Wall clock time and date at job start Tue Mar 31 2020 10:44:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31560 * 1
3 3 Si 1.86801 * 120.00045 * 2 1
4 4 H 1.48500 * 109.47200 * 239.99874 * 3 2 1
5 5 H 1.48499 * 109.46992 * 359.97438 * 3 2 1
6 6 H 1.48499 * 109.47437 * 119.99631 * 3 2 1
7 7 C 1.38653 * 120.00042 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99860 * 179.97438 * 7 2 1
9 9 O 1.34828 * 120.00014 * 0.02562 * 7 2 1
10 10 C 1.35756 * 116.99974 * 185.02434 * 9 7 2
11 11 C 1.38950 * 120.03018 * 354.34814 * 10 9 7
12 12 C 1.38133 * 120.07551 * 179.74483 * 11 10 9
13 13 C 1.38198 * 120.13835 * 0.50861 * 12 11 10
14 14 C 1.38945 * 120.06436 * 359.76939 * 13 12 11
15 15 N 1.39823 * 120.03744 * 179.97438 * 14 13 12
16 16 C 1.34786 * 120.00245 * 215.15259 * 15 14 13
17 17 O 1.21630 * 119.99542 * 355.50569 * 16 15 14
18 18 C 1.47057 * 120.00330 * 175.50389 * 16 15 14
19 19 C 1.33015 * 120.00149 * 180.02562 * 18 16 15
20 20 C 1.50704 * 119.99646 * 179.97438 * 19 18 16
21 21 C 1.52999 * 109.46888 * 239.99451 * 20 19 18
22 22 C 1.52996 * 109.47031 * 180.02562 * 21 20 19
23 23 C 1.53007 * 109.47316 * 60.00464 * 22 21 20
24 24 C 1.52999 * 109.46652 * 300.00138 * 23 22 21
25 25 C 1.52996 * 109.47373 * 59.99897 * 24 23 22
26 26 C 1.38722 * 120.03285 * 174.62520 * 10 9 7
27 27 H 0.96997 * 119.99658 * 0.02562 * 1 2 3
28 28 H 1.07997 * 119.96636 * 0.02562 * 11 10 9
29 29 H 1.08000 * 119.93028 * 180.23323 * 12 11 10
30 30 H 1.07996 * 119.96518 * 179.74611 * 13 12 11
31 31 H 0.97004 * 120.00201 * 35.16128 * 15 14 13
32 32 H 1.08006 * 119.99946 * 359.97438 * 18 16 15
33 33 H 1.07997 * 120.00184 * 0.02562 * 19 18 16
34 34 H 1.08991 * 109.47728 * 0.02562 * 20 19 18
35 35 H 1.08998 * 109.47496 * 300.00355 * 21 20 19
36 36 H 1.09001 * 109.46900 * 60.00962 * 21 20 19
37 37 H 1.09005 * 109.47445 * 300.00394 * 22 21 20
38 38 H 1.09003 * 109.47392 * 180.02562 * 22 21 20
39 39 H 1.08992 * 109.47563 * 179.97438 * 23 22 21
40 40 H 1.09005 * 109.46921 * 59.99608 * 23 22 21
41 41 H 1.08998 * 109.47651 * 299.99459 * 24 23 22
42 42 H 1.09001 * 109.46861 * 179.97438 * 24 23 22
43 43 H 1.08997 * 109.47232 * 179.97438 * 25 24 23
44 44 H 1.09005 * 109.47445 * 59.99767 * 25 24 23
45 45 H 1.08000 * 120.07182 * 359.97438 * 26 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2496 1.6177 0.0000
4 1 3.1034 1.6964 -1.2125
5 1 1.2846 2.7464 -0.0006
6 1 3.1033 1.6965 1.2125
7 6 2.0089 -1.2008 0.0005
8 1 3.0889 -1.2007 0.0001
9 8 1.3347 -2.3684 0.0005
10 6 2.0701 -3.5046 0.1070
11 6 3.4579 -3.4387 0.0914
12 6 4.2071 -4.5937 0.2049
13 6 3.5793 -5.8191 0.3239
14 6 2.1918 -5.8923 0.3344
15 7 1.5572 -7.1324 0.4542
16 6 0.3992 -7.3626 -0.1960
17 8 -0.1360 -6.4665 -0.8206
18 6 -0.2171 -8.6970 -0.1504
19 6 -1.3596 -8.9242 -0.7925
20 6 -1.9908 -10.2919 -0.7462
21 6 -2.1059 -10.8488 -2.1665
22 6 -2.7473 -12.2371 -2.1196
23 6 -4.1415 -12.1340 -1.4977
24 6 -4.0264 -11.5770 -0.0774
25 6 -3.3850 -10.1888 -0.1243
26 6 1.4366 -4.7330 0.2257
27 1 -0.4849 0.8400 -0.0004
28 1 3.9516 -2.4830 -0.0051
29 1 5.2857 -4.5394 0.1963
30 1 4.1677 -6.7207 0.4084
31 1 1.9503 -7.8272 1.0054
32 1 0.2584 -9.4928 0.4038
33 1 -1.8345 -8.1289 -1.3477
34 1 -1.3726 -10.9573 -0.1436
35 1 -2.7245 -10.1834 -2.7688
36 1 -1.1128 -10.9220 -2.6097
37 1 -2.1291 -12.9028 -1.5172
38 1 -2.8290 -12.6341 -3.1315
39 1 -4.5987 -13.1229 -1.4647
40 1 -4.7597 -11.4683 -2.1001
41 1 -3.4083 -12.2427 0.5250
42 1 -5.0196 -11.5032 0.3655
43 1 -3.3034 -9.7918 0.8875
44 1 -4.0032 -9.5231 -0.7267
45 1 0.3580 -4.7871 0.2340
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000491889962.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:44:47
Heat of formation + Delta-G solvation = -65.248053 kcal
Electronic energy + Delta-G solvation = -24737.408580 eV
Core-core repulsion = 21104.970970 eV
Total energy + Delta-G solvation = -3632.437609 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.57556 -40.38258 -39.58724 -38.23126 -35.55582 -34.92226 -34.27174 -31.61899
-31.48099 -30.78688 -29.75535 -27.36045 -25.36239 -23.69252 -23.41842 -23.04661
-21.97537 -20.78158 -20.48633 -19.90792 -19.10918 -18.27566 -17.23435 -16.77419
-16.47303 -16.36143 -16.03880 -15.81468 -15.50001 -15.32825 -15.12888 -15.05647
-14.82805 -14.43530 -14.25882 -13.60895 -13.57453 -13.32788 -13.20169 -13.05864
-13.02372 -12.92308 -12.64994 -12.37329 -12.17169 -12.00809 -11.93983 -11.50482
-11.35973 -11.32392 -11.20252 -11.09737 -10.77975 -10.73122 -10.33948 -9.35671
-8.88322 -8.47474 -6.17438 0.13737 0.62838 0.71044 1.33535 1.45958
1.51525 2.05405 2.19506 2.22573 2.82956 3.14394 3.41721 3.62986
3.77880 3.90532 4.02846 4.11872 4.13666 4.32489 4.34953 4.38846
4.41012 4.42168 4.61566 4.62405 4.64738 4.70172 4.73021 4.75746
4.95944 5.04329 5.09862 5.13575 5.17628 5.27238 5.27395 5.28861
5.39020 5.43339 5.44566 5.46736 5.52006 5.62121 5.62473 5.72736
6.02015 6.19693 6.50397 6.95799 7.18858 7.78698 8.76380
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.020368 B = 0.002268 C = 0.002093
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1374.348845 B =12342.547957 C =13376.186416
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.926 5.926
2 C -0.029 4.029
3 Si 1.025 2.975
4 H -0.255 1.255
5 H -0.273 1.273
6 H -0.253 1.253
7 C -0.415 4.415
8 H 0.107 0.893
9 O -0.236 6.236
10 C 0.124 3.876
11 C -0.255 4.255
12 C -0.049 4.049
13 C -0.204 4.204
14 C 0.181 3.819
15 N -0.649 5.649
16 C 0.528 3.472
17 O -0.578 6.578
18 C -0.211 4.211
19 C -0.050 4.050
20 C -0.055 4.055
21 C -0.114 4.114
22 C -0.115 4.115
23 C -0.123 4.123
24 C -0.115 4.115
25 C -0.115 4.115
26 C -0.216 4.216
27 H 0.272 0.728
28 H 0.125 0.875
29 H 0.162 0.838
30 H 0.166 0.834
31 H 0.432 0.568
32 H 0.174 0.826
33 H 0.097 0.903
34 H 0.102 0.898
35 H 0.054 0.946
36 H 0.067 0.933
37 H 0.073 0.927
38 H 0.067 0.933
39 H 0.071 0.929
40 H 0.054 0.946
41 H 0.073 0.927
42 H 0.065 0.935
43 H 0.063 0.937
44 H 0.054 0.946
45 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.733 -27.652 0.977 27.679
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.564 5.564
2 C -0.225 4.225
3 Si 0.844 3.156
4 H -0.180 1.180
5 H -0.197 1.197
6 H -0.177 1.177
7 C -0.491 4.491
8 H 0.124 0.876
9 O -0.143 6.143
10 C 0.073 3.927
11 C -0.275 4.275
12 C -0.067 4.067
13 C -0.224 4.224
14 C 0.086 3.914
15 N -0.295 5.295
16 C 0.321 3.679
17 O -0.458 6.458
18 C -0.231 4.231
19 C -0.070 4.070
20 C -0.074 4.074
21 C -0.151 4.151
22 C -0.152 4.152
23 C -0.161 4.161
24 C -0.152 4.152
25 C -0.153 4.153
26 C -0.238 4.238
27 H 0.081 0.919
28 H 0.142 0.858
29 H 0.179 0.821
30 H 0.183 0.817
31 H 0.273 0.727
32 H 0.191 0.809
33 H 0.115 0.885
34 H 0.120 0.880
35 H 0.073 0.927
36 H 0.085 0.915
37 H 0.092 0.908
38 H 0.086 0.914
39 H 0.090 0.910
40 H 0.073 0.927
41 H 0.092 0.908
42 H 0.084 0.916
43 H 0.082 0.918
44 H 0.072 0.928
45 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -0.075 -26.926 0.522 26.931
hybrid contribution -0.120 1.201 0.042 1.208
sum -0.195 -25.725 0.563 25.731
Atomic orbital electron populations
1.70227 1.08329 1.28891 1.48939 1.26758 0.96896 1.03113 0.95780
0.84568 0.77282 0.73671 0.80128 1.17954 1.19740 1.17716 1.21896
0.92733 0.81250 1.53234 0.87554 1.83964 1.36254 1.12738 1.81304
1.19699 0.91833 0.87365 0.93766 1.21339 0.92375 1.00904 1.12860
1.21063 1.00630 0.90396 0.94617 1.20925 0.90938 0.99521 1.11024
1.17371 0.91915 0.83782 0.98312 1.43183 1.23793 1.13634 1.48920
1.19654 0.80325 0.90158 0.77801 1.90876 1.62878 1.47743 1.44292
1.22596 0.99177 0.94332 1.06994 1.23923 0.93122 0.98427 0.91560
1.20461 0.96978 0.91586 0.98330 1.21564 1.01307 0.97249 0.95020
1.21514 0.96339 0.95966 1.01410 1.21581 0.97117 1.01268 0.96093
1.21511 1.00939 0.95509 0.97288 1.21574 0.94763 0.98256 1.00705
1.20210 0.99534 0.90369 1.13653 0.91868 0.85773 0.82066 0.81671
0.72729 0.80890 0.88456 0.87989 0.92714 0.91473 0.90831 0.91421
0.91021 0.92725 0.90829 0.91590 0.91778 0.92751 0.88392
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -60.23 13.67 21.61 0.30 -59.93 16
2 C -0.03 -1.72 5.49 84.83 0.47 -1.25 16
3 Si 1.03 44.51 29.55 68.60 2.03 46.53 16
4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16
5 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16
6 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16
7 C -0.42 -25.52 9.49 67.92 0.64 -24.87 16
8 H 0.11 5.87 5.20 -2.91 -0.02 5.86 16
9 O -0.24 -15.50 9.76 -22.78 -0.22 -15.72 16
10 C 0.12 6.83 6.64 22.56 0.15 6.98 16
11 C -0.26 -11.52 9.16 22.42 0.21 -11.32 16
12 C -0.05 -1.64 10.03 22.24 0.22 -1.41 16
13 C -0.20 -6.23 9.96 22.43 0.22 -6.01 16
14 C 0.18 6.78 6.29 38.17 0.24 7.02 16
15 N -0.65 -18.31 5.33 -306.83 -1.63 -19.94 16
16 C 0.53 17.02 7.60 86.55 0.66 17.68 16
17 O -0.58 -26.13 13.66 -4.13 -0.06 -26.19 16
18 C -0.21 -4.34 9.64 23.42 0.23 -4.11 16
19 C -0.05 -1.05 8.35 24.52 0.20 -0.84 16
20 C -0.06 -0.76 2.49 -11.54 -0.03 -0.79 16
21 C -0.11 -1.51 5.19 30.59 0.16 -1.35 16
22 C -0.11 -1.15 5.92 30.60 0.18 -0.97 16
23 C -0.12 -1.26 5.92 30.60 0.18 -1.08 16
24 C -0.12 -1.22 5.92 30.59 0.18 -1.04 16
25 C -0.12 -1.62 5.18 30.59 0.16 -1.46 16
26 C -0.22 -10.90 8.63 22.52 0.19 -10.71 16
27 H 0.27 16.20 8.31 -92.71 -0.77 15.42 16
28 H 0.12 5.58 5.63 -2.91 -0.02 5.56 16
29 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16
30 H 0.17 3.33 8.06 -2.91 -0.02 3.30 16
31 H 0.43 7.36 8.80 -92.70 -0.82 6.55 16
32 H 0.17 1.88 7.87 -2.91 -0.02 1.85 16
33 H 0.10 2.65 7.49 -2.91 -0.02 2.63 16
34 H 0.10 1.00 7.81 -2.39 -0.02 0.99 16
35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16
36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
37 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16
38 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16
39 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16
40 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16
41 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16
42 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16
43 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
44 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16
45 H 0.10 5.57 6.23 -2.91 -0.02 5.55 16
Total: -1.00 -86.67 370.09 4.86 -81.82
By element:
Atomic # 1 Polarization: 28.79 SS G_CDS: 0.18 Total: 28.97 kcal
Atomic # 6 Polarization: -39.80 SS G_CDS: 4.27 Total: -35.53 kcal
Atomic # 7 Polarization: -78.54 SS G_CDS: -1.34 Total: -79.88 kcal
Atomic # 8 Polarization: -41.63 SS G_CDS: -0.28 Total: -41.91 kcal
Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal
Total: -86.67 4.86 -81.82 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000491889962.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.567 kcal
(2) G-P(sol) polarization free energy of solvation -86.672 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.105 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.815 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.248 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds