Wall clock time and date at job start Tue Mar 31 2020 10:44:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31560 * 1
3 3 Si 1.86801 * 120.00045 * 2 1
4 4 H 1.48500 * 109.47200 * 239.99874 * 3 2 1
5 5 H 1.48499 * 109.46992 * 359.97438 * 3 2 1
6 6 H 1.48499 * 109.47437 * 119.99631 * 3 2 1
7 7 C 1.38653 * 120.00042 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99860 * 179.97438 * 7 2 1
9 9 O 1.34828 * 120.00014 * 0.02562 * 7 2 1
10 10 C 1.35756 * 116.99974 * 185.02434 * 9 7 2
11 11 C 1.38950 * 120.03018 * 354.34814 * 10 9 7
12 12 C 1.38133 * 120.07551 * 179.74483 * 11 10 9
13 13 C 1.38198 * 120.13835 * 0.50861 * 12 11 10
14 14 C 1.38945 * 120.06436 * 359.76939 * 13 12 11
15 15 N 1.39823 * 120.03744 * 179.97438 * 14 13 12
16 16 C 1.34786 * 120.00245 * 215.15259 * 15 14 13
17 17 O 1.21630 * 119.99542 * 355.50569 * 16 15 14
18 18 C 1.47057 * 120.00330 * 175.50389 * 16 15 14
19 19 C 1.33015 * 120.00149 * 180.02562 * 18 16 15
20 20 C 1.50704 * 119.99646 * 179.97438 * 19 18 16
21 21 C 1.52999 * 109.46888 * 239.99451 * 20 19 18
22 22 C 1.52996 * 109.47031 * 180.02562 * 21 20 19
23 23 C 1.53007 * 109.47316 * 60.00464 * 22 21 20
24 24 C 1.52999 * 109.46652 * 300.00138 * 23 22 21
25 25 C 1.52996 * 109.47373 * 59.99897 * 24 23 22
26 26 C 1.38722 * 120.03285 * 174.62520 * 10 9 7
27 27 H 0.96997 * 119.99658 * 0.02562 * 1 2 3
28 28 H 1.07997 * 119.96636 * 0.02562 * 11 10 9
29 29 H 1.08000 * 119.93028 * 180.23323 * 12 11 10
30 30 H 1.07996 * 119.96518 * 179.74611 * 13 12 11
31 31 H 0.97004 * 120.00201 * 35.16128 * 15 14 13
32 32 H 1.08006 * 119.99946 * 359.97438 * 18 16 15
33 33 H 1.07997 * 120.00184 * 0.02562 * 19 18 16
34 34 H 1.08991 * 109.47728 * 0.02562 * 20 19 18
35 35 H 1.08998 * 109.47496 * 300.00355 * 21 20 19
36 36 H 1.09001 * 109.46900 * 60.00962 * 21 20 19
37 37 H 1.09005 * 109.47445 * 300.00394 * 22 21 20
38 38 H 1.09003 * 109.47392 * 180.02562 * 22 21 20
39 39 H 1.08992 * 109.47563 * 179.97438 * 23 22 21
40 40 H 1.09005 * 109.46921 * 59.99608 * 23 22 21
41 41 H 1.08998 * 109.47651 * 299.99459 * 24 23 22
42 42 H 1.09001 * 109.46861 * 179.97438 * 24 23 22
43 43 H 1.08997 * 109.47232 * 179.97438 * 25 24 23
44 44 H 1.09005 * 109.47445 * 59.99767 * 25 24 23
45 45 H 1.08000 * 120.07182 * 359.97438 * 26 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2496 1.6177 0.0000
4 1 3.1034 1.6964 -1.2125
5 1 1.2846 2.7464 -0.0006
6 1 3.1033 1.6965 1.2125
7 6 2.0089 -1.2008 0.0005
8 1 3.0889 -1.2007 0.0001
9 8 1.3347 -2.3684 0.0005
10 6 2.0701 -3.5046 0.1070
11 6 3.4579 -3.4387 0.0914
12 6 4.2071 -4.5937 0.2049
13 6 3.5793 -5.8191 0.3239
14 6 2.1918 -5.8923 0.3344
15 7 1.5572 -7.1324 0.4542
16 6 0.3992 -7.3626 -0.1960
17 8 -0.1360 -6.4665 -0.8206
18 6 -0.2171 -8.6970 -0.1504
19 6 -1.3596 -8.9242 -0.7925
20 6 -1.9908 -10.2919 -0.7462
21 6 -2.1059 -10.8488 -2.1665
22 6 -2.7473 -12.2371 -2.1196
23 6 -4.1415 -12.1340 -1.4977
24 6 -4.0264 -11.5770 -0.0774
25 6 -3.3850 -10.1888 -0.1243
26 6 1.4366 -4.7330 0.2257
27 1 -0.4849 0.8400 -0.0004
28 1 3.9516 -2.4830 -0.0051
29 1 5.2857 -4.5394 0.1963
30 1 4.1677 -6.7207 0.4084
31 1 1.9503 -7.8272 1.0054
32 1 0.2584 -9.4928 0.4038
33 1 -1.8345 -8.1289 -1.3477
34 1 -1.3726 -10.9573 -0.1436
35 1 -2.7245 -10.1834 -2.7688
36 1 -1.1128 -10.9220 -2.6097
37 1 -2.1291 -12.9028 -1.5172
38 1 -2.8290 -12.6341 -3.1315
39 1 -4.5987 -13.1229 -1.4647
40 1 -4.7597 -11.4683 -2.1001
41 1 -3.4083 -12.2427 0.5250
42 1 -5.0196 -11.5032 0.3655
43 1 -3.3034 -9.7918 0.8875
44 1 -4.0032 -9.5231 -0.7267
45 1 0.3580 -4.7871 0.2340
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000491889962.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:44:48
Heat of formation + Delta-G solvation = -43.543100 kcal
Electronic energy + Delta-G solvation = -24736.467382 eV
Core-core repulsion = 21104.970970 eV
Total energy + Delta-G solvation = -3631.496412 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-40.12328 -39.06940 -38.48143 -36.50818 -34.12224 -33.97752 -32.20865 -31.07617
-30.30425 -29.29420 -28.29479 -25.30553 -24.24492 -22.87878 -22.36688 -21.49280
-20.68809 -20.12905 -19.42125 -18.13051 -17.47563 -16.86401 -15.69970 -15.63874
-15.02723 -14.88755 -14.67554 -14.50637 -14.45523 -14.18308 -14.13086 -13.65086
-13.48722 -13.01723 -12.84034 -12.56631 -12.51946 -12.47362 -12.16074 -11.69604
-11.48711 -11.46553 -11.34398 -11.19382 -10.95969 -10.81546 -10.75194 -10.59794
-10.53389 -10.46252 -9.73585 -9.67617 -9.47096 -9.12446 -8.77937 -7.64975
-7.14201 -6.38428 -3.97617 1.27740 2.20208 2.39111 3.16476 3.17763
3.20804 3.33054 3.46573 4.01547 4.28979 4.37873 4.45647 4.62040
4.76587 4.83249 4.93918 4.98883 5.12665 5.16777 5.17260 5.19235
5.25171 5.31978 5.41363 5.50908 5.66155 5.69665 5.72903 5.81215
5.81787 5.87306 5.87823 5.98653 6.07805 6.13544 6.21186 6.28991
6.35632 6.44054 6.75645 6.95341 7.07833 7.12953 7.38277 7.52084
7.77545 7.84415 8.06469 8.43773 9.06285 9.78286 10.79511
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.020368 B = 0.002268 C = 0.002093
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1374.348845 B =12342.547957 C =13376.186416
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.861 5.861
2 C 0.038 3.962
3 Si 0.942 3.058
4 H -0.270 1.270
5 H -0.278 1.278
6 H -0.270 1.270
7 C -0.392 4.392
8 H 0.092 0.908
9 O -0.174 6.174
10 C 0.166 3.834
11 C -0.245 4.245
12 C -0.059 4.059
13 C -0.236 4.236
14 C 0.175 3.825
15 N -0.666 5.666
16 C 0.536 3.464
17 O -0.515 6.515
18 C -0.212 4.212
19 C -0.059 4.059
20 C -0.064 4.064
21 C -0.113 4.113
22 C -0.119 4.119
23 C -0.122 4.122
24 C -0.119 4.119
25 C -0.113 4.113
26 C -0.187 4.187
27 H 0.270 0.730
28 H 0.128 0.872
29 H 0.111 0.889
30 H 0.108 0.892
31 H 0.406 0.594
32 H 0.125 0.875
33 H 0.129 0.871
34 H 0.078 0.922
35 H 0.067 0.933
36 H 0.065 0.935
37 H 0.061 0.939
38 H 0.062 0.938
39 H 0.060 0.940
40 H 0.063 0.937
41 H 0.061 0.939
42 H 0.063 0.937
43 H 0.066 0.934
44 H 0.068 0.932
45 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.609 -24.114 0.131 24.255
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.496 5.496
2 C -0.166 4.166
3 Si 0.766 3.234
4 H -0.195 1.195
5 H -0.203 1.203
6 H -0.195 1.195
7 C -0.468 4.468
8 H 0.109 0.891
9 O -0.077 6.077
10 C 0.111 3.889
11 C -0.265 4.265
12 C -0.078 4.078
13 C -0.257 4.257
14 C 0.081 3.919
15 N -0.310 5.310
16 C 0.326 3.674
17 O -0.392 6.392
18 C -0.233 4.233
19 C -0.078 4.078
20 C -0.082 4.082
21 C -0.150 4.150
22 C -0.156 4.156
23 C -0.159 4.159
24 C -0.156 4.156
25 C -0.151 4.151
26 C -0.208 4.208
27 H 0.080 0.920
28 H 0.145 0.855
29 H 0.129 0.871
30 H 0.126 0.874
31 H 0.241 0.759
32 H 0.143 0.857
33 H 0.146 0.854
34 H 0.097 0.903
35 H 0.086 0.914
36 H 0.084 0.916
37 H 0.080 0.920
38 H 0.081 0.919
39 H 0.079 0.921
40 H 0.081 0.919
41 H 0.080 0.920
42 H 0.082 0.918
43 H 0.085 0.915
44 H 0.086 0.914
45 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -3.467 -23.280 -0.356 23.539
hybrid contribution 0.876 0.460 0.315 1.039
sum -2.590 -22.820 -0.042 22.966
Atomic orbital electron populations
1.70049 1.05962 1.27710 1.45893 1.25305 0.95840 0.98828 0.96621
0.85776 0.78666 0.79788 0.79138 1.19515 1.20316 1.19515 1.21300
0.91789 0.80834 1.52891 0.89055 1.83997 1.34221 1.11329 1.78111
1.19150 0.90025 0.87846 0.91847 1.21176 0.93746 0.99096 1.12501
1.20499 0.98362 0.91744 0.97226 1.20281 0.91898 0.97702 1.15841
1.17190 0.90913 0.83620 1.00159 1.43266 1.24107 1.14630 1.48954
1.18718 0.80702 0.88902 0.79105 1.90877 1.61325 1.45337 1.41618
1.22561 0.98992 0.96121 1.05643 1.23772 0.93461 0.97588 0.93016
1.20445 0.96867 0.93350 0.97572 1.21553 1.01288 0.96572 0.95619
1.21531 0.96383 0.96880 1.00824 1.21564 0.97104 1.00870 0.96403
1.21528 1.00714 0.96456 0.96923 1.21559 0.94930 0.97404 1.01188
1.20188 1.00637 0.88784 1.11193 0.91997 0.85476 0.87063 0.87409
0.75931 0.85686 0.85363 0.90330 0.91394 0.91608 0.91983 0.91879
0.92143 0.91869 0.91976 0.91844 0.91535 0.91371 0.84851
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -26.15 13.67 55.48 0.76 -25.39 16
2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16
3 Si 0.94 21.03 29.55 -169.99 -5.02 16.00 16
4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16
5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16
6 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16
7 C -0.39 -11.34 9.49 30.89 0.29 -11.05 16
8 H 0.09 2.42 5.20 -52.48 -0.27 2.15 16
9 O -0.17 -5.24 9.76 0.04 0.00 -5.24 16
10 C 0.17 4.30 6.64 -39.14 -0.26 4.04 16
11 C -0.25 -5.54 9.16 -39.36 -0.36 -5.91 16
12 C -0.06 -1.11 10.03 -39.63 -0.40 -1.51 16
13 C -0.24 -4.18 9.96 -39.33 -0.39 -4.57 16
14 C 0.17 3.39 6.29 -83.75 -0.53 2.86 16
15 N -0.67 -10.12 5.33 -10.96 -0.06 -10.18 16
16 C 0.54 8.68 7.60 -12.68 -0.10 8.59 16
17 O -0.52 -10.92 13.66 5.25 0.07 -10.85 16
18 C -0.21 -2.39 9.64 -37.82 -0.36 -2.75 16
19 C -0.06 -0.62 8.35 -36.12 -0.30 -0.93 16
20 C -0.06 -0.50 2.49 -91.77 -0.23 -0.73 16
21 C -0.11 -0.83 5.19 -26.73 -0.14 -0.97 16
22 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16
23 C -0.12 -0.74 5.92 -26.73 -0.16 -0.89 16
24 C -0.12 -0.75 5.92 -26.73 -0.16 -0.90 16
25 C -0.11 -0.85 5.18 -26.73 -0.14 -0.99 16
26 C -0.19 -4.46 8.63 -39.20 -0.34 -4.80 16
27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16
28 H 0.13 2.83 5.63 -52.49 -0.30 2.54 16
29 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16
30 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16
31 H 0.41 4.37 8.80 -40.82 -0.36 4.01 16
32 H 0.13 0.99 7.87 -52.48 -0.41 0.57 16
33 H 0.13 1.61 7.49 -52.49 -0.39 1.21 16
34 H 0.08 0.55 7.81 -51.93 -0.41 0.14 16
35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
39 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16
40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16
43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16
44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
45 H 0.13 3.42 6.23 -52.49 -0.33 3.09 16
LS Contribution 370.09 15.07 5.58 5.58
Total: -1.00 -34.49 370.09 -9.17 -43.66
By element:
Atomic # 1 Polarization: 13.49 SS G_CDS: -6.67 Total: 6.82 kcal
Atomic # 6 Polarization: -16.57 SS G_CDS: -3.82 Total: -20.40 kcal
Atomic # 7 Polarization: -36.27 SS G_CDS: 0.70 Total: -35.57 kcal
Atomic # 8 Polarization: -16.16 SS G_CDS: 0.07 Total: -16.09 kcal
Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -34.49 -9.17 -43.66 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000491889962.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.113 kcal
(2) G-P(sol) polarization free energy of solvation -34.486 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.373 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.656 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.543 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds