Wall clock time and date at job start Tue Mar 31 2020 12:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 115.55094 * 2 1 4 4 C 1.53006 * 117.49708 * 145.66756 * 2 1 3 5 5 C 1.52996 * 117.49981 * 214.28684 * 2 1 3 6 6 H 1.09001 * 117.49865 * 145.02084 * 5 2 1 7 7 C 1.53002 * 117.49552 * 0.02562 * 5 2 1 8 8 N 1.46507 * 109.46926 * 174.99655 * 7 5 2 9 9 C 1.34773 * 119.99881 * 179.97438 * 8 7 5 10 10 O 1.21723 * 120.00499 * 0.02562 * 9 8 7 11 11 C 1.46260 * 119.99749 * 180.02562 * 9 8 7 12 12 C 1.35018 * 119.99637 * 173.21845 * 11 9 8 13 13 C 1.46962 * 120.00404 * 348.68458 * 12 11 9 14 14 C 1.40024 * 120.09868 * 316.40675 * 13 12 11 15 15 C 1.37598 * 119.89848 * 179.71732 * 14 13 12 16 16 C 1.39182 * 120.09938 * 0.53424 * 15 14 13 17 17 O 1.35569 * 119.89899 * 179.73872 * 16 15 14 18 18 C 1.34778 * 117.00171 * 174.38385 * 17 16 15 19 19 H 1.08008 * 119.99851 * 5.06809 * 18 17 16 20 20 C 1.38714 * 120.00332 * 185.06279 * 18 17 16 21 21 N 1.31508 * 119.99997 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46938 * 90.00031 * 22 20 18 24 24 H 1.48499 * 109.46958 * 209.99818 * 22 20 18 25 25 H 1.48499 * 109.47119 * 329.99902 * 22 20 18 26 26 C 1.39179 * 120.19950 * 359.76548 * 16 15 14 27 27 C 1.37588 * 120.10516 * 359.95382 * 26 16 15 28 28 H 1.09004 * 109.47274 * 325.72521 * 1 2 3 29 29 H 1.09001 * 109.47416 * 205.72596 * 1 2 3 30 30 H 1.08999 * 109.46986 * 85.72497 * 1 2 3 31 31 H 1.08998 * 109.47209 * 34.41112 * 3 2 1 32 32 H 1.09003 * 109.47029 * 154.41736 * 3 2 1 33 33 H 1.08999 * 109.46766 * 274.41177 * 3 2 1 34 34 H 1.09001 * 117.49468 * 214.97764 * 4 2 1 35 35 H 1.08997 * 117.49669 * 359.97438 * 4 2 1 36 36 H 1.08997 * 109.47395 * 294.99029 * 7 5 2 37 37 H 1.08994 * 109.47285 * 55.00175 * 7 5 2 38 38 H 0.96996 * 119.99822 * 0.02562 * 8 7 5 39 39 H 1.07994 * 120.00222 * 353.21762 * 11 9 8 40 40 H 1.08002 * 119.99824 * 168.68846 * 12 11 9 41 41 H 1.07999 * 120.04814 * 359.97438 * 14 13 12 42 42 H 1.07998 * 119.95156 * 180.27801 * 15 14 13 43 43 H 0.97010 * 119.99977 * 180.02562 * 21 20 18 44 44 H 1.08005 * 119.94356 * 179.97438 * 26 16 15 45 45 H 1.08000 * 120.05264 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1208 0.7655 5 6 2.2364 -1.1213 -0.7645 6 1 3.1715 -0.8756 -1.2679 7 6 1.3588 -2.1564 -1.4710 8 7 2.2058 -3.0712 -2.2404 9 6 1.6467 -4.0722 -2.9489 10 8 0.4380 -4.2160 -2.9498 11 6 2.4924 -4.9858 -3.7166 12 6 1.9487 -6.0677 -4.3140 13 6 0.5712 -6.4684 -3.9955 14 6 0.1299 -6.4705 -2.6666 15 6 -1.1626 -6.8409 -2.3737 16 6 -2.0274 -7.2237 -3.3947 17 8 -3.2983 -7.5930 -3.1010 18 6 -4.1196 -7.8402 -4.1407 19 1 -3.7344 -7.8208 -5.1495 20 6 -5.4594 -8.1196 -3.9151 21 7 -6.2606 -8.3613 -4.9296 22 14 -6.1257 -8.1525 -2.1702 23 1 -6.6018 -6.7964 -1.7966 24 1 -7.2552 -9.1132 -2.0897 25 1 -5.0499 -8.5739 -1.2374 26 6 -1.5912 -7.2292 -4.7164 27 6 -0.3024 -6.8549 -5.0194 28 1 -0.3634 0.8492 0.5788 29 1 -0.3634 -0.9258 0.4461 30 1 -0.3633 0.0766 -1.0248 31 1 1.5817 2.0738 0.5807 32 1 3.1829 1.3084 0.4438 33 1 2.2753 1.7422 -1.0246 34 1 3.1715 -0.8747 1.2686 35 1 1.6111 -1.8578 1.2693 36 1 0.7943 -2.7213 -0.7291 37 1 0.6679 -1.6485 -2.1438 38 1 3.1690 -2.9569 -2.2394 39 1 3.5516 -4.7950 -3.8055 40 1 2.5263 -6.6387 -5.0259 41 1 0.8016 -6.1778 -1.8733 42 1 -1.5052 -6.8384 -1.3495 43 1 -7.1977 -8.5563 -4.7718 44 1 -2.2657 -7.5274 -5.5055 45 1 0.0353 -6.8598 -6.0452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491860393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:28 Heat of formation + Delta-G solvation = -12.926147 kcal Electronic energy + Delta-G solvation = -25178.969727 eV Core-core repulsion = 21548.800966 eV Total energy + Delta-G solvation = -3630.168761 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -41.18546 -40.56215 -39.57391 -38.24230 -35.41696 -34.64864 -34.08347 -31.86352 -30.79694 -29.77251 -28.67219 -27.66729 -27.04798 -24.19642 -23.59402 -22.40984 -22.12269 -20.69699 -19.82439 -19.44948 -19.05507 -18.03111 -17.21471 -16.62391 -16.36751 -16.21639 -15.72545 -15.63660 -15.50932 -15.25507 -14.90964 -14.73688 -14.58779 -14.30036 -14.26343 -14.18128 -13.93767 -13.71182 -13.39179 -13.13487 -13.07329 -12.88939 -12.66927 -12.50716 -12.32645 -12.29033 -11.96755 -11.96520 -11.34536 -11.06041 -10.95491 -10.82351 -10.44758 -10.43765 -9.99482 -9.59162 -8.61491 -8.52859 -6.23772 -0.03629 0.67386 1.08567 1.27495 1.33965 1.49012 2.25865 2.29227 2.47316 2.78862 2.79655 3.03727 3.22163 3.62807 3.79682 3.86468 3.99108 4.05958 4.12063 4.15537 4.16169 4.26109 4.51639 4.54440 4.58401 4.70310 4.77163 4.77793 4.82900 4.92610 4.93112 5.02927 5.04235 5.07013 5.18061 5.20439 5.21897 5.27631 5.40170 5.43386 5.44450 5.57422 5.67143 5.77210 5.82492 5.89586 6.25573 6.73231 6.81323 7.45389 7.57143 8.58803 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.002943 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.216199 B = 9512.273271 C =11092.810143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.124 4.124 3 C -0.112 4.112 4 C -0.163 4.163 5 C -0.157 4.157 6 H 0.129 0.871 7 C 0.156 3.844 8 N -0.713 5.713 9 C 0.524 3.476 10 O -0.570 6.570 11 C -0.226 4.226 12 C 0.000 4.000 13 C -0.150 4.150 14 C 0.011 3.989 15 C -0.210 4.210 16 C 0.133 3.867 17 O -0.244 6.244 18 C -0.401 4.401 19 H 0.082 0.918 20 C 0.011 3.989 21 N -0.921 5.921 22 Si 0.970 3.030 23 H -0.268 1.268 24 H -0.262 1.262 25 H -0.265 1.265 26 C -0.253 4.253 27 C -0.053 4.053 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.416 0.584 39 H 0.176 0.824 40 H 0.169 0.831 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.286 0.714 44 H 0.109 0.891 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.459 16.083 8.985 31.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.124 4.124 3 C -0.170 4.170 4 C -0.200 4.200 5 C -0.175 4.175 6 H 0.147 0.853 7 C 0.032 3.968 8 N -0.365 5.365 9 C 0.314 3.686 10 O -0.451 6.451 11 C -0.246 4.246 12 C -0.019 4.019 13 C -0.151 4.151 14 C -0.007 4.007 15 C -0.229 4.229 16 C 0.083 3.917 17 O -0.151 6.151 18 C -0.477 4.477 19 H 0.100 0.900 20 C -0.187 4.187 21 N -0.561 5.561 22 Si 0.792 3.208 23 H -0.193 1.193 24 H -0.186 1.186 25 H -0.189 1.189 26 C -0.272 4.272 27 C -0.071 4.071 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.253 0.747 39 H 0.193 0.807 40 H 0.186 0.814 41 H 0.142 0.858 42 H 0.134 0.866 43 H 0.095 0.905 44 H 0.127 0.873 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 24.281 15.927 9.142 30.444 hybrid contribution -0.812 -0.127 0.128 0.831 sum 23.469 15.800 9.271 29.772 Atomic orbital electron populations 1.21407 0.92776 1.02156 1.01742 1.21687 0.94581 0.92140 1.04035 1.21366 1.00375 0.92913 1.02296 1.23407 1.02890 1.00713 0.93016 1.22547 1.01381 0.99054 0.94561 0.85306 1.20674 0.92582 0.89756 0.93815 1.45824 1.11263 1.30536 1.48920 1.19136 0.88251 0.81881 0.79320 1.90999 1.16866 1.73017 1.64171 1.23081 1.01191 0.96571 1.03742 1.22583 0.91212 0.94073 0.94046 1.18933 0.96073 1.07404 0.92704 1.20729 0.93096 0.90880 0.96027 1.20236 0.94766 1.10447 0.97465 1.19738 0.84455 0.93056 0.94411 1.83447 1.18950 1.77443 1.35300 1.20763 0.90849 1.49189 0.86937 0.90046 1.25281 0.94574 0.95467 1.03410 1.69705 1.06393 1.47454 1.32573 0.85240 0.78214 0.78966 0.78406 1.19280 1.18602 1.18936 1.21119 0.98720 1.11677 0.95691 1.21164 0.91620 0.94826 0.99506 0.91007 0.93259 0.92905 0.91629 0.91275 0.92011 0.86908 0.89518 0.93407 0.93312 0.74669 0.80675 0.81400 0.85790 0.86594 0.90461 0.87265 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 8.86 71.98 0.64 -1.37 16 2 C -0.12 -1.65 2.70 -52.18 -0.14 -1.80 16 3 C -0.11 -1.10 9.85 71.98 0.71 -0.39 16 4 C -0.16 -2.02 9.47 30.60 0.29 -1.73 16 5 C -0.16 -2.06 5.57 -10.80 -0.06 -2.12 16 6 H 0.13 1.19 8.04 -2.39 -0.02 1.17 16 7 C 0.16 3.12 5.04 86.38 0.44 3.56 16 8 N -0.71 -12.79 5.55 -467.49 -2.60 -15.39 16 9 C 0.52 13.29 6.77 86.33 0.58 13.87 16 10 O -0.57 -21.12 12.18 -4.42 -0.05 -21.17 16 11 C -0.23 -4.15 9.90 23.62 0.23 -3.92 16 12 C 0.00 0.00 9.80 23.82 0.23 0.24 16 13 C -0.15 -5.10 4.54 -20.13 -0.09 -5.19 16 14 C 0.01 0.41 6.59 22.55 0.15 0.56 16 15 C -0.21 -9.47 9.97 22.35 0.22 -9.25 16 16 C 0.13 6.93 6.66 22.72 0.15 7.08 16 17 O -0.24 -14.38 8.57 -20.23 -0.17 -14.56 16 18 C -0.40 -25.05 9.94 67.93 0.68 -24.37 16 19 H 0.08 5.30 5.41 -2.91 -0.02 5.29 16 20 C 0.01 0.68 5.49 84.86 0.47 1.15 16 21 N -0.92 -56.86 13.96 21.62 0.30 -56.55 16 22 Si 0.97 47.74 28.62 68.60 1.96 49.70 16 23 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.26 -13.12 7.11 99.48 0.71 -12.41 16 26 C -0.25 -12.22 9.14 22.34 0.20 -12.02 16 27 C -0.05 -2.03 9.78 22.55 0.22 -1.81 16 28 H 0.07 0.99 7.92 -2.38 -0.02 0.97 16 29 H 0.05 0.90 7.90 -2.39 -0.02 0.88 16 30 H 0.05 0.95 7.83 -2.39 -0.02 0.93 16 31 H 0.06 0.61 7.92 -2.39 -0.02 0.59 16 32 H 0.07 0.52 7.90 -2.39 -0.02 0.50 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.11 1.00 8.05 -2.39 -0.02 0.98 16 35 H 0.09 1.27 7.94 -2.39 -0.02 1.25 16 36 H 0.05 1.16 7.88 -2.39 -0.02 1.14 16 37 H 0.05 1.19 7.77 -2.39 -0.02 1.18 16 38 H 0.42 4.14 8.38 -92.71 -0.78 3.36 16 39 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 41 H 0.12 4.08 7.02 -2.91 -0.02 4.06 16 42 H 0.12 5.00 8.06 -2.91 -0.02 4.97 16 43 H 0.29 16.10 8.31 -92.70 -0.77 15.33 16 44 H 0.11 5.68 5.62 -2.91 -0.02 5.67 16 45 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -78.70 374.55 4.58 -74.12 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.22 Total: 21.36 kcal Atomic # 6 Polarization: -42.43 SS G_CDS: 4.92 Total: -37.51 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -2.29 Total: -71.94 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.23 Total: -35.73 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.96 Total: 49.70 kcal Total: -78.70 4.58 -74.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491860393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.190 kcal (2) G-P(sol) polarization free energy of solvation -78.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds