 4.177 4 C -0.104 4.104 5 C -0.164 4.164 6 C 0.079 3.921 7 C -0.174 4.174 8 C -0.129 4.129 9 C 0.011 3.989 10 H 0.172 0.828 11 C 0.291 3.709 12 O -0.433 6.433 13 N -0.320 5.320 14 C 0.107 3.893 15 C -0.575 4.575 16 H 0.081 0.919 17 C -0.135 4.135 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.198 1.198 23 C 0.031 3.969 24 C -0.166 4.166 25 C -0.204 4.204 26 C -0.225 4.225 27 O -0.193 6.193 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.119 0.881 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.738 10.039 -1.874 10.359 hybrid contribution 0.218 -1.270 0.479 1.374 sum 1.955 8.769 -1.395 9.092 Atomic orbital electron populations 1.20796 0.91116 1.02885 1.02411 1.19074 0.95859 0.91130 0.97668 1.20826 0.94081 0.96928 1.05839 1.20750 0.94130 0.96781 0.98754 1.20185 1.00031 0.89061 1.07151 1.19596 0.91884 0.86095 0.94536 1.20728 0.93785 0.95291 1.07568 1.21774 0.97488 0.89308 1.04340 1.23420 0.85898 0.95642 0.93938 0.82754 1.20583 0.80912 0.79756 0.89648 1.90637 1.38830 1.48489 1.65313 1.48146 1.34546 1.40604 1.08705 1.19714 0.86050 0.92386 0.91168 1.21463 0.97430 1.08870 1.29728 0.91902 1.24909 0.94692 0.97812 0.96121 1.69904 1.05963 1.38703 1.38208 0.86566 0.79015 0.82571 0.79818 1.20421 1.21081 1.19750 1.20849 0.97276 0.96880 0.81893 1.22598 1.01367 0.97006 0.95647 1.22909 1.00271 0.93813 1.03438 1.22925 1.00726 1.04778 0.94097 1.86896 1.39040 1.13226 1.80155 0.90990 0.91602 0.91224 0.85917 0.85581 0.85789 0.88135 0.88001 0.93770 0.94320 0.92466 0.90958 0.90622 0.88125 0.89325 0.88826 0.89219 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.91 36.00 0.36 -1.00 16 2 C -0.04 -0.54 5.87 -104.76 -0.61 -1.16 16 3 C -0.16 -2.06 9.73 -39.52 -0.38 -2.44 16 4 C -0.09 -1.13 10.02 -39.68 -0.40 -1.52 16 5 C -0.15 -2.28 10.06 -39.30 -0.40 -2.68 16 6 C 0.12 2.28 6.81 -38.96 -0.27 2.02 16 7 C -0.17 -2.95 6.06 -104.10 -0.63 -3.58 16 8 C -0.09 -1.60 5.01 -26.52 -0.13 -1.73 16 9 C 0.07 1.38 3.25 -26.99 -0.09 1.29 16 10 H 0.16 3.08 7.21 -51.93 -0.37 2.71 16 11 C 0.50 10.75 6.87 -10.99 -0.08 10.68 16 12 O -0.55 -13.11 16.08 -13.49 -0.22 -13.33 16 13 N -0.59 -12.02 2.48 -175.06 -0.43 -12.45 16 14 C 0.23 4.99 4.82 -5.19 -0.02 4.97 16 15 C -0.54 -12.99 8.48 -34.44 -0.29 -13.29 16 16 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 17 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -23.10 13.29 55.43 0.74 -22.36 16 19 Si 0.89 19.81 29.54 -169.99 -5.02 14.79 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 21 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 C 0.15 2.83 5.72 -4.05 -0.02 2.80 16 24 C -0.15 -2.60 5.98 -90.62 -0.54 -3.14 16 25 C -0.17 -2.66 10.18 -26.73 -0.27 -2.93 16 26 C -0.19 -2.71 10.25 -26.73 -0.27 -2.98 16 27 O -0.28 -5.66 10.43 -39.21 -0.41 -6.07 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.07 0.86 7.57 -51.93 -0.39 0.47 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.10 1.76 6.04 -51.93 -0.31 1.45 16 35 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 36 H 0.04 0.97 4.63 -51.93 -0.24 0.73 16 37 H 0.04 0.90 7.80 -51.93 -0.40 0.50 16 38 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 39 H 0.07 1.32 7.52 -51.93 -0.39 0.93 16 40 H 0.08 1.28 7.53 -51.93 -0.39 0.89 16 41 H 0.10 2.00 8.14 -51.93 -0.42 1.58 16 42 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.09 1.45 8.04 -51.93 -0.42 1.03 16 44 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -28.73 371.17 -10.60 -39.33 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.70 Total: 7.59 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -4.15 Total: -13.10 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.30 Total: -34.81 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.63 Total: -19.40 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.73 -10.60 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448907040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.924 kcal (2) G-P(sol) polarization free energy of solvation -28.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds