Wall clock time and date at job start Tue Mar 31 2020 10:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00270 * 2 1 4 4 H 1.48506 * 109.46715 * 269.99521 * 3 2 1 5 5 H 1.48497 * 109.47474 * 29.99073 * 3 2 1 6 6 H 1.48499 * 109.47575 * 149.99529 * 3 2 1 7 7 C 1.37878 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99731 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00128 * 180.02562 * 7 2 1 10 10 H 1.09003 * 110.67350 * 61.78607 * 9 7 2 11 11 C 1.54895 * 110.75469 * 298.55245 * 9 7 2 12 12 C 1.54264 * 104.19342 * 203.74121 * 11 9 7 13 13 C 1.53874 * 106.60161 * 23.60970 * 12 11 9 14 14 H 1.08995 * 110.03629 * 240.66436 * 13 12 11 15 15 N 1.46502 * 110.03515 * 119.27891 * 13 12 11 16 16 C 1.34784 * 119.99673 * 86.45604 * 15 13 12 17 17 O 1.21617 * 119.99735 * 0.02562 * 16 15 13 18 18 C 1.47094 * 120.00175 * 180.02562 * 16 15 13 19 19 C 1.32994 * 120.00360 * 179.97438 * 18 16 15 20 20 C 1.50694 * 120.00173 * 179.72535 * 19 18 16 21 21 O 1.42904 * 109.47042 * 135.00075 * 20 19 18 22 22 C 1.35898 * 116.99730 * 179.97438 * 21 20 19 23 23 C 1.38729 * 120.05994 * 359.72616 * 22 21 20 24 24 C 1.38144 * 119.94712 * 179.74501 * 23 22 21 25 25 C 1.38271 * 120.05466 * 0.50829 * 24 23 22 26 26 C 1.38268 * 120.10956 * 359.76408 * 25 24 23 27 27 C 1.38148 * 120.05843 * 359.97438 * 26 25 24 28 28 C 1.54274 * 106.59619 * 0.02562 * 13 12 11 29 29 H 0.97002 * 119.99490 * 0.02562 * 1 2 3 30 30 H 1.08995 * 110.48674 * 85.06343 * 11 9 7 31 31 H 1.08995 * 110.48789 * 322.41872 * 11 9 7 32 32 H 1.08996 * 110.03707 * 264.32534 * 12 11 9 33 33 H 1.09000 * 110.07338 * 142.91879 * 12 11 9 34 34 H 0.96998 * 120.00787 * 266.46260 * 15 13 12 35 35 H 1.08005 * 119.99863 * 359.72513 * 18 16 15 36 36 H 1.08000 * 119.99263 * 359.72526 * 19 18 16 37 37 H 1.09005 * 109.47319 * 255.00015 * 20 19 18 38 38 H 1.08997 * 109.47301 * 15.00057 * 20 19 18 39 39 H 1.08007 * 120.02626 * 359.97438 * 23 22 21 40 40 H 1.08000 * 119.97726 * 180.27284 * 24 23 22 41 41 H 1.08000 * 119.94741 * 179.74870 * 25 24 23 42 42 H 1.07996 * 119.97294 * 179.97438 * 26 25 24 43 43 H 1.07989 * 120.02963 * 179.97438 * 27 26 25 44 44 H 1.08998 * 110.48802 * 95.06552 * 28 13 12 45 45 H 1.08999 * 110.48403 * 217.71113 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8960 -0.7118 0.8998 11 6 4.0609 -0.5022 -1.2711 12 6 5.4751 -1.0940 -1.4428 13 6 5.4748 -2.4511 -0.7174 14 1 6.2146 -2.4468 0.0831 15 7 5.7692 -3.5275 -1.6665 16 6 7.0480 -3.8570 -1.9364 17 8 7.9574 -3.2609 -1.3917 18 6 7.3437 -4.9374 -2.8897 19 6 8.6055 -5.2622 -3.1565 20 6 8.9083 -6.3732 -4.1285 21 8 9.9478 -5.9585 -5.0170 22 6 10.3436 -6.8509 -5.9625 23 6 9.7479 -8.1019 -6.0300 24 6 10.1483 -9.0052 -6.9954 25 6 11.1494 -8.6673 -7.8873 26 6 11.7487 -7.4231 -7.8185 27 6 11.3481 -6.5142 -6.8584 28 6 4.0601 -2.6368 -0.1308 29 1 -0.4849 0.8401 -0.0004 30 1 4.1139 0.5767 -1.1258 31 1 3.4398 -0.7418 -2.1341 32 1 6.2145 -0.4309 -0.9938 33 1 5.6953 -1.2362 -2.5008 34 1 5.0439 -4.0032 -2.1008 35 1 6.5360 -5.4698 -3.3701 36 1 9.4131 -4.7295 -2.6764 37 1 9.2308 -7.2582 -3.5798 38 1 8.0120 -6.6082 -4.7024 39 1 8.9690 -8.3680 -5.3307 40 1 9.6818 -9.9777 -7.0512 41 1 11.4640 -9.3764 -8.6388 42 1 12.5307 -7.1616 -8.5160 43 1 11.8168 -5.5428 -6.8049 44 1 3.4393 -3.2212 -0.8098 45 1 4.1125 -3.1155 0.8471 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492996773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:19 Heat of formation + Delta-G solvation = -39.109332 kcal Electronic energy + Delta-G solvation = -24256.797954 eV Core-core repulsion = 20625.493805 eV Total energy + Delta-G solvation = -3631.304149 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.53120 -39.77447 -37.94230 -37.38109 -34.16412 -33.77391 -32.11307 -31.43206 -30.29594 -28.65265 -28.16553 -26.96628 -23.84405 -23.18023 -22.64153 -21.66121 -20.04643 -19.69531 -19.25530 -18.62077 -17.54410 -16.93145 -16.44762 -16.25998 -16.06122 -15.56661 -15.23766 -14.87043 -14.57572 -14.19893 -14.13086 -13.82977 -13.63650 -13.19655 -13.03518 -12.81233 -12.57905 -12.41395 -12.04513 -11.99820 -11.71865 -11.60284 -11.23443 -11.15859 -10.98404 -10.50590 -10.17837 -10.02385 -9.85151 -9.80210 -9.72773 -9.47792 -9.43016 -9.04704 -8.76499 -8.62515 -8.55323 -6.09517 -4.08800 0.91116 1.01011 1.03879 2.74227 3.28696 3.30908 3.37603 3.38338 3.40252 3.42350 4.29251 4.41064 4.42411 4.51835 4.55065 4.67602 4.75374 4.90552 4.96308 5.01484 5.11049 5.19138 5.22850 5.33348 5.42245 5.55959 5.57723 5.87522 5.92543 5.98304 6.02967 6.09254 6.11658 6.12581 6.28836 6.34963 6.39787 6.46462 6.53807 6.65987 6.81073 6.98393 6.99603 7.05853 7.49291 7.66971 7.74787 8.32296 8.49354 8.93298 9.53623 11.03594 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.031990 B = 0.001797 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.065214 B =15574.268507 C =15663.502236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.071 3.929 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.015 3.985 10 H 0.035 0.965 11 C -0.131 4.131 12 C -0.131 4.131 13 C 0.136 3.864 14 H 0.084 0.916 15 N -0.711 5.711 16 C 0.540 3.460 17 O -0.546 6.546 18 C -0.185 4.185 19 C -0.078 4.078 20 C 0.086 3.914 21 O -0.309 6.309 22 C 0.131 3.869 23 C -0.211 4.211 24 C -0.080 4.080 25 C -0.161 4.161 26 C -0.081 4.081 27 C -0.152 4.152 28 C -0.110 4.110 29 H 0.263 0.737 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.401 0.599 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.068 0.932 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.624 -17.764 -13.936 30.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.712 3.288 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.005 4.005 10 H 0.053 0.947 11 C -0.168 4.168 12 C -0.170 4.170 13 C 0.033 3.967 14 H 0.102 0.898 15 N -0.360 5.360 16 C 0.327 3.673 17 O -0.426 6.426 18 C -0.206 4.206 19 C -0.098 4.098 20 C 0.011 3.989 21 O -0.223 6.223 22 C 0.086 3.914 23 C -0.229 4.229 24 C -0.098 4.098 25 C -0.179 4.179 26 C -0.099 4.099 27 C -0.171 4.171 28 C -0.148 4.148 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.236 0.764 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.147 0.853 43 H 0.149 0.851 44 H 0.087 0.913 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.144 -17.012 -13.479 30.301 hybrid contribution -0.222 0.529 -0.280 0.638 sum 20.922 -16.483 -13.759 29.979 Atomic orbital electron populations 1.69903 1.06299 1.26947 1.50853 1.24990 0.94648 0.99049 0.94373 0.86899 0.79965 0.83638 0.78343 1.20458 1.22256 1.18952 1.20966 0.88542 0.94423 1.50965 0.90831 1.20070 0.96542 0.90630 0.93227 0.94682 1.22826 0.93875 0.98680 1.01465 1.22555 0.98747 0.95984 0.99664 1.21881 0.98589 0.85662 0.90603 0.89785 1.46229 1.07004 1.37486 1.45323 1.18448 0.83297 0.83479 0.82053 1.90789 1.45270 1.54327 1.52187 1.22707 0.97622 0.99061 1.01198 1.23256 0.97906 0.94525 0.94084 1.21820 0.90137 0.96615 0.90324 1.86118 1.53290 1.40467 1.42376 1.19047 0.94316 0.88604 0.89469 1.21303 1.04255 0.94294 1.03073 1.20977 0.96094 0.98873 0.93892 1.21096 0.98605 0.97360 1.00851 1.21001 0.98782 0.93138 0.96968 1.20505 0.98607 1.01492 0.96472 1.22579 0.92135 1.00303 0.99751 0.92680 0.93534 0.91444 0.92203 0.92437 0.76449 0.85281 0.84423 0.90033 0.90712 0.85359 0.85728 0.85892 0.85309 0.85063 0.91305 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 3 Si 0.88 21.67 24.46 -169.99 -4.16 17.51 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.26 -6.25 6.48 56.52 0.37 -5.88 16 7 C -0.51 -13.85 9.12 -34.44 -0.31 -14.16 16 8 H 0.07 2.14 8.03 -52.48 -0.42 1.72 16 9 C 0.01 0.33 2.30 -89.77 -0.21 0.12 16 10 H 0.04 0.82 7.37 -51.93 -0.38 0.43 16 11 C -0.13 -2.73 5.07 -25.07 -0.13 -2.85 16 12 C -0.13 -2.34 6.59 -25.61 -0.17 -2.51 16 13 C 0.14 2.28 3.23 -66.81 -0.22 2.07 16 14 H 0.08 1.48 7.60 -51.93 -0.39 1.08 16 15 N -0.71 -9.83 4.99 -53.90 -0.27 -10.09 16 16 C 0.54 7.68 7.75 -12.66 -0.10 7.58 16 17 O -0.55 -9.87 15.90 5.26 0.08 -9.79 16 18 C -0.18 -1.87 9.63 -37.81 -0.36 -2.23 16 19 C -0.08 -0.76 9.47 -36.13 -0.34 -1.10 16 20 C 0.09 0.65 5.16 36.00 0.19 0.84 16 21 O -0.31 -3.08 10.12 -19.42 -0.20 -3.28 16 22 C 0.13 1.20 6.69 -39.21 -0.26 0.94 16 23 C -0.21 -1.60 9.04 -39.43 -0.36 -1.95 16 24 C -0.08 -0.53 10.04 -39.60 -0.40 -0.93 16 25 C -0.16 -1.04 10.04 -39.56 -0.40 -1.43 16 26 C -0.08 -0.55 10.04 -39.60 -0.40 -0.95 16 27 C -0.15 -1.27 9.99 -39.43 -0.39 -1.66 16 28 C -0.11 -2.01 5.94 -25.06 -0.15 -2.16 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.05 1.00 4.90 -51.93 -0.25 0.75 16 31 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.98 7.92 -51.93 -0.41 0.57 16 34 H 0.40 4.51 8.32 -40.82 -0.34 4.17 16 35 H 0.13 0.90 7.93 -52.48 -0.42 0.49 16 36 H 0.14 1.56 7.49 -52.49 -0.39 1.17 16 37 H 0.08 0.49 7.65 -51.93 -0.40 0.09 16 38 H 0.07 0.45 7.42 -51.93 -0.39 0.07 16 39 H 0.13 0.74 6.30 -52.48 -0.33 0.41 16 40 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.12 0.54 8.06 -52.49 -0.42 0.11 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 43 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.07 1.22 7.63 -51.93 -0.40 0.83 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -32.92 369.09 -8.95 -41.88 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.65 Total: 3.09 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -4.10 Total: -18.49 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.50 Total: -36.48 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.11 Total: -13.07 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.16 Total: 17.51 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.92 -8.95 -41.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492996773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.766 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds