Wall clock time and date at job start Tue Mar 31 2020 12:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 115.55094 * 2 1 4 4 C 1.53006 * 117.49708 * 145.66756 * 2 1 3 5 5 C 1.52996 * 117.49981 * 214.28684 * 2 1 3 6 6 H 1.09001 * 117.49865 * 145.02084 * 5 2 1 7 7 C 1.53002 * 117.49552 * 0.02562 * 5 2 1 8 8 N 1.46507 * 109.46926 * 174.99655 * 7 5 2 9 9 C 1.34773 * 119.99881 * 179.97438 * 8 7 5 10 10 O 1.21723 * 120.00499 * 0.02562 * 9 8 7 11 11 C 1.46260 * 119.99749 * 180.02562 * 9 8 7 12 12 C 1.35018 * 119.99637 * 173.21845 * 11 9 8 13 13 C 1.46962 * 120.00404 * 348.68458 * 12 11 9 14 14 C 1.40024 * 120.09868 * 316.40675 * 13 12 11 15 15 C 1.37598 * 119.89848 * 179.71732 * 14 13 12 16 16 C 1.39182 * 120.09938 * 0.53424 * 15 14 13 17 17 O 1.35569 * 119.89899 * 179.73872 * 16 15 14 18 18 C 1.34778 * 117.00171 * 174.38385 * 17 16 15 19 19 H 1.08008 * 119.99851 * 5.06809 * 18 17 16 20 20 C 1.38714 * 120.00332 * 185.06279 * 18 17 16 21 21 N 1.31508 * 119.99997 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46938 * 90.00031 * 22 20 18 24 24 H 1.48499 * 109.46958 * 209.99818 * 22 20 18 25 25 H 1.48499 * 109.47119 * 329.99902 * 22 20 18 26 26 C 1.39179 * 120.19950 * 359.76548 * 16 15 14 27 27 C 1.37588 * 120.10516 * 359.95382 * 26 16 15 28 28 H 1.09004 * 109.47274 * 325.72521 * 1 2 3 29 29 H 1.09001 * 109.47416 * 205.72596 * 1 2 3 30 30 H 1.08999 * 109.46986 * 85.72497 * 1 2 3 31 31 H 1.08998 * 109.47209 * 34.41112 * 3 2 1 32 32 H 1.09003 * 109.47029 * 154.41736 * 3 2 1 33 33 H 1.08999 * 109.46766 * 274.41177 * 3 2 1 34 34 H 1.09001 * 117.49468 * 214.97764 * 4 2 1 35 35 H 1.08997 * 117.49669 * 359.97438 * 4 2 1 36 36 H 1.08997 * 109.47395 * 294.99029 * 7 5 2 37 37 H 1.08994 * 109.47285 * 55.00175 * 7 5 2 38 38 H 0.96996 * 119.99822 * 0.02562 * 8 7 5 39 39 H 1.07994 * 120.00222 * 353.21762 * 11 9 8 40 40 H 1.08002 * 119.99824 * 168.68846 * 12 11 9 41 41 H 1.07999 * 120.04814 * 359.97438 * 14 13 12 42 42 H 1.07998 * 119.95156 * 180.27801 * 15 14 13 43 43 H 0.97010 * 119.99977 * 180.02562 * 21 20 18 44 44 H 1.08005 * 119.94356 * 179.97438 * 26 16 15 45 45 H 1.08000 * 120.05264 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1208 0.7655 5 6 2.2364 -1.1213 -0.7645 6 1 3.1715 -0.8756 -1.2679 7 6 1.3588 -2.1564 -1.4710 8 7 2.2058 -3.0712 -2.2404 9 6 1.6467 -4.0722 -2.9489 10 8 0.4380 -4.2160 -2.9498 11 6 2.4924 -4.9858 -3.7166 12 6 1.9487 -6.0677 -4.3140 13 6 0.5712 -6.4684 -3.9955 14 6 0.1299 -6.4705 -2.6666 15 6 -1.1626 -6.8409 -2.3737 16 6 -2.0274 -7.2237 -3.3947 17 8 -3.2983 -7.5930 -3.1010 18 6 -4.1196 -7.8402 -4.1407 19 1 -3.7344 -7.8208 -5.1495 20 6 -5.4594 -8.1196 -3.9151 21 7 -6.2606 -8.3613 -4.9296 22 14 -6.1257 -8.1525 -2.1702 23 1 -6.6018 -6.7964 -1.7966 24 1 -7.2552 -9.1132 -2.0897 25 1 -5.0499 -8.5739 -1.2374 26 6 -1.5912 -7.2292 -4.7164 27 6 -0.3024 -6.8549 -5.0194 28 1 -0.3634 0.8492 0.5788 29 1 -0.3634 -0.9258 0.4461 30 1 -0.3633 0.0766 -1.0248 31 1 1.5817 2.0738 0.5807 32 1 3.1829 1.3084 0.4438 33 1 2.2753 1.7422 -1.0246 34 1 3.1715 -0.8747 1.2686 35 1 1.6111 -1.8578 1.2693 36 1 0.7943 -2.7213 -0.7291 37 1 0.6679 -1.6485 -2.1438 38 1 3.1690 -2.9569 -2.2394 39 1 3.5516 -4.7950 -3.8055 40 1 2.5263 -6.6387 -5.0259 41 1 0.8016 -6.1778 -1.8733 42 1 -1.5052 -6.8384 -1.3495 43 1 -7.1977 -8.5563 -4.7718 44 1 -2.2657 -7.5274 -5.5055 45 1 0.0353 -6.8598 -6.0452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491860393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:30 Heat of formation + Delta-G solvation = 7.208421 kcal Electronic energy + Delta-G solvation = -25178.096627 eV Core-core repulsion = 21548.800966 eV Total energy + Delta-G solvation = -3629.295661 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.92402 -39.11630 -38.58778 -36.61458 -34.32988 -33.06452 -32.26892 -30.18904 -29.99425 -28.45801 -27.94779 -26.59448 -25.25460 -22.91410 -21.90703 -21.46592 -20.89049 -19.64061 -18.64606 -17.79676 -17.32069 -16.77314 -16.27191 -15.27471 -14.93863 -14.81074 -14.56098 -14.30034 -14.12101 -13.83364 -13.78276 -13.60790 -13.35282 -13.15825 -12.85543 -12.67356 -12.57032 -12.43941 -12.29437 -12.20173 -12.06891 -11.70912 -11.43699 -11.32693 -10.93740 -10.74918 -10.64833 -10.28198 -10.13713 -9.99115 -9.49956 -9.41885 -9.20057 -8.94059 -8.73550 -7.99168 -6.96028 -6.40489 -4.04293 1.20155 2.35059 2.63921 3.14427 3.24293 3.28461 3.42874 3.48902 3.62762 4.25890 4.28633 4.42063 4.50697 4.64065 4.74413 4.90677 4.92120 5.08927 5.16105 5.18661 5.22630 5.31154 5.46379 5.52109 5.55262 5.60051 5.60817 5.65762 5.69044 5.70535 5.78292 5.83580 5.90692 6.05050 6.19915 6.28194 6.38826 6.52313 6.53391 6.68959 6.94348 7.20025 7.33679 7.40323 7.65882 7.69377 7.86465 8.08218 8.52340 8.94855 9.59435 10.66917 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.002943 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.216199 B = 9512.273271 C =11092.810143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C -0.115 4.115 4 C -0.169 4.169 5 C -0.161 4.161 6 H 0.108 0.892 7 C 0.154 3.846 8 N -0.734 5.734 9 C 0.537 3.463 10 O -0.513 6.513 11 C -0.263 4.263 12 C 0.025 3.975 13 C -0.180 4.180 14 C 0.011 3.989 15 C -0.203 4.203 16 C 0.177 3.823 17 O -0.213 6.213 18 C -0.387 4.387 19 H 0.108 0.892 20 C 0.063 3.937 21 N -0.878 5.878 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.238 4.238 27 C -0.044 4.044 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.395 0.605 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.280 0.720 44 H 0.132 0.868 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.639 14.280 7.906 26.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.120 4.120 3 C -0.172 4.172 4 C -0.206 4.206 5 C -0.179 4.179 6 H 0.126 0.874 7 C 0.030 3.970 8 N -0.387 5.387 9 C 0.327 3.673 10 O -0.389 6.389 11 C -0.284 4.284 12 C 0.005 3.995 13 C -0.181 4.181 14 C -0.008 4.008 15 C -0.222 4.222 16 C 0.124 3.876 17 O -0.117 6.117 18 C -0.463 4.463 19 H 0.125 0.875 20 C -0.140 4.140 21 N -0.515 5.515 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.257 4.257 27 C -0.062 4.062 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.229 0.771 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.090 0.910 44 H 0.150 0.850 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 19.361 14.087 8.054 25.262 hybrid contribution 0.207 0.165 0.465 0.535 sum 19.568 14.252 8.519 25.663 Atomic orbital electron populations 1.21398 0.91671 1.02337 1.02386 1.21598 0.95203 0.91151 1.04005 1.21364 0.99853 0.94021 1.01977 1.23368 1.02381 1.01308 0.93522 1.22618 1.01202 0.99795 0.94292 0.87425 1.20767 0.92213 0.89459 0.94558 1.45971 1.10131 1.31973 1.50667 1.18503 0.88621 0.81033 0.79134 1.90995 1.14317 1.71545 1.62079 1.22622 0.99262 0.98723 1.07809 1.22346 0.93583 0.91925 0.91658 1.18358 0.93982 1.11994 0.93787 1.20441 0.93952 0.91894 0.94513 1.19997 0.93817 1.10582 0.97799 1.19269 0.84777 0.90736 0.92834 1.83502 1.17752 1.74348 1.36135 1.20830 0.89915 1.48330 0.87198 0.87470 1.24488 0.94540 0.95651 0.99341 1.69629 1.05822 1.45336 1.30732 0.86182 0.78751 0.78455 0.83545 1.19830 1.20766 1.18307 1.21068 0.97185 1.10717 0.96732 1.20796 0.93028 0.95183 0.97197 0.92010 0.92030 0.91813 0.91950 0.92513 0.92147 0.88778 0.88488 0.91443 0.91274 0.77124 0.86077 0.85903 0.87946 0.86875 0.91021 0.85030 0.87316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 8.86 37.16 0.33 -0.67 16 2 C -0.12 -0.91 2.70 -154.51 -0.42 -1.33 16 3 C -0.12 -0.72 9.85 37.16 0.37 -0.36 16 4 C -0.17 -1.25 9.47 -26.73 -0.25 -1.51 16 5 C -0.16 -1.27 5.57 -90.62 -0.50 -1.78 16 6 H 0.11 0.73 8.04 -51.93 -0.42 0.31 16 7 C 0.15 1.65 5.04 -4.04 -0.02 1.63 16 8 N -0.73 -7.90 5.55 -61.75 -0.34 -8.24 16 9 C 0.54 7.75 6.77 -13.04 -0.09 7.66 16 10 O -0.51 -9.83 12.18 5.17 0.06 -9.77 16 11 C -0.26 -3.21 9.90 -37.50 -0.37 -3.59 16 12 C 0.02 0.34 9.80 -37.19 -0.36 -0.03 16 13 C -0.18 -3.27 4.54 -105.03 -0.48 -3.74 16 14 C 0.01 0.20 6.59 -39.15 -0.26 -0.05 16 15 C -0.20 -4.44 9.97 -39.46 -0.39 -4.83 16 16 C 0.18 4.36 6.66 -38.88 -0.26 4.10 16 17 O -0.21 -5.87 8.57 0.75 0.01 -5.86 16 18 C -0.39 -11.23 9.94 30.91 0.31 -10.92 16 19 H 0.11 3.17 5.41 -52.48 -0.28 2.88 16 20 C 0.06 1.81 5.49 -17.51 -0.10 1.72 16 21 N -0.88 -25.75 13.96 55.48 0.77 -24.97 16 22 Si 0.91 22.17 28.62 -169.99 -4.86 17.31 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 26 C -0.24 -5.45 9.14 -39.47 -0.36 -5.81 16 27 C -0.04 -0.85 9.78 -39.15 -0.38 -1.23 16 28 H 0.06 0.45 7.92 -51.93 -0.41 0.03 16 29 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 30 H 0.06 0.56 7.83 -51.93 -0.41 0.15 16 31 H 0.06 0.36 7.92 -51.93 -0.41 -0.05 16 32 H 0.06 0.31 7.90 -51.93 -0.41 -0.10 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.59 8.05 -51.93 -0.42 0.18 16 35 H 0.10 0.77 7.94 -51.93 -0.41 0.36 16 36 H 0.07 0.82 7.88 -51.93 -0.41 0.42 16 37 H 0.07 0.85 7.77 -51.93 -0.40 0.45 16 38 H 0.40 3.01 8.38 -40.82 -0.34 2.66 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.10 1.80 7.02 -52.49 -0.37 1.43 16 42 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 43 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.13 3.12 5.62 -52.48 -0.29 2.82 16 45 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 374.55 15.07 5.64 5.64 Total: -1.00 -32.76 374.55 -8.61 -41.38 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.65 Total: 5.25 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -3.24 Total: -20.74 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.43 Total: -33.22 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.07 Total: -15.63 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.86 Total: 17.31 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.76 -8.61 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491860393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.585 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds