Wall clock time and date at job start Tue Mar 31 2020 12:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 119.99893 * 2 1 4 4 O 1.21723 * 119.99858 * 179.97438 * 3 2 1 5 5 C 1.46254 * 119.99974 * 0.02562 * 3 2 1 6 6 C 1.35019 * 119.99982 * 173.22690 * 5 3 2 7 7 C 1.46961 * 119.99870 * 348.67481 * 6 5 3 8 8 C 1.40029 * 120.10084 * 316.39710 * 7 6 5 9 9 C 1.37601 * 119.89284 * 179.69609 * 8 7 6 10 10 C 1.39172 * 120.10250 * 0.60359 * 9 8 7 11 11 O 1.35572 * 119.90057 * 179.69268 * 10 9 8 12 12 C 1.34778 * 117.00230 * 174.34060 * 11 10 9 13 13 H 1.07994 * 120.00297 * 5.06173 * 12 11 10 14 14 C 1.38720 * 119.99967 * 185.06430 * 12 11 10 15 15 N 1.31512 * 119.99745 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00050 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47137 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46842 * 119.99947 * 16 14 12 19 19 H 1.48493 * 109.47601 * 240.00264 * 16 14 12 20 20 C 1.39175 * 120.20564 * 359.67626 * 10 9 8 21 21 C 1.37605 * 120.10080 * 0.02562 * 20 10 9 22 22 C 1.46501 * 120.00111 * 180.02562 * 2 1 3 23 23 H 1.09005 * 115.55924 * 154.29452 * 22 2 1 24 24 C 1.52999 * 117.49821 * 8.61155 * 22 2 1 25 25 C 1.52992 * 117.50048 * 299.98764 * 22 2 1 26 26 C 1.53000 * 117.49811 * 359.97438 * 25 22 2 27 27 C 1.53002 * 117.49864 * 214.97776 * 25 22 2 28 28 H 1.09000 * 109.47106 * 269.99238 * 1 2 3 29 29 H 1.08997 * 109.47252 * 29.99885 * 1 2 3 30 30 H 1.08997 * 109.47157 * 150.00004 * 1 2 3 31 31 H 1.08004 * 119.99856 * 353.21759 * 5 3 2 32 32 H 1.08001 * 119.99735 * 168.68061 * 6 5 3 33 33 H 1.07993 * 120.04784 * 359.97438 * 8 7 6 34 34 H 1.07992 * 119.94622 * 180.27460 * 9 8 7 35 35 H 0.97003 * 119.99303 * 180.02562 * 15 14 12 36 36 H 1.07999 * 119.95183 * 180.02562 * 20 10 9 37 37 H 1.07999 * 120.05165 * 179.97438 * 21 20 10 38 38 H 1.08994 * 117.50187 * 0.02562 * 24 22 2 39 39 H 1.09001 * 117.49648 * 145.01827 * 24 22 2 40 40 H 1.09010 * 109.46750 * 180.02562 * 26 25 22 41 41 H 1.08997 * 109.47211 * 300.00827 * 26 25 22 42 42 H 1.08998 * 109.47142 * 60.01724 * 26 25 22 43 43 H 1.09001 * 109.47471 * 299.98857 * 27 25 22 44 44 H 1.09002 * 109.47132 * 59.98998 * 27 25 22 45 45 H 1.08999 * 109.47134 * 179.97438 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3561 1.1673 0.0005 5 6 1.4076 2.4339 0.0006 6 6 2.0756 3.5991 0.1385 7 6 3.4908 3.5922 0.5348 8 6 3.9286 2.7462 1.5611 9 6 5.2557 2.7388 1.9245 10 6 6.1600 3.5793 1.2822 11 8 7.4655 3.5731 1.6477 12 6 8.3107 4.3214 0.9113 13 1 7.9266 4.9539 0.1248 14 6 9.6741 4.2790 1.1637 15 7 10.1419 3.5083 2.1211 16 14 10.8456 5.3155 0.1426 17 1 10.0741 6.0886 -0.8635 18 1 11.5791 6.2531 1.0305 19 1 11.8150 4.4294 -0.5504 20 6 5.7284 4.4261 0.2654 21 6 4.4043 4.4360 -0.1088 22 6 2.1975 -1.2687 -0.0006 23 1 3.2000 -1.2328 -0.4271 24 6 1.3887 -2.5513 -0.2044 25 6 1.9633 -2.2202 1.1744 26 6 0.9825 -1.7736 2.2604 27 6 3.1542 -3.0485 1.6609 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 0.3331 2.4371 -0.1095 32 1 1.5699 4.5361 -0.0424 33 1 3.2265 2.0975 2.0636 34 1 5.5951 2.0835 2.7129 35 1 11.0953 3.4790 2.2978 36 1 6.4338 5.0763 -0.2305 37 1 4.0701 5.0937 -0.8976 38 1 0.3116 -2.4513 -0.3384 39 1 1.8591 -3.3592 -0.7649 40 1 0.9156 -2.5441 3.0286 41 1 1.3345 -0.8442 2.7080 42 1 -0.0011 -1.6145 1.8185 43 1 3.5151 -3.6785 0.8479 44 1 3.9527 -2.3811 1.9852 45 1 2.8435 -3.6757 2.4964 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492992514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:47 Heat of formation + Delta-G solvation = 26.616672 kcal Electronic energy + Delta-G solvation = -25980.621886 eV Core-core repulsion = 22352.167830 eV Total energy + Delta-G solvation = -3628.454056 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.25457 -38.96739 -38.08416 -36.33305 -34.32290 -33.00445 -32.08593 -30.09876 -29.37965 -28.13230 -27.67060 -26.82456 -25.44744 -23.84882 -21.87983 -21.54417 -20.44853 -19.14110 -18.43703 -17.86922 -17.36756 -16.80328 -16.04398 -15.48577 -14.72571 -14.57715 -14.43721 -14.23095 -13.90905 -13.68624 -13.59101 -13.41761 -13.20651 -12.94827 -12.88784 -12.65339 -12.50055 -12.29963 -12.17613 -12.08410 -11.74230 -11.67664 -11.36687 -11.18078 -10.98755 -10.68434 -10.62906 -10.57385 -10.38475 -9.99282 -9.46162 -9.36554 -9.13758 -8.68203 -8.34925 -7.86959 -6.84019 -6.44100 -3.99694 1.25000 2.44278 2.71494 2.99133 3.14709 3.16141 3.21258 3.43856 3.80020 3.98675 4.51394 4.60620 4.67140 4.71744 4.82465 4.94149 5.02548 5.11003 5.15400 5.29931 5.37620 5.40984 5.48431 5.54300 5.59706 5.63902 5.75630 5.76530 5.78103 5.83268 5.87618 5.88524 6.05985 6.18420 6.26009 6.31864 6.43661 6.58515 6.69014 6.82219 7.06089 7.14888 7.38552 7.46404 7.52712 7.55931 7.94693 8.02914 8.52487 9.01751 9.74062 10.73879 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017274 B = 0.003139 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.549633 B = 8918.091570 C = 9942.704540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.592 5.592 3 C 0.544 3.456 4 O -0.506 6.506 5 C -0.269 4.269 6 C 0.029 3.971 7 C -0.190 4.190 8 C 0.014 3.986 9 C -0.202 4.202 10 C 0.172 3.828 11 O -0.173 6.173 12 C -0.389 4.389 13 H 0.094 0.906 14 C 0.038 3.962 15 N -0.860 5.860 16 Si 0.942 3.058 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.251 4.251 21 C -0.041 4.041 22 C 0.096 3.904 23 H 0.132 0.868 24 C -0.185 4.185 25 C -0.140 4.140 26 C -0.112 4.112 27 C -0.115 4.115 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.270 0.730 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.962 -7.938 -3.660 22.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.325 5.325 3 C 0.336 3.664 4 O -0.381 6.381 5 C -0.290 4.290 6 C 0.009 3.991 7 C -0.191 4.191 8 C -0.005 4.005 9 C -0.221 4.221 10 C 0.117 3.883 11 O -0.076 6.076 12 C -0.465 4.465 13 H 0.112 0.888 14 C -0.166 4.166 15 N -0.494 5.494 16 Si 0.766 3.234 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.270 4.270 21 C -0.060 4.060 22 C -0.009 4.009 23 H 0.149 0.851 24 C -0.223 4.223 25 C -0.142 4.142 26 C -0.169 4.169 27 C -0.172 4.172 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.118 0.882 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.143 0.857 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.925 -8.084 -3.380 21.767 hybrid contribution 0.314 0.356 -0.666 0.818 sum -19.611 -7.728 -4.046 21.464 Atomic orbital electron populations 1.21965 0.80372 1.02992 1.01757 1.47214 1.06016 1.04752 1.74555 1.18478 0.87644 0.83660 0.76644 1.90990 1.13008 1.86436 1.47701 1.22682 0.99361 0.92313 1.14634 1.22357 0.93330 0.96484 0.86900 1.18298 0.92440 1.04868 1.03526 1.20430 0.93993 0.92367 0.93698 1.20000 0.92428 1.04027 1.05689 1.19522 0.85504 0.91938 0.91341 1.83905 1.12664 1.60895 1.50099 1.21445 0.86997 1.22459 1.15645 0.88843 1.25328 0.96541 0.97540 0.97191 1.70039 1.14391 1.36176 1.28827 0.85631 0.79693 0.78962 0.79064 1.19034 1.20129 1.20111 1.20951 0.96308 1.05965 1.03776 1.20739 0.92727 0.95668 0.96831 1.21750 0.97302 0.80163 1.01666 0.85082 1.23679 1.00180 0.98783 0.99636 1.22045 0.99403 1.02470 0.90253 1.21380 0.97320 1.01199 0.97034 1.21346 0.96135 0.98784 1.00942 0.92528 0.90717 0.91218 0.85923 0.86057 0.88159 0.86875 0.92030 0.85659 0.87628 0.88370 0.88133 0.92426 0.92167 0.92379 0.92430 0.91641 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 8.53 59.84 0.51 1.09 16 2 N -0.59 -7.22 2.88 -175.64 -0.51 -7.73 16 3 C 0.54 8.42 6.64 -13.04 -0.09 8.33 16 4 O -0.51 -10.16 11.88 5.17 0.06 -10.09 16 5 C -0.27 -3.51 9.14 -37.51 -0.34 -3.85 16 6 C 0.03 0.41 9.80 -37.19 -0.36 0.05 16 7 C -0.19 -3.58 4.54 -105.02 -0.48 -4.06 16 8 C 0.01 0.28 6.59 -39.14 -0.26 0.02 16 9 C -0.20 -4.73 9.97 -39.47 -0.39 -5.12 16 10 C 0.17 4.43 6.66 -38.89 -0.26 4.17 16 11 O -0.17 -5.15 9.74 0.74 0.01 -5.14 16 12 C -0.39 -11.21 9.48 30.91 0.29 -10.91 16 13 H 0.09 2.50 5.18 -52.49 -0.27 2.23 16 14 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 15 N -0.86 -25.68 13.67 55.48 0.76 -24.93 16 16 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 C -0.25 -5.80 9.14 -39.46 -0.36 -6.16 16 21 C -0.04 -0.81 9.78 -39.14 -0.38 -1.20 16 22 C 0.10 1.17 5.92 -67.93 -0.40 0.76 16 23 H 0.13 1.89 7.67 -51.93 -0.40 1.50 16 24 C -0.19 -1.65 9.10 -26.73 -0.24 -1.89 16 25 C -0.14 -1.44 2.70 -154.51 -0.42 -1.86 16 26 C -0.11 -1.05 8.59 37.16 0.32 -0.73 16 27 C -0.11 -1.16 9.85 37.16 0.37 -0.80 16 28 H 0.06 0.41 6.40 -51.93 -0.33 0.08 16 29 H 0.07 0.52 6.02 -51.93 -0.31 0.20 16 30 H 0.07 0.46 5.80 -51.93 -0.30 0.16 16 31 H 0.12 1.15 6.15 -52.48 -0.32 0.83 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.10 1.90 7.02 -52.49 -0.37 1.53 16 34 H 0.11 2.59 8.06 -52.49 -0.42 2.17 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.13 2.87 5.62 -52.49 -0.29 2.58 16 37 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.10 0.73 5.93 -51.93 -0.31 0.43 16 39 H 0.10 0.81 8.05 -51.93 -0.42 0.39 16 40 H 0.06 0.48 7.92 -51.92 -0.41 0.07 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.46 5.64 -51.93 -0.29 0.16 16 43 H 0.06 0.53 7.90 -51.93 -0.41 0.12 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -33.81 362.98 -7.93 -41.74 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.10 Total: 5.95 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -2.59 Total: -21.17 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.25 Total: -32.65 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.07 Total: -15.24 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.81 -7.93 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492992514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.356 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds