Wall clock time and date at job start Tue Mar 31 2020 11:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38401 * 120.00786 * 2 1 4 4 C 1.38239 * 119.76481 * 180.02562 * 3 2 1 5 5 C 1.37981 * 120.35338 * 359.83559 * 4 3 2 6 6 C 1.39237 * 120.23601 * 0.02562 * 5 4 3 7 7 C 1.37693 * 120.01452 * 180.02562 * 2 1 3 8 8 C 1.51644 * 132.17638 * 0.34301 * 7 2 1 9 9 C 1.54702 * 101.92613 * 164.58899 * 8 7 2 10 10 H 1.09000 * 110.74889 * 143.80146 * 9 8 7 11 11 C 1.50703 * 110.74822 * 266.95814 * 9 8 7 12 12 O 1.21285 * 119.99831 * 108.70598 * 11 9 8 13 13 N 1.34774 * 120.00584 * 288.70787 * 11 9 8 14 14 C 1.46503 * 119.99631 * 4.35941 * 13 11 9 15 15 C 1.50706 * 109.47134 * 274.71320 * 14 13 11 16 16 H 1.07999 * 119.99821 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99798 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00205 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99664 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46990 * 90.00207 * 19 17 15 21 21 H 1.48502 * 109.47088 * 210.00341 * 19 17 15 22 22 H 1.48499 * 109.47223 * 330.00066 * 19 17 15 23 23 C 1.46491 * 120.00188 * 184.35941 * 13 11 9 24 24 C 1.53000 * 109.47085 * 84.77964 * 23 13 11 25 25 C 1.53000 * 117.51923 * 114.73604 * 24 23 13 26 26 C 1.52998 * 60.00055 * 107.47903 * 25 24 23 27 27 O 1.36134 * 129.89316 * 180.99478 * 6 5 4 28 28 H 1.08997 * 109.47210 * 269.97277 * 1 2 3 29 29 H 1.09001 * 109.47754 * 29.97438 * 1 2 3 30 30 H 1.09002 * 109.47270 * 149.97370 * 1 2 3 31 31 H 1.07997 * 120.11411 * 0.02562 * 3 2 1 32 32 H 1.08000 * 119.82741 * 179.81348 * 4 3 2 33 33 H 1.07997 * 119.87812 * 180.02562 * 5 4 3 34 34 H 1.09001 * 110.93614 * 46.43012 * 8 7 2 35 35 H 1.09003 * 110.96773 * 282.76191 * 8 7 2 36 36 H 1.08998 * 109.47034 * 34.71331 * 14 13 11 37 37 H 1.08997 * 109.47131 * 154.71085 * 14 13 11 38 38 H 0.96993 * 119.99967 * 179.97438 * 18 17 15 39 39 H 1.08992 * 109.47501 * 324.77698 * 23 13 11 40 40 H 1.09002 * 109.47076 * 204.77494 * 23 13 11 41 41 H 1.08992 * 115.55000 * 329.03123 * 24 23 13 42 42 H 1.08998 * 117.50134 * 214.96775 * 25 24 23 43 43 H 1.09005 * 117.50057 * 359.97438 * 25 24 23 44 44 H 1.09006 * 117.49703 * 252.50648 * 26 25 24 45 45 H 1.09002 * 117.49532 * 107.49366 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1985 0.0000 4 6 3.5815 1.1926 -0.0005 5 6 4.2737 -0.0010 0.0023 6 6 3.5848 -1.2110 0.0053 7 6 2.1957 -1.1923 -0.0005 8 6 1.7319 -2.6360 -0.0079 9 6 3.0255 -3.3853 -0.4060 10 1 3.0953 -4.3396 0.1162 11 6 3.0863 -3.5900 -1.8978 12 8 3.8798 -2.9599 -2.5645 13 7 2.2591 -4.4731 -2.4913 14 6 1.2365 -5.1637 -1.7015 15 6 1.8385 -6.3875 -1.0603 16 1 2.8786 -6.6271 -1.2250 17 6 1.0614 -7.2012 -0.2634 18 7 -0.2054 -6.9097 -0.0633 19 14 1.8074 -8.7185 0.5307 20 1 2.3583 -8.3600 1.8623 21 1 0.7598 -9.7586 0.6921 22 1 2.8971 -9.2431 -0.3309 23 6 2.3824 -4.7424 -3.9259 24 6 3.4549 -5.8094 -4.1542 25 6 3.0035 -7.1541 -4.7278 26 6 3.7906 -6.1753 -5.6014 27 8 4.0604 -2.4864 0.0265 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3635 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6611 2.1349 0.0004 32 1 4.1227 2.1273 -0.0036 33 1 5.3537 0.0034 0.0023 34 1 0.9486 -2.7897 -0.7501 35 1 1.3934 -2.9421 0.9820 36 1 0.8623 -4.4944 -0.9268 37 1 0.4145 -5.4616 -2.3523 38 1 -0.7521 -7.4823 0.4970 39 1 2.6649 -3.8264 -4.4446 40 1 1.4274 -5.0988 -4.3121 41 1 4.2699 -5.8190 -3.4307 42 1 3.5216 -8.0484 -4.3815 43 1 1.9421 -7.2790 -4.9423 44 1 3.2471 -5.6562 -6.3909 45 1 4.8266 -6.4257 -5.8299 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448907040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:34 Heat of formation + Delta-G solvation = -29.883876 kcal Electronic energy + Delta-G solvation = -27051.141931 eV Core-core repulsion = 23420.237827 eV Total energy + Delta-G solvation = -3630.904104 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -42.58342 -40.48917 -38.66893 -38.01730 -36.55714 -34.48105 -34.26606 -32.26684 -30.93945 -29.56681 -28.10032 -27.33149 -25.57197 -24.32814 -23.21551 -23.10227 -21.88847 -21.87543 -20.49967 -18.74785 -18.24819 -18.06736 -17.67866 -17.02649 -16.69503 -16.52838 -16.30546 -15.80176 -15.46518 -14.87407 -14.68395 -14.65048 -14.44940 -14.30289 -13.98884 -13.85699 -13.63224 -13.55500 -13.30034 -13.10763 -13.00579 -12.69179 -12.66825 -12.47167 -12.40547 -12.34102 -12.30401 -12.10406 -11.72126 -11.63019 -11.34031 -10.84073 -10.76137 -10.52329 -9.61017 -9.55677 -9.08389 -8.19425 -6.31021 0.34035 0.39967 1.40219 1.42979 1.47109 1.53432 1.98595 2.36190 2.44957 2.76861 2.98213 3.11692 3.39941 3.44602 3.56597 3.85352 3.87056 4.02326 4.11048 4.12147 4.22477 4.31521 4.34978 4.47002 4.53732 4.60517 4.66232 4.70396 4.71908 4.78091 4.82351 4.85118 4.91405 4.94729 5.03104 5.19756 5.25080 5.26735 5.27754 5.40778 5.47112 5.60374 5.65807 5.71530 5.81004 6.06552 6.20513 6.44472 6.79588 7.16262 7.40197 8.86285 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.011938 B = 0.004906 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.955467 B = 5706.449857 C = 6936.623467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.045 4.045 3 C -0.150 4.150 4 C -0.078 4.078 5 C -0.160 4.160 6 C 0.082 3.918 7 C -0.191 4.191 8 C -0.082 4.082 9 C 0.069 3.931 10 H 0.143 0.857 11 C 0.503 3.497 12 O -0.581 6.581 13 N -0.586 5.586 14 C 0.239 3.761 15 C -0.537 4.537 16 H 0.049 0.951 17 C 0.032 3.968 18 N -0.913 5.913 19 Si 0.944 3.056 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.275 1.275 23 C 0.152 3.848 24 C -0.176 4.176 25 C -0.167 4.167 26 C -0.157 4.157 27 O -0.303 6.303 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.131 0.869 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.046 0.954 37 H 0.028 0.972 38 H 0.268 0.732 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 11.460 -2.073 11.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.045 4.045 3 C -0.168 4.168 4 C -0.096 4.096 5 C -0.178 4.178 6 C 0.037 3.963 7 C -0.192 4.192 8 C -0.119 4.119 9 C 0.010 3.990 10 H 0.160 0.840 11 C 0.291 3.709 12 O -0.463 6.463 13 N -0.317 5.317 14 C 0.119 3.881 15 C -0.576 4.576 16 H 0.068 0.932 17 C -0.169 4.169 18 N -0.552 5.552 19 Si 0.770 3.230 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.200 1.200 23 C 0.030 3.970 24 C -0.195 4.195 25 C -0.204 4.204 26 C -0.194 4.194 27 O -0.217 6.217 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.179 0.821 32 H 0.183 0.817 33 H 0.149 0.851 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.129 0.871 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.182 11.613 -2.272 11.892 hybrid contribution 0.413 -1.654 0.582 1.801 sum 1.595 9.959 -1.689 10.227 Atomic orbital electron populations 1.20853 0.89195 1.03540 1.03464 1.19521 0.97448 0.90789 0.96789 1.21337 0.94254 0.97736 1.03435 1.21240 0.94586 0.97153 0.96606 1.20562 1.00796 0.89174 1.07315 1.20041 0.93024 0.85920 0.97312 1.20829 0.93532 0.95641 1.09226 1.21640 0.96012 0.90045 1.04235 1.23311 0.87393 0.95675 0.92604 0.83967 1.20881 0.80403 0.79340 0.90320 1.90596 1.39958 1.49616 1.66134 1.48146 1.33933 1.39996 1.09605 1.19469 0.85837 0.91835 0.90963 1.21536 0.96763 1.09542 1.29716 0.93248 1.25450 0.95001 0.99889 0.96577 1.69968 1.06733 1.39618 1.38904 0.85768 0.78237 0.80008 0.78974 1.20163 1.20679 1.20030 1.20993 0.98257 0.97202 0.80590 1.22446 1.00978 0.98350 0.97734 1.22952 1.00884 0.93016 1.03530 1.23033 1.01556 1.02515 0.92323 1.86831 1.39543 1.14514 1.80771 0.89637 0.89115 0.92421 0.82059 0.81665 0.85116 0.88712 0.87479 0.93643 0.95361 0.92323 0.91093 0.89285 0.91138 0.89414 0.88326 0.87101 0.88061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 9.91 71.23 0.71 -1.72 16 2 C -0.05 -1.24 5.87 -19.96 -0.12 -1.36 16 3 C -0.15 -3.36 9.73 22.31 0.22 -3.15 16 4 C -0.08 -1.82 10.02 22.21 0.22 -1.59 16 5 C -0.16 -4.91 10.06 22.45 0.23 -4.69 16 6 C 0.08 3.06 6.81 22.67 0.15 3.22 16 7 C -0.19 -6.57 6.06 -19.53 -0.12 -6.69 16 8 C -0.08 -2.97 5.01 30.73 0.15 -2.82 16 9 C 0.07 2.88 3.25 30.43 0.10 2.98 16 10 H 0.14 6.09 7.21 -2.39 -0.02 6.07 16 11 C 0.50 22.41 6.87 87.66 0.60 23.01 16 12 O -0.58 -28.68 16.08 15.16 0.24 -28.44 16 13 N -0.59 -24.77 2.48 -826.17 -2.05 -26.82 16 14 C 0.24 10.84 4.82 85.63 0.41 11.25 16 15 C -0.54 -26.61 8.48 25.60 0.22 -26.39 16 16 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 17 C 0.03 1.60 5.46 84.66 0.46 2.06 16 18 N -0.91 -47.62 13.29 21.45 0.28 -47.34 16 19 Si 0.94 40.86 29.54 68.60 2.03 42.89 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 23 C 0.15 5.65 5.72 86.38 0.49 6.15 16 24 C -0.18 -6.29 5.98 -10.79 -0.06 -6.35 16 25 C -0.17 -5.18 10.18 30.59 0.31 -4.87 16 26 C -0.16 -4.28 10.25 30.59 0.31 -3.96 16 27 O -0.30 -12.89 10.43 -76.87 -0.80 -13.69 16 28 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 29 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 30 H 0.06 1.36 7.57 -2.39 -0.02 1.35 16 31 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 34 H 0.09 3.45 6.04 -2.39 -0.01 3.44 16 35 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 36 H 0.05 2.07 4.63 -2.39 -0.01 2.06 16 37 H 0.03 1.34 7.80 -2.39 -0.02 1.33 16 38 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 39 H 0.07 2.63 7.52 -2.39 -0.02 2.61 16 40 H 0.09 3.01 7.53 -2.39 -0.02 2.99 16 41 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 43 H 0.10 2.95 8.04 -2.38 -0.02 2.93 16 44 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 45 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -63.25 371.17 4.98 -58.26 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.99 Total: 30.06 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 4.29 Total: -14.93 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -1.76 Total: -74.16 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -0.56 Total: -42.13 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -63.25 4.98 -58.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448907040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.379 kcal (2) G-P(sol) polarization free energy of solvation -63.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds