Wall clock time and date at job start Tue Mar 31 2020 11:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38401 * 120.01342 * 2 1 4 4 C 1.38246 * 119.76734 * 180.02562 * 3 2 1 5 5 C 1.37979 * 120.34944 * 359.82824 * 4 3 2 6 6 C 1.39233 * 120.23963 * 0.02562 * 5 4 3 7 7 C 1.37701 * 120.01208 * 180.02562 * 2 1 3 8 8 C 1.51641 * 132.17483 * 0.34075 * 7 2 1 9 9 C 1.54705 * 101.92470 * 164.58995 * 8 7 2 10 10 H 1.08998 * 110.74943 * 266.78038 * 9 8 7 11 11 C 1.50704 * 110.74634 * 143.61623 * 9 8 7 12 12 O 1.21276 * 119.99862 * 244.99692 * 11 9 8 13 13 N 1.34781 * 120.00113 * 64.99977 * 11 9 8 14 14 C 1.46494 * 120.00187 * 180.02562 * 13 11 9 15 15 H 1.09001 * 110.05522 * 326.41569 * 14 13 11 16 16 C 1.53869 * 110.03514 * 87.83057 * 14 13 11 17 17 C 1.54266 * 106.59800 * 119.28428 * 16 14 13 18 18 C 1.55238 * 104.23333 * 23.61579 * 17 16 14 19 19 H 1.08993 * 110.76342 * 80.31404 * 18 17 16 20 20 C 1.50702 * 110.89800 * 203.79412 * 18 17 16 21 21 H 1.08003 * 119.99932 * 113.21199 * 20 18 17 22 22 C 1.37871 * 119.99624 * 293.21103 * 20 18 17 23 23 N 1.31516 * 120.00376 * 0.02562 * 22 20 18 24 24 Si 1.86805 * 119.99561 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47534 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46886 * 120.00309 * 24 22 20 27 27 H 1.48505 * 109.47386 * 239.99878 * 24 22 20 28 28 C 1.54266 * 110.03259 * 205.00121 * 14 13 11 29 29 O 1.36136 * 129.89192 * 180.99600 * 6 5 4 30 30 H 1.08997 * 109.47096 * 269.98177 * 1 2 3 31 31 H 1.09000 * 109.46978 * 29.97939 * 1 2 3 32 32 H 1.08994 * 109.47380 * 149.97845 * 1 2 3 33 33 H 1.07998 * 120.11067 * 359.97438 * 3 2 1 34 34 H 1.07992 * 119.82110 * 179.80942 * 4 3 2 35 35 H 1.08002 * 119.87250 * 180.02562 * 5 4 3 36 36 H 1.09003 * 110.93940 * 46.43393 * 8 7 2 37 37 H 1.08995 * 110.94334 * 282.74586 * 8 7 2 38 38 H 0.97003 * 119.99576 * 0.02562 * 13 11 9 39 39 H 1.08999 * 110.04012 * 238.57075 * 16 14 13 40 40 H 1.09003 * 110.03070 * 0.02562 * 16 14 13 41 41 H 1.09005 * 110.48526 * 142.29451 * 17 16 14 42 42 H 1.09007 * 110.48724 * 264.79935 * 17 16 14 43 43 H 0.96999 * 119.99732 * 179.97438 * 23 22 20 44 44 H 1.09002 * 110.48629 * 335.78326 * 28 14 13 45 45 H 1.08998 * 110.48744 * 98.29230 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1992 1.1984 0.0000 4 6 3.5817 1.1925 -0.0005 5 6 4.2737 -0.0012 0.0025 6 6 3.5848 -1.2111 0.0056 7 6 2.1957 -1.1924 -0.0005 8 6 1.7318 -2.6361 -0.0079 9 6 3.0254 -3.3854 -0.4060 10 1 3.0679 -3.5363 -1.4847 11 6 3.1240 -4.7027 0.3195 12 8 4.0159 -4.8888 1.1199 13 7 2.2211 -5.6739 0.0787 14 6 2.3166 -6.9542 0.7843 15 1 3.3621 -7.2049 0.9639 16 6 1.5560 -6.8782 2.1197 17 6 0.4451 -7.9466 2.0555 18 6 0.9622 -8.9727 1.0117 19 1 1.6869 -9.6505 1.4625 20 6 -0.1815 -9.7406 0.4006 21 1 -0.4216 -9.6110 -0.6444 22 6 -0.9211 -10.6085 1.1755 23 7 -0.6290 -10.7659 2.4481 24 14 -2.3383 -11.5608 0.4177 25 1 -2.4594 -11.2081 -1.0196 26 1 -2.0822 -13.0177 0.5496 27 1 -3.5997 -11.2144 1.1209 28 6 1.6414 -8.0662 -0.0448 29 8 4.0603 -2.4866 0.0270 30 1 -0.3633 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5141 33 1 1.6613 2.1349 -0.0004 34 1 4.1227 2.1271 -0.0037 35 1 5.3537 0.0032 0.0025 36 1 0.9485 -2.7898 -0.7501 37 1 1.3937 -2.9417 0.9822 38 1 1.5080 -5.5252 -0.5618 39 1 2.2323 -7.0920 2.9474 40 1 1.1154 -5.8888 2.2426 41 1 0.3174 -8.4230 3.0276 42 1 -0.4932 -7.5019 1.7236 43 1 -1.1497 -11.3762 2.9933 44 1 0.8970 -7.6413 -0.7182 45 1 2.3866 -8.6285 -0.6074 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452558515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:48 Heat of formation + Delta-G solvation = -76.021684 kcal Electronic energy + Delta-G solvation = -25715.341185 eV Core-core repulsion = 22082.436396 eV Total energy + Delta-G solvation = -3632.904789 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.48871 -40.74879 -38.91405 -38.27232 -35.41679 -34.45858 -33.80057 -32.20490 -30.94401 -29.95760 -28.70894 -27.59912 -26.00901 -25.09064 -23.13223 -22.02754 -21.85909 -21.28149 -20.82321 -18.76185 -18.60686 -18.16737 -17.68324 -17.11463 -16.82544 -16.60134 -16.13866 -15.84675 -15.53749 -14.87691 -14.70366 -14.52169 -14.47901 -14.30000 -14.02503 -13.88421 -13.66844 -13.44379 -13.23807 -13.02738 -12.91588 -12.82226 -12.59852 -12.39557 -12.37034 -12.13884 -12.03082 -11.74116 -11.68199 -11.41949 -11.11097 -10.88909 -10.81873 -10.45910 -10.11502 -9.64557 -9.15084 -8.09697 -6.19403 0.30557 0.37056 1.38823 1.42950 1.45602 1.55829 1.58965 2.44901 2.49247 2.73883 3.22040 3.25632 3.38824 3.69880 3.85316 3.90110 3.96338 4.01980 4.11104 4.17218 4.24219 4.46666 4.50029 4.61441 4.66806 4.69923 4.74380 4.81855 4.86777 4.89398 4.94287 4.99904 5.04769 5.16620 5.22889 5.28186 5.35722 5.38556 5.45935 5.58356 5.61213 5.66607 5.68124 5.91379 5.99221 6.16943 6.38027 6.47615 6.92345 7.12068 7.48727 8.99802 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.002576 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.813364 B =10864.865531 C =11548.550530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.041 4.041 3 C -0.151 4.151 4 C -0.079 4.079 5 C -0.159 4.159 6 C 0.076 3.924 7 C -0.186 4.186 8 C -0.090 4.090 9 C 0.067 3.933 10 H 0.144 0.856 11 C 0.515 3.485 12 O -0.573 6.573 13 N -0.694 5.694 14 C 0.151 3.849 15 H 0.069 0.931 16 C -0.124 4.124 17 C -0.092 4.092 18 C 0.040 3.960 19 H -0.001 1.001 20 C -0.524 4.524 21 H 0.062 0.938 22 C 0.009 3.991 23 N -0.923 5.923 24 Si 0.953 3.047 25 H -0.261 1.261 26 H -0.286 1.286 27 H -0.283 1.283 28 C -0.106 4.106 29 O -0.308 6.308 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.085 0.915 38 H 0.418 0.582 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.032 0.968 42 H 0.046 0.954 43 H 0.259 0.741 44 H 0.081 0.919 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.948 25.243 -9.123 26.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.042 4.042 3 C -0.169 4.169 4 C -0.097 4.097 5 C -0.178 4.178 6 C 0.031 3.969 7 C -0.186 4.186 8 C -0.127 4.127 9 C 0.008 3.992 10 H 0.161 0.839 11 C 0.301 3.699 12 O -0.452 6.452 13 N -0.347 5.347 14 C 0.046 3.954 15 H 0.087 0.913 16 C -0.163 4.163 17 C -0.131 4.131 18 C 0.021 3.979 19 H 0.018 0.982 20 C -0.562 4.562 21 H 0.080 0.920 22 C -0.189 4.189 23 N -0.563 5.563 24 Si 0.780 3.220 25 H -0.185 1.185 26 H -0.213 1.213 27 H -0.209 1.209 28 C -0.144 4.144 29 O -0.222 6.222 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.173 0.827 34 H 0.178 0.822 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.104 0.896 38 H 0.256 0.744 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.099 0.901 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.749 24.914 -8.353 26.421 hybrid contribution -0.694 -1.171 0.080 1.363 sum 2.055 23.744 -8.273 25.228 Atomic orbital electron populations 1.20882 0.89053 1.04220 1.03190 1.19502 0.97446 0.90764 0.96445 1.21359 0.94259 0.98046 1.03201 1.21225 0.94622 0.97273 0.96535 1.20541 1.00904 0.89113 1.07215 1.19983 0.93196 0.85444 0.98285 1.20703 0.93034 0.95707 1.09203 1.21737 0.96577 0.89657 1.04743 1.23318 0.87550 0.87692 1.00658 0.83903 1.20546 0.81534 0.85623 0.82215 1.90722 1.36083 1.81514 1.36832 1.45937 1.30647 1.13633 1.44518 1.21529 0.99401 0.82444 0.91988 0.91283 1.22511 0.97776 0.99339 0.96658 1.22185 0.96127 0.95140 0.99634 1.19591 0.93923 0.92217 0.92135 0.98246 1.21507 1.14620 1.23809 0.96243 0.91959 1.25797 1.00068 0.97829 0.95253 1.70111 1.41303 1.37735 1.07107 0.85574 0.79241 0.78151 0.79083 1.18501 1.21255 1.20924 1.22570 0.98872 0.95056 0.97897 1.86895 1.38161 1.14191 1.82972 0.90566 0.89476 0.90746 0.82663 0.82215 0.85083 0.84661 0.89630 0.74414 0.93407 0.91577 0.94863 0.93567 0.93250 0.90076 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.91 71.23 0.71 -0.55 16 2 C -0.04 -0.67 5.87 -19.95 -0.12 -0.79 16 3 C -0.15 -2.06 9.73 22.31 0.22 -1.84 16 4 C -0.08 -1.15 10.02 22.21 0.22 -0.93 16 5 C -0.16 -3.24 10.06 22.45 0.23 -3.01 16 6 C 0.08 1.88 7.04 22.67 0.16 2.04 16 7 C -0.19 -3.81 6.07 -19.53 -0.12 -3.93 16 8 C -0.09 -1.65 6.19 30.73 0.19 -1.46 16 9 C 0.07 1.54 4.05 30.43 0.12 1.66 16 10 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 11 C 0.52 15.38 7.13 87.66 0.62 16.01 16 12 O -0.57 -23.26 16.23 15.20 0.25 -23.01 16 13 N -0.69 -18.45 4.97 -439.12 -2.18 -20.63 16 14 C 0.15 5.19 3.25 45.71 0.15 5.34 16 15 H 0.07 2.62 7.57 -2.39 -0.02 2.60 16 16 C -0.12 -4.70 6.59 31.32 0.21 -4.50 16 17 C -0.09 -4.18 5.78 31.79 0.18 -4.00 16 18 C 0.04 1.93 2.74 -10.12 -0.03 1.90 16 19 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 20 C -0.52 -27.34 8.50 25.60 0.22 -27.12 16 21 H 0.06 3.11 7.77 -2.91 -0.02 3.09 16 22 C 0.01 0.49 5.37 84.65 0.45 0.94 16 23 N -0.92 -53.27 12.44 21.45 0.27 -53.01 16 24 Si 0.95 42.32 29.54 68.60 2.03 44.35 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 28 C -0.11 -3.88 5.93 31.67 0.19 -3.69 16 29 O -0.31 -9.14 10.39 -76.88 -0.80 -9.94 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.62 8.09 -2.39 -0.02 0.60 16 32 H 0.07 0.72 7.57 -2.39 -0.02 0.70 16 33 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 34 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 35 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.14 1.47 7.91 -2.39 -0.02 1.45 16 37 H 0.09 1.77 7.92 -2.39 -0.02 1.75 16 38 H 0.42 8.02 8.36 -92.71 -0.77 7.25 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 2.28 7.92 -2.39 -0.02 2.26 16 41 H 0.03 1.69 7.66 -2.38 -0.02 1.67 16 42 H 0.05 2.07 8.05 -2.38 -0.02 2.05 16 43 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 44 H 0.08 2.66 7.63 -2.39 -0.02 2.64 16 45 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -72.06 368.71 3.38 -68.68 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.22 Total: 17.48 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 3.60 Total: -23.92 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -1.92 Total: -73.64 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.55 Total: -32.96 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -72.06 3.38 -68.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452558515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.341 kcal (2) G-P(sol) polarization free energy of solvation -72.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds