Wall clock time and date at job start Tue Mar 31 2020 11:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36661 * 119.77548 * 2 1 4 4 C 1.39661 * 119.70606 * 180.02562 * 3 2 1 5 5 C 1.46253 * 134.19049 * 180.02562 * 4 3 2 6 6 C 1.35812 * 106.07917 * 179.97438 * 5 4 3 7 7 C 1.46978 * 125.12442 * 179.97438 * 6 5 4 8 8 O 1.21656 * 120.00354 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99814 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00106 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47001 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47127 * 299.99593 * 11 10 9 13 13 C 1.52996 * 109.47343 * 59.99759 * 11 10 9 14 14 C 1.50707 * 109.46840 * 179.97438 * 11 10 9 15 15 H 1.07995 * 119.99719 * 1.34878 * 14 11 10 16 16 C 1.37878 * 119.99830 * 181.34241 * 14 11 10 17 17 N 1.31513 * 119.99878 * 193.97465 * 16 14 11 18 18 Si 1.86801 * 120.00021 * 13.98035 * 16 14 11 19 19 H 1.48510 * 109.47176 * 84.54310 * 18 16 14 20 20 H 1.48491 * 109.47252 * 204.54462 * 18 16 14 21 21 H 1.48507 * 109.47073 * 324.54795 * 18 16 14 22 22 O 1.34946 * 109.74649 * 0.02562 * 6 5 4 23 23 C 1.34720 * 110.86121 * 0.02562 * 22 6 5 24 24 C 1.38986 * 133.24500 * 179.97438 * 23 22 6 25 25 C 1.37834 * 119.85333 * 180.25521 * 24 23 22 26 26 C 1.50700 * 119.62919 * 179.72528 * 25 24 23 27 27 H 1.08998 * 109.46945 * 89.99940 * 1 2 3 28 28 H 1.08999 * 109.47082 * 209.99840 * 1 2 3 29 29 H 1.09004 * 109.47325 * 330.00169 * 1 2 3 30 30 H 1.08000 * 120.14712 * 0.04073 * 3 2 1 31 31 H 1.08002 * 126.96272 * 359.96452 * 5 4 3 32 32 H 0.97002 * 119.99888 * 359.97438 * 9 7 6 33 33 H 1.08994 * 109.46943 * 299.99479 * 10 9 7 34 34 H 1.09002 * 109.47082 * 59.99539 * 10 9 7 35 35 H 1.08996 * 109.46968 * 69.37183 * 12 11 10 36 36 H 1.08999 * 109.47261 * 189.37007 * 12 11 10 37 37 H 1.08997 * 109.46960 * 309.37217 * 12 11 10 38 38 H 1.09003 * 109.47194 * 60.00002 * 13 11 10 39 39 H 1.09000 * 109.47291 * 179.97438 * 13 11 10 40 40 H 1.08997 * 109.47332 * 300.00193 * 13 11 10 41 41 H 0.97000 * 119.99886 * 180.02562 * 17 16 14 42 42 H 1.07995 * 120.07480 * 359.97438 * 24 23 22 43 43 H 1.09004 * 109.47391 * 90.00183 * 26 25 24 44 44 H 1.09006 * 109.47416 * 209.99647 * 26 25 24 45 45 H 1.08997 * 109.47602 * 329.99885 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.1862 0.0000 4 6 3.5823 1.1845 -0.0005 5 6 4.6030 2.2319 -0.0002 6 6 5.8001 1.5906 -0.0005 7 6 7.1133 2.2508 -0.0009 8 8 7.1835 3.4654 -0.0015 9 7 8.2396 1.5107 -0.0017 10 6 9.5486 2.1688 -0.0027 11 6 10.6521 1.1091 -0.0028 12 6 10.5211 0.2362 1.2469 13 6 10.5198 0.2351 -1.2516 14 6 11.9986 1.7861 -0.0045 15 1 12.0609 2.8641 0.0167 16 6 13.1507 1.0293 -0.0328 17 7 14.3103 1.5863 0.2404 18 14 13.0646 -0.7873 -0.4595 19 1 13.0793 -0.9504 -1.9355 20 1 14.2336 -1.4897 0.1278 21 1 11.8121 -1.3660 0.0899 22 8 5.6022 0.2557 -0.0016 23 6 4.2866 -0.0342 -0.0025 24 6 3.5745 -1.2278 -0.0042 25 6 2.1964 -1.2046 -0.0102 26 6 1.4294 -2.5018 -0.0183 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6444 2.1208 0.0007 31 1 4.4382 3.2993 0.0000 32 1 8.1837 0.5423 -0.0017 33 1 9.6417 2.7910 -0.8928 34 1 9.6430 2.7912 0.8872 35 1 9.6250 -0.3791 1.1680 36 1 11.3969 -0.4069 1.3343 37 1 10.4483 0.8728 2.1287 38 1 10.6131 0.8570 -2.1419 39 1 11.3063 -0.5196 -1.2519 40 1 9.5460 -0.2545 -1.2509 41 1 15.1209 1.0539 0.2200 42 1 4.0999 -2.1714 -0.0055 43 1 1.2399 -2.8184 1.0074 44 1 0.4806 -2.3598 -0.5358 45 1 2.0128 -3.2657 -0.5323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457989401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:40 Heat of formation + Delta-G solvation = -24.575689 kcal Electronic energy + Delta-G solvation = -25634.631468 eV Core-core repulsion = 22003.957545 eV Total energy + Delta-G solvation = -3630.673923 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.59355 -40.86805 -39.61165 -38.50089 -35.19943 -34.40221 -33.58037 -33.14571 -32.08000 -28.70940 -28.06491 -28.00635 -27.25764 -26.67944 -24.00108 -22.97177 -22.48175 -21.33410 -21.00043 -19.39795 -18.24532 -18.04581 -17.56458 -17.21048 -16.85804 -16.33364 -16.23953 -16.13080 -15.30876 -15.06360 -15.02053 -14.89743 -14.68226 -14.43965 -14.18312 -14.06126 -13.91537 -13.79151 -13.56834 -13.20642 -13.03609 -12.98584 -12.44175 -12.42303 -12.31622 -12.23956 -11.99570 -11.90835 -11.81284 -11.56202 -11.20088 -11.08608 -10.64043 -10.44053 -10.23335 -9.43068 -9.22315 -8.31547 -6.33200 -0.53649 0.27512 0.73516 1.33004 1.35705 1.36467 1.49180 1.98191 2.07399 2.33157 2.58039 3.04152 3.30909 3.56387 3.81156 3.88750 3.96396 4.03057 4.10559 4.25174 4.27045 4.35739 4.43946 4.67489 4.68964 4.74166 4.76801 4.79383 4.80899 4.86298 4.88229 4.90515 5.00813 5.01760 5.05745 5.17090 5.21565 5.27545 5.27896 5.31613 5.44684 5.53997 5.63324 5.67543 5.74171 5.98532 6.26506 6.39193 6.70460 6.91568 7.31549 8.85292 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.025043 B = 0.002744 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.799128 B =10202.291546 C =11102.074023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.106 4.106 3 C -0.065 4.065 4 C -0.164 4.164 5 C -0.108 4.108 6 C -0.043 4.043 7 C 0.593 3.407 8 O -0.555 6.555 9 N -0.697 5.697 10 C 0.153 3.847 11 C 0.028 3.972 12 C -0.143 4.143 13 C -0.149 4.149 14 C -0.516 4.516 15 H 0.033 0.967 16 C 0.019 3.981 17 N -0.943 5.943 18 Si 0.942 3.058 19 H -0.281 1.281 20 H -0.314 1.314 21 H -0.208 1.208 22 O -0.193 6.193 23 C 0.048 3.952 24 C -0.124 4.124 25 C -0.044 4.044 26 C -0.116 4.116 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.150 0.850 31 H 0.178 0.822 32 H 0.413 0.587 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.050 0.950 39 H 0.037 0.963 40 H 0.067 0.933 41 H 0.265 0.735 42 H 0.149 0.851 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.043 -10.578 -0.756 33.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.106 4.106 3 C -0.083 4.083 4 C -0.165 4.165 5 C -0.129 4.129 6 C -0.093 4.093 7 C 0.380 3.620 8 O -0.436 6.436 9 N -0.347 5.347 10 C 0.030 3.970 11 C 0.026 3.974 12 C -0.200 4.200 13 C -0.206 4.206 14 C -0.554 4.554 15 H 0.051 0.949 16 C -0.179 4.179 17 N -0.582 5.582 18 Si 0.772 3.228 19 H -0.208 1.208 20 H -0.243 1.243 21 H -0.132 1.132 22 O -0.095 6.095 23 C 0.000 4.000 24 C -0.143 4.143 25 C -0.044 4.044 26 C -0.172 4.172 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.168 0.832 31 H 0.196 0.804 32 H 0.251 0.749 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.167 0.833 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -31.556 -9.940 -0.732 33.092 hybrid contribution 1.328 -0.300 -0.217 1.379 sum -30.228 -10.239 -0.949 31.929 Atomic orbital electron populations 1.20883 0.88074 1.04274 1.03536 1.19820 0.98198 0.91497 1.01117 1.20518 0.90115 0.99873 0.97773 1.20058 0.95537 0.91824 1.09039 1.22961 0.89199 1.00808 0.99931 1.21724 0.95354 0.81034 1.11140 1.16889 0.82111 0.85979 0.77048 1.90849 1.86461 1.13560 1.52738 1.46041 1.05433 1.11117 1.72146 1.21263 0.79769 0.95228 1.00759 1.18663 0.92421 0.92820 0.93452 1.22245 1.00581 0.99151 0.98071 1.22319 1.00205 0.99161 0.98924 1.20968 0.90025 0.93329 1.51104 0.94866 1.25817 0.94676 1.03337 0.94058 1.70100 0.99642 1.39211 1.49280 0.86363 0.77673 0.80581 0.78225 1.20839 1.24337 1.13206 1.83971 1.25557 1.23178 1.76837 1.20163 0.80516 0.96850 1.02490 1.20137 0.93225 0.94638 1.06269 1.20030 0.91554 0.97054 0.95790 1.20973 1.00384 0.91913 1.03951 0.89935 0.89601 0.90587 0.83248 0.80418 0.74930 0.92673 0.92874 0.92193 0.93324 0.93732 0.93078 0.94461 0.91421 0.92610 0.83316 0.89325 0.89116 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.15 71.24 0.65 -0.08 16 2 C -0.11 -1.44 5.85 -20.10 -0.12 -1.56 16 3 C -0.06 -1.11 9.68 22.24 0.22 -0.90 16 4 C -0.16 -3.84 6.38 -20.24 -0.13 -3.97 16 5 C -0.11 -2.85 10.81 23.79 0.26 -2.60 16 6 C -0.04 -1.29 7.07 24.00 0.17 -1.12 16 7 C 0.59 20.71 7.79 86.53 0.67 21.38 16 8 O -0.56 -22.70 16.83 -4.21 -0.07 -22.77 16 9 N -0.70 -23.65 5.00 -466.80 -2.33 -25.98 16 10 C 0.15 6.20 4.49 86.38 0.39 6.59 16 11 C 0.03 1.19 0.50 -52.93 -0.03 1.16 16 12 C -0.14 -5.61 7.53 71.98 0.54 -5.07 16 13 C -0.15 -5.78 7.52 71.98 0.54 -5.23 16 14 C -0.52 -28.47 8.62 25.60 0.22 -28.25 16 15 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 16 C 0.02 1.07 5.32 84.66 0.45 1.52 16 17 N -0.94 -58.48 13.96 21.45 0.30 -58.18 16 18 Si 0.94 43.10 22.79 68.60 1.56 44.66 16 19 H -0.28 -12.61 7.10 99.48 0.71 -11.90 16 20 H -0.31 -14.77 7.11 99.48 0.71 -14.06 16 21 H -0.21 -8.16 4.65 99.48 0.46 -7.70 16 22 O -0.19 -5.42 10.28 -13.04 -0.13 -5.56 16 23 C 0.05 1.17 7.41 23.07 0.17 1.34 16 24 C -0.12 -2.28 9.70 22.35 0.22 -2.07 16 25 C -0.04 -0.61 5.88 -19.83 -0.12 -0.73 16 26 C -0.12 -0.77 9.15 71.24 0.65 -0.12 16 27 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.09 0.33 6.69 -2.39 -0.02 0.31 16 29 H 0.08 0.41 8.08 -2.39 -0.02 0.39 16 30 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 31 H 0.18 4.15 8.06 -2.91 -0.02 4.13 16 32 H 0.41 12.26 5.97 -92.71 -0.55 11.70 16 33 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 1.90 7.13 -2.39 -0.02 1.89 16 36 H 0.05 1.99 4.30 -2.39 -0.01 1.98 16 37 H 0.04 1.76 8.12 -2.39 -0.02 1.74 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.04 1.49 2.25 -2.39 -0.01 1.49 16 40 H 0.07 2.11 6.86 -2.39 -0.02 2.09 16 41 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 42 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.09 0.33 6.69 -2.38 -0.02 0.32 16 45 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16 Total: -1.00 -70.86 355.90 4.31 -66.55 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.22 Total: 20.96 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 4.76 Total: -19.69 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -2.03 Total: -84.16 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.20 Total: -28.32 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.56 Total: 44.66 kcal Total: -70.86 4.31 -66.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.974 kcal (2) G-P(sol) polarization free energy of solvation -70.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds