Wall clock time and date at job start Tue Mar 31 2020 12:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 119.99893 * 2 1 4 4 O 1.21723 * 119.99858 * 179.97438 * 3 2 1 5 5 C 1.46254 * 119.99974 * 0.02562 * 3 2 1 6 6 C 1.35019 * 119.99982 * 173.22690 * 5 3 2 7 7 C 1.46961 * 119.99870 * 348.67481 * 6 5 3 8 8 C 1.40029 * 120.10084 * 316.39710 * 7 6 5 9 9 C 1.37601 * 119.89284 * 179.69609 * 8 7 6 10 10 C 1.39172 * 120.10250 * 0.60359 * 9 8 7 11 11 O 1.35572 * 119.90057 * 179.69268 * 10 9 8 12 12 C 1.34778 * 117.00230 * 174.34060 * 11 10 9 13 13 H 1.07994 * 120.00297 * 5.06173 * 12 11 10 14 14 C 1.38720 * 119.99967 * 185.06430 * 12 11 10 15 15 N 1.31512 * 119.99745 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00050 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47137 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46842 * 119.99947 * 16 14 12 19 19 H 1.48493 * 109.47601 * 240.00264 * 16 14 12 20 20 C 1.39175 * 120.20564 * 359.67626 * 10 9 8 21 21 C 1.37605 * 120.10080 * 0.02562 * 20 10 9 22 22 C 1.46501 * 120.00111 * 180.02562 * 2 1 3 23 23 H 1.09005 * 115.55924 * 154.29452 * 22 2 1 24 24 C 1.52999 * 117.49821 * 8.61155 * 22 2 1 25 25 C 1.52992 * 117.50048 * 299.98764 * 22 2 1 26 26 C 1.53000 * 117.49811 * 359.97438 * 25 22 2 27 27 C 1.53002 * 117.49864 * 214.97776 * 25 22 2 28 28 H 1.09000 * 109.47106 * 269.99238 * 1 2 3 29 29 H 1.08997 * 109.47252 * 29.99885 * 1 2 3 30 30 H 1.08997 * 109.47157 * 150.00004 * 1 2 3 31 31 H 1.08004 * 119.99856 * 353.21759 * 5 3 2 32 32 H 1.08001 * 119.99735 * 168.68061 * 6 5 3 33 33 H 1.07993 * 120.04784 * 359.97438 * 8 7 6 34 34 H 1.07992 * 119.94622 * 180.27460 * 9 8 7 35 35 H 0.97003 * 119.99303 * 180.02562 * 15 14 12 36 36 H 1.07999 * 119.95183 * 180.02562 * 20 10 9 37 37 H 1.07999 * 120.05165 * 179.97438 * 21 20 10 38 38 H 1.08994 * 117.50187 * 0.02562 * 24 22 2 39 39 H 1.09001 * 117.49648 * 145.01827 * 24 22 2 40 40 H 1.09010 * 109.46750 * 180.02562 * 26 25 22 41 41 H 1.08997 * 109.47211 * 300.00827 * 26 25 22 42 42 H 1.08998 * 109.47142 * 60.01724 * 26 25 22 43 43 H 1.09001 * 109.47471 * 299.98857 * 27 25 22 44 44 H 1.09002 * 109.47132 * 59.98998 * 27 25 22 45 45 H 1.08999 * 109.47134 * 179.97438 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3561 1.1673 0.0005 5 6 1.4076 2.4339 0.0006 6 6 2.0756 3.5991 0.1385 7 6 3.4908 3.5922 0.5348 8 6 3.9286 2.7462 1.5611 9 6 5.2557 2.7388 1.9245 10 6 6.1600 3.5793 1.2822 11 8 7.4655 3.5731 1.6477 12 6 8.3107 4.3214 0.9113 13 1 7.9266 4.9539 0.1248 14 6 9.6741 4.2790 1.1637 15 7 10.1419 3.5083 2.1211 16 14 10.8456 5.3155 0.1426 17 1 10.0741 6.0886 -0.8635 18 1 11.5791 6.2531 1.0305 19 1 11.8150 4.4294 -0.5504 20 6 5.7284 4.4261 0.2654 21 6 4.4043 4.4360 -0.1088 22 6 2.1975 -1.2687 -0.0006 23 1 3.2000 -1.2328 -0.4271 24 6 1.3887 -2.5513 -0.2044 25 6 1.9633 -2.2202 1.1744 26 6 0.9825 -1.7736 2.2604 27 6 3.1542 -3.0485 1.6609 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 0.3331 2.4371 -0.1095 32 1 1.5699 4.5361 -0.0424 33 1 3.2265 2.0975 2.0636 34 1 5.5951 2.0835 2.7129 35 1 11.0953 3.4790 2.2978 36 1 6.4338 5.0763 -0.2305 37 1 4.0701 5.0937 -0.8976 38 1 0.3116 -2.4513 -0.3384 39 1 1.8591 -3.3592 -0.7649 40 1 0.9156 -2.5441 3.0286 41 1 1.3345 -0.8442 2.7080 42 1 -0.0011 -1.6145 1.8185 43 1 3.5151 -3.6785 0.8479 44 1 3.9527 -2.3811 1.9852 45 1 2.8435 -3.6757 2.4964 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492992514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:46 Heat of formation + Delta-G solvation = 5.826580 kcal Electronic energy + Delta-G solvation = -25981.523412 eV Core-core repulsion = 22352.167830 eV Total energy + Delta-G solvation = -3629.355582 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.37320 -40.64210 -39.32863 -37.99864 -35.35009 -34.60381 -33.87183 -31.84042 -30.29724 -29.51292 -28.62753 -27.58423 -27.44418 -25.11277 -23.58463 -22.96575 -21.60672 -20.17095 -19.85956 -19.44784 -18.76264 -18.38461 -17.17082 -16.50234 -16.39179 -16.24242 -15.77071 -15.62583 -15.40759 -15.06992 -14.80316 -14.60568 -14.56348 -14.25670 -14.05347 -13.83091 -13.66544 -13.56053 -13.45863 -13.19439 -12.99460 -12.92665 -12.65120 -12.46448 -12.35530 -12.19922 -12.09587 -11.94715 -11.54295 -11.24946 -10.95897 -10.85625 -10.61751 -10.38083 -9.70017 -9.19024 -8.56695 -8.49483 -6.16991 -0.02984 0.69871 1.10470 1.32683 1.43931 1.52316 2.05496 2.16198 2.37147 2.84517 2.87142 3.19149 3.50976 3.65039 3.79099 3.85397 3.94721 3.98729 4.11305 4.14713 4.15818 4.29795 4.50274 4.53119 4.63581 4.68842 4.74291 4.75470 4.79346 4.92072 4.96175 4.99487 5.03101 5.03896 5.05844 5.09064 5.22890 5.24809 5.26454 5.38705 5.41784 5.64647 5.70156 5.72278 5.84781 6.01393 6.23582 6.53359 6.94248 7.38234 7.76418 8.73937 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017274 B = 0.003139 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.549633 B = 8918.091570 C = 9942.704540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.583 5.583 3 C 0.525 3.475 4 O -0.568 6.568 5 C -0.234 4.234 6 C 0.007 3.993 7 C -0.161 4.161 8 C 0.017 3.983 9 C -0.222 4.222 10 C 0.128 3.872 11 O -0.232 6.232 12 C -0.416 4.416 13 H 0.103 0.897 14 C -0.025 4.025 15 N -0.921 5.921 16 Si 1.023 2.977 17 H -0.250 1.250 18 H -0.265 1.265 19 H -0.268 1.268 20 C -0.258 4.258 21 C -0.047 4.047 22 C 0.060 3.940 23 H 0.093 0.907 24 C -0.150 4.150 25 C -0.144 4.144 26 C -0.109 4.109 27 C -0.117 4.117 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.176 0.824 32 H 0.172 0.828 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.273 0.727 36 H 0.121 0.879 37 H 0.150 0.850 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.038 0.962 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.292 -7.707 -5.872 28.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.313 5.313 3 C 0.318 3.682 4 O -0.449 6.449 5 C -0.254 4.254 6 C -0.012 4.012 7 C -0.162 4.162 8 C -0.001 4.001 9 C -0.242 4.242 10 C 0.077 3.923 11 O -0.138 6.138 12 C -0.492 4.492 13 H 0.120 0.880 14 C -0.222 4.222 15 N -0.559 5.559 16 Si 0.842 3.158 17 H -0.173 1.173 18 H -0.189 1.189 19 H -0.193 1.193 20 C -0.278 4.278 21 C -0.065 4.065 22 C -0.045 4.045 23 H 0.111 0.889 24 C -0.187 4.187 25 C -0.146 4.146 26 C -0.166 4.166 27 C -0.174 4.174 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.193 0.807 32 H 0.189 0.811 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.138 0.862 37 H 0.167 0.833 38 H 0.143 0.857 39 H 0.128 0.872 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.380 -7.886 -5.603 27.161 hybrid contribution 1.426 0.020 -0.038 1.426 sum -23.955 -7.866 -5.641 25.836 Atomic orbital electron populations 1.22339 0.77208 1.05188 1.03363 1.47262 1.07877 1.03796 1.72382 1.19166 0.87288 0.85537 0.76246 1.90987 1.15736 1.87451 1.50716 1.23149 1.01515 0.90247 1.10460 1.22621 0.90474 0.99279 0.88809 1.18882 0.95255 1.01397 1.00640 1.20608 0.92666 0.92636 0.94225 1.20157 0.93951 1.04182 1.05885 1.19982 0.84863 0.93981 0.93453 1.83874 1.14365 1.63302 1.52256 1.21941 0.87807 1.23073 1.16340 0.87977 1.26698 0.98066 0.98942 0.98491 1.70191 1.14951 1.39166 1.31608 0.84480 0.76803 0.77130 0.77433 1.17328 1.18948 1.19336 1.21092 0.98094 1.05449 1.03133 1.21190 0.91179 0.96483 0.97599 1.21681 0.96986 0.81658 1.04152 0.88931 1.23762 1.01149 0.96221 0.97585 1.22141 0.99724 1.01627 0.91109 1.21385 0.97846 1.00454 0.96938 1.21366 0.95653 0.98593 1.01821 0.91065 0.88623 0.89128 0.80692 0.81068 0.86818 0.88386 0.91755 0.86155 0.83271 0.85706 0.87208 0.91368 0.94304 0.90106 0.91782 0.94574 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 8.53 127.77 1.09 1.72 16 2 N -0.58 -12.57 2.88 -827.81 -2.39 -14.95 16 3 C 0.52 15.08 6.64 86.33 0.57 15.65 16 4 O -0.57 -23.11 11.88 -4.42 -0.05 -23.16 16 5 C -0.23 -4.85 9.14 23.61 0.22 -4.64 16 6 C 0.01 0.17 9.80 23.82 0.23 0.41 16 7 C -0.16 -5.77 4.54 -20.13 -0.09 -5.86 16 8 C 0.02 0.71 6.59 22.55 0.15 0.86 16 9 C -0.22 -11.26 9.97 22.34 0.22 -11.04 16 10 C 0.13 7.15 6.66 22.72 0.15 7.30 16 11 O -0.23 -15.14 9.74 -20.25 -0.20 -15.34 16 12 C -0.42 -25.76 9.48 67.94 0.64 -25.12 16 13 H 0.10 5.82 5.18 -2.91 -0.02 5.81 16 14 C -0.02 -1.47 5.49 84.86 0.47 -1.01 16 15 N -0.92 -59.15 13.67 21.62 0.30 -58.85 16 16 Si 1.02 44.80 29.55 68.60 2.03 46.82 16 17 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 18 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 20 C -0.26 -12.46 9.14 22.35 0.20 -12.25 16 21 C -0.05 -1.78 9.78 22.55 0.22 -1.56 16 22 C 0.06 1.41 5.92 44.99 0.27 1.68 16 23 H 0.09 2.87 7.67 -2.38 -0.02 2.85 16 24 C -0.15 -2.19 9.10 30.59 0.28 -1.91 16 25 C -0.14 -2.76 2.70 -52.18 -0.14 -2.90 16 26 C -0.11 -1.76 8.59 71.98 0.62 -1.14 16 27 C -0.12 -2.39 9.85 71.98 0.71 -1.68 16 28 H 0.07 0.61 6.40 -2.39 -0.02 0.60 16 29 H 0.10 0.65 6.02 -2.39 -0.01 0.63 16 30 H 0.09 0.63 5.80 -2.39 -0.01 0.62 16 31 H 0.18 1.87 6.15 -2.91 -0.02 1.86 16 32 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.11 4.33 7.02 -2.91 -0.02 4.31 16 34 H 0.10 5.05 8.06 -2.91 -0.02 5.02 16 35 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 36 H 0.12 5.78 5.62 -2.91 -0.02 5.77 16 37 H 0.15 4.37 8.06 -2.91 -0.02 4.34 16 38 H 0.13 1.18 5.93 -2.39 -0.01 1.17 16 39 H 0.11 1.44 8.05 -2.39 -0.02 1.42 16 40 H 0.07 0.96 7.92 -2.38 -0.02 0.94 16 41 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 0.90 5.64 -2.39 -0.01 0.89 16 43 H 0.06 1.19 7.90 -2.39 -0.02 1.17 16 44 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 1.28 7.92 -2.39 -0.02 1.26 16 Total: -1.00 -85.72 362.98 6.50 -79.22 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 1.01 Total: 27.76 kcal Atomic # 6 Polarization: -47.31 SS G_CDS: 5.81 Total: -41.50 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -2.09 Total: -73.81 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -0.25 Total: -38.50 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -85.72 6.50 -79.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492992514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.042 kcal (2) G-P(sol) polarization free energy of solvation -85.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds