Wall clock time and date at job start Tue Mar 31 2020 12:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 112.90126 * 2 1 4 4 C 1.53774 * 113.61518 * 131.24990 * 2 1 3 5 5 C 1.53782 * 87.08144 * 89.11880 * 4 2 1 6 6 C 1.53776 * 113.61270 * 228.75069 * 2 1 3 7 7 H 1.09000 * 113.61262 * 156.33712 * 6 2 1 8 8 N 1.46499 * 113.69680 * 25.44007 * 6 2 1 9 9 C 1.34779 * 120.00124 * 157.95910 * 8 6 2 10 10 O 1.21717 * 119.99732 * 0.02562 * 9 8 6 11 11 C 1.46254 * 119.99672 * 180.02562 * 9 8 6 12 12 C 1.35022 * 119.99543 * 173.21413 * 11 9 8 13 13 C 1.46961 * 120.00442 * 348.68390 * 12 11 9 14 14 C 1.40022 * 120.09666 * 316.40964 * 13 12 11 15 15 C 1.37599 * 119.89727 * 179.74220 * 14 13 12 16 16 C 1.39184 * 120.09951 * 0.50747 * 15 14 13 17 17 O 1.35566 * 119.89646 * 179.74635 * 16 15 14 18 18 C 1.34782 * 116.99794 * 174.38605 * 17 16 15 19 19 H 1.08003 * 120.00169 * 5.05716 * 18 17 16 20 20 C 1.38720 * 120.00109 * 185.06156 * 18 17 16 21 21 N 1.31506 * 119.99685 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00071 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47108 * 59.99757 * 22 20 18 24 24 H 1.48504 * 109.47132 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47027 * 299.99680 * 22 20 18 26 26 C 1.39173 * 120.20115 * 359.76700 * 16 15 14 27 27 C 1.37603 * 120.10385 * 359.97438 * 26 16 15 28 28 H 1.08999 * 109.47212 * 308.25349 * 1 2 3 29 29 H 1.09002 * 109.47372 * 68.25788 * 1 2 3 30 30 H 1.09006 * 109.47200 * 188.25517 * 1 2 3 31 31 H 1.09007 * 109.46624 * 171.75154 * 3 2 1 32 32 H 1.09000 * 109.47086 * 291.74447 * 3 2 1 33 33 H 1.08992 * 109.47177 * 51.74711 * 3 2 1 34 34 H 1.09003 * 113.61470 * 334.56846 * 4 2 1 35 35 H 1.09000 * 113.61694 * 203.66831 * 4 2 1 36 36 H 1.08995 * 113.61155 * 139.98327 * 5 4 2 37 37 H 1.09001 * 113.61235 * 270.88032 * 5 4 2 38 38 H 0.97002 * 119.99612 * 337.95653 * 8 6 2 39 39 H 1.08001 * 120.00345 * 353.21025 * 11 9 8 40 40 H 1.08005 * 119.99747 * 168.68532 * 12 11 9 41 41 H 1.08003 * 120.05422 * 359.97438 * 14 13 12 42 42 H 1.07995 * 119.95193 * 180.27469 * 15 14 13 43 43 H 0.97007 * 119.99935 * 180.02562 * 21 20 18 44 44 H 1.07994 * 119.94688 * 180.02562 * 26 16 15 45 45 H 1.07994 * 120.05382 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1254 1.4094 0.0000 4 6 2.1460 -0.9290 1.0593 5 6 2.0930 -2.0425 0.0000 6 6 2.1460 -0.9290 -1.0594 7 1 3.1590 -0.6498 -1.3489 8 7 1.2718 -1.1714 -2.2097 9 6 1.7987 -1.5710 -3.3841 10 8 3.0008 -1.7310 -3.4888 11 6 0.9260 -1.8124 -4.5327 12 6 1.4615 -2.0789 -5.7432 13 6 2.9006 -1.8841 -5.9691 14 6 3.5385 -0.7361 -5.4836 15 6 4.8871 -0.5604 -5.6929 16 6 5.6149 -1.5167 -6.3951 17 8 6.9423 -1.3370 -6.6034 18 6 7.6128 -2.3503 -7.1868 19 1 7.0777 -3.2196 -7.5396 20 6 8.9902 -2.2767 -7.3340 21 7 9.6417 -1.2181 -6.9048 22 14 9.9195 -3.6813 -8.1419 23 1 9.4203 -3.8731 -9.5273 24 1 11.3688 -3.3597 -8.1786 25 1 9.7082 -4.9277 -7.3626 26 6 4.9838 -2.6566 -6.8844 27 6 3.6367 -2.8432 -6.6753 28 1 -0.3633 0.6363 0.8070 29 1 -0.3634 0.3807 -0.9546 30 1 -0.3634 -1.0171 0.1476 31 1 3.2037 1.3482 0.1474 32 1 1.9161 1.8923 -0.9545 33 1 1.6807 1.9917 0.8069 34 1 1.4945 -1.1086 1.9146 35 1 3.1590 -0.6498 1.3490 36 1 2.9717 -2.6873 0.0001 37 1 1.1569 -2.6010 0.0000 38 1 0.3138 -1.0443 -2.1261 39 1 -0.1467 -1.7777 -4.4126 40 1 0.8323 -2.4351 -6.5455 41 1 2.9737 0.0087 -4.9425 42 1 5.3809 0.3226 -5.3150 43 1 10.6048 -1.1664 -7.0081 44 1 5.5526 -3.3962 -7.4284 45 1 3.1479 -3.7283 -7.0550 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492830699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:49 Heat of formation + Delta-G solvation = 3.309727 kcal Electronic energy + Delta-G solvation = -25746.899171 eV Core-core repulsion = 22117.434450 eV Total energy + Delta-G solvation = -3629.464721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.53645 -39.18514 -38.37788 -36.35730 -33.34715 -32.99799 -32.08237 -30.83832 -30.08751 -28.11340 -27.77561 -25.68273 -25.11503 -22.89583 -22.44760 -21.73094 -20.84348 -19.50058 -18.37510 -17.87063 -17.10669 -16.67974 -16.30668 -15.22372 -14.81300 -14.70989 -14.49670 -14.31713 -14.13275 -13.58292 -13.50917 -13.34872 -13.28740 -13.10574 -12.77865 -12.55352 -12.50681 -12.38826 -12.15470 -11.81820 -11.68220 -11.66561 -11.36206 -11.03055 -10.91412 -10.66142 -10.61660 -10.46718 -10.39679 -10.36431 -9.44768 -9.35630 -9.12950 -8.82273 -8.66518 -7.88371 -6.83133 -6.43394 -3.99197 1.28238 2.45568 2.73687 3.15026 3.17822 3.19209 3.43149 3.66236 3.99259 4.16325 4.37311 4.56253 4.72650 4.75298 4.95565 5.10045 5.15063 5.25721 5.27783 5.32754 5.35656 5.38595 5.55025 5.58044 5.59633 5.68399 5.70577 5.76365 5.77045 5.86757 5.88048 5.97721 6.12351 6.22481 6.28422 6.37543 6.47385 6.62959 6.68610 6.82460 7.06782 7.14839 7.39392 7.48429 7.53246 7.75766 7.95400 8.03303 8.61801 9.02205 9.74480 10.74472 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017443 B = 0.002922 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.872321 B = 9580.927429 C =10430.734929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.131 4.131 5 C -0.154 4.154 6 C 0.136 3.864 7 H 0.114 0.886 8 N -0.726 5.726 9 C 0.538 3.462 10 O -0.511 6.511 11 C -0.268 4.268 12 C 0.027 3.973 13 C -0.189 4.189 14 C 0.013 3.987 15 C -0.203 4.203 16 C 0.172 3.828 17 O -0.173 6.173 18 C -0.390 4.390 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.861 5.861 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.251 4.251 27 C -0.042 4.042 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.394 0.606 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.271 0.729 44 H 0.125 0.875 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.929 0.913 11.634 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.096 4.096 3 C -0.194 4.194 4 C -0.169 4.169 5 C -0.193 4.193 6 C 0.030 3.970 7 H 0.132 0.868 8 N -0.378 5.378 9 C 0.328 3.672 10 O -0.388 6.388 11 C -0.289 4.289 12 C 0.007 3.993 13 C -0.190 4.190 14 C -0.005 4.005 15 C -0.223 4.223 16 C 0.117 3.883 17 O -0.075 6.075 18 C -0.466 4.466 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.194 1.194 26 C -0.270 4.270 27 C -0.060 4.060 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.229 0.771 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.119 0.881 42 H 0.131 0.869 43 H 0.081 0.919 44 H 0.143 0.857 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.614 1.077 11.597 21.958 hybrid contribution -0.132 -0.764 -0.225 0.808 sum -18.746 0.312 11.373 21.928 Atomic orbital electron populations 1.21571 0.93247 1.02035 1.02050 1.22256 0.95876 0.95127 0.96343 1.21739 1.00813 0.95055 1.01826 1.22895 1.01298 0.96269 0.96424 1.23384 1.02547 0.97242 0.96114 1.22532 0.95859 0.95041 0.83567 0.86838 1.46009 1.10317 1.70358 1.11156 1.18533 0.88609 0.76957 0.83098 1.90989 1.14808 1.49734 1.83228 1.22618 0.98714 1.14057 0.93522 1.22328 0.94272 0.87877 0.94817 1.18287 0.92525 0.98732 1.09437 1.20432 0.92964 0.95054 0.92067 1.20002 0.93779 1.01251 1.07218 1.19521 0.85062 0.92572 0.91168 1.83904 1.15009 1.40471 1.68148 1.21347 0.89826 0.97868 1.37603 0.88958 1.25317 0.95593 0.98312 0.97314 1.70016 1.08952 1.27556 1.42984 0.85774 0.78368 0.79840 0.79420 1.19458 1.20262 1.19445 1.20945 0.95158 1.00956 1.09958 1.20739 0.93566 0.96586 0.95112 0.91998 0.92147 0.92200 0.92184 0.92379 0.92561 0.91105 0.89753 0.91005 0.90086 0.77074 0.86300 0.86158 0.88130 0.86885 0.91925 0.85685 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 7.97 37.16 0.30 -0.57 16 2 C -0.10 -0.80 1.37 -153.70 -0.21 -1.01 16 3 C -0.14 -1.17 9.17 37.16 0.34 -0.82 16 4 C -0.13 -1.08 7.21 -25.92 -0.19 -1.27 16 5 C -0.15 -1.54 7.53 -25.92 -0.20 -1.74 16 6 C 0.14 1.53 3.65 -67.12 -0.24 1.28 16 7 H 0.11 1.61 7.49 -51.93 -0.39 1.22 16 8 N -0.73 -8.21 5.26 -54.46 -0.29 -8.50 16 9 C 0.54 8.07 6.77 -13.04 -0.09 7.98 16 10 O -0.51 -10.12 11.81 5.17 0.06 -10.06 16 11 C -0.27 -3.44 9.90 -37.51 -0.37 -3.81 16 12 C 0.03 0.38 9.80 -37.19 -0.36 0.02 16 13 C -0.19 -3.55 4.54 -105.03 -0.48 -4.03 16 14 C 0.01 0.27 6.59 -39.15 -0.26 0.01 16 15 C -0.20 -4.74 9.97 -39.46 -0.39 -5.13 16 16 C 0.17 4.43 6.66 -38.88 -0.26 4.17 16 17 O -0.17 -5.14 9.74 0.75 0.01 -5.14 16 18 C -0.39 -11.25 9.48 30.91 0.29 -10.95 16 19 H 0.09 2.46 5.18 -52.48 -0.27 2.19 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 21 N -0.86 -25.74 13.67 55.48 0.76 -24.98 16 22 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 26 C -0.25 -5.81 9.14 -39.47 -0.36 -6.17 16 27 C -0.04 -0.82 9.78 -39.15 -0.38 -1.21 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.38 7.23 -51.93 -0.38 0.00 16 30 H 0.06 0.37 7.32 -51.93 -0.38 -0.01 16 31 H 0.06 0.54 8.01 -51.93 -0.42 0.12 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 35 H 0.08 0.70 8.01 -51.93 -0.42 0.29 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.74 7.63 -51.93 -0.40 0.35 16 38 H 0.39 3.33 6.65 -40.82 -0.27 3.06 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 41 H 0.10 1.87 7.02 -52.48 -0.37 1.50 16 42 H 0.11 2.57 8.06 -52.49 -0.42 2.15 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.13 2.86 5.62 -52.49 -0.29 2.57 16 45 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -33.55 367.77 -8.42 -41.97 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.52 Total: 7.52 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -2.96 Total: -22.26 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.47 Total: -33.48 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.07 Total: -15.19 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.55 -8.42 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492830699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.275 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds