Wall clock time and date at job start Tue Mar 31 2020 10:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00270 * 2 1 4 4 H 1.48506 * 109.46715 * 269.99521 * 3 2 1 5 5 H 1.48497 * 109.47474 * 29.99073 * 3 2 1 6 6 H 1.48499 * 109.47575 * 149.99529 * 3 2 1 7 7 C 1.37878 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99731 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00128 * 180.02562 * 7 2 1 10 10 H 1.09003 * 110.67350 * 61.78607 * 9 7 2 11 11 C 1.54895 * 110.75469 * 298.55245 * 9 7 2 12 12 C 1.54264 * 104.19342 * 203.74121 * 11 9 7 13 13 C 1.53874 * 106.60161 * 23.60970 * 12 11 9 14 14 H 1.08995 * 110.03629 * 240.66436 * 13 12 11 15 15 N 1.46502 * 110.03515 * 119.27891 * 13 12 11 16 16 C 1.34784 * 119.99673 * 86.45604 * 15 13 12 17 17 O 1.21617 * 119.99735 * 0.02562 * 16 15 13 18 18 C 1.47094 * 120.00175 * 180.02562 * 16 15 13 19 19 C 1.32994 * 120.00360 * 179.97438 * 18 16 15 20 20 C 1.50694 * 120.00173 * 179.72535 * 19 18 16 21 21 O 1.42904 * 109.47042 * 135.00075 * 20 19 18 22 22 C 1.35898 * 116.99730 * 179.97438 * 21 20 19 23 23 C 1.38729 * 120.05994 * 359.72616 * 22 21 20 24 24 C 1.38144 * 119.94712 * 179.74501 * 23 22 21 25 25 C 1.38271 * 120.05466 * 0.50829 * 24 23 22 26 26 C 1.38268 * 120.10956 * 359.76408 * 25 24 23 27 27 C 1.38148 * 120.05843 * 359.97438 * 26 25 24 28 28 C 1.54274 * 106.59619 * 0.02562 * 13 12 11 29 29 H 0.97002 * 119.99490 * 0.02562 * 1 2 3 30 30 H 1.08995 * 110.48674 * 85.06343 * 11 9 7 31 31 H 1.08995 * 110.48789 * 322.41872 * 11 9 7 32 32 H 1.08996 * 110.03707 * 264.32534 * 12 11 9 33 33 H 1.09000 * 110.07338 * 142.91879 * 12 11 9 34 34 H 0.96998 * 120.00787 * 266.46260 * 15 13 12 35 35 H 1.08005 * 119.99863 * 359.72513 * 18 16 15 36 36 H 1.08000 * 119.99263 * 359.72526 * 19 18 16 37 37 H 1.09005 * 109.47319 * 255.00015 * 20 19 18 38 38 H 1.08997 * 109.47301 * 15.00057 * 20 19 18 39 39 H 1.08007 * 120.02626 * 359.97438 * 23 22 21 40 40 H 1.08000 * 119.97726 * 180.27284 * 24 23 22 41 41 H 1.08000 * 119.94741 * 179.74870 * 25 24 23 42 42 H 1.07996 * 119.97294 * 179.97438 * 26 25 24 43 43 H 1.07989 * 120.02963 * 179.97438 * 27 26 25 44 44 H 1.08998 * 110.48802 * 95.06552 * 28 13 12 45 45 H 1.08999 * 110.48403 * 217.71113 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8960 -0.7118 0.8998 11 6 4.0609 -0.5022 -1.2711 12 6 5.4751 -1.0940 -1.4428 13 6 5.4748 -2.4511 -0.7174 14 1 6.2146 -2.4468 0.0831 15 7 5.7692 -3.5275 -1.6665 16 6 7.0480 -3.8570 -1.9364 17 8 7.9574 -3.2609 -1.3917 18 6 7.3437 -4.9374 -2.8897 19 6 8.6055 -5.2622 -3.1565 20 6 8.9083 -6.3732 -4.1285 21 8 9.9478 -5.9585 -5.0170 22 6 10.3436 -6.8509 -5.9625 23 6 9.7479 -8.1019 -6.0300 24 6 10.1483 -9.0052 -6.9954 25 6 11.1494 -8.6673 -7.8873 26 6 11.7487 -7.4231 -7.8185 27 6 11.3481 -6.5142 -6.8584 28 6 4.0601 -2.6368 -0.1308 29 1 -0.4849 0.8401 -0.0004 30 1 4.1139 0.5767 -1.1258 31 1 3.4398 -0.7418 -2.1341 32 1 6.2145 -0.4309 -0.9938 33 1 5.6953 -1.2362 -2.5008 34 1 5.0439 -4.0032 -2.1008 35 1 6.5360 -5.4698 -3.3701 36 1 9.4131 -4.7295 -2.6764 37 1 9.2308 -7.2582 -3.5798 38 1 8.0120 -6.6082 -4.7024 39 1 8.9690 -8.3680 -5.3307 40 1 9.6818 -9.9777 -7.0512 41 1 11.4640 -9.3764 -8.6388 42 1 12.5307 -7.1616 -8.5160 43 1 11.8168 -5.5428 -6.8049 44 1 3.4393 -3.2212 -0.8098 45 1 4.1125 -3.1155 0.8471 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492996773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:18 Heat of formation + Delta-G solvation = -59.449449 kcal Electronic energy + Delta-G solvation = -24257.679968 eV Core-core repulsion = 20625.493805 eV Total energy + Delta-G solvation = -3632.186163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.15412 -40.91711 -38.94592 -38.41218 -35.33148 -34.95191 -34.00152 -31.93654 -30.88212 -30.28740 -29.48343 -27.94417 -25.56350 -23.93039 -23.29063 -22.50042 -21.41131 -21.10906 -20.44191 -19.28005 -18.82842 -18.47810 -17.23819 -17.00190 -16.88964 -16.67478 -16.63697 -16.07407 -15.58286 -15.35615 -15.21636 -14.82424 -14.53781 -14.30176 -14.20208 -14.10069 -13.82020 -13.62300 -13.34052 -12.86393 -12.73526 -12.64051 -12.46652 -12.31810 -12.16916 -11.84360 -11.74306 -11.64833 -11.53825 -11.26398 -11.05812 -10.99310 -10.69483 -10.62407 -10.00142 -9.93402 -9.17475 -8.28184 -6.30578 0.18479 0.41031 0.49935 1.33113 1.37335 1.46702 1.98585 2.26707 2.34660 2.51064 2.86348 3.07825 3.57804 3.78801 3.87552 3.91125 3.94302 4.02139 4.07662 4.16861 4.24212 4.31924 4.34454 4.51988 4.57071 4.60480 4.64515 4.71160 4.74589 4.88878 4.92712 4.96510 5.09697 5.10417 5.16664 5.24231 5.28524 5.36347 5.40106 5.50086 5.61301 5.62674 5.66302 5.77763 5.87057 6.32813 6.42957 6.60556 6.75931 7.24468 7.35187 8.88232 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.031990 B = 0.001797 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.065214 B =15574.268507 C =15663.502236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.015 3.985 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.298 1.298 6 H -0.249 1.249 7 C -0.509 4.509 8 H 0.040 0.960 9 C 0.005 3.995 10 H 0.030 0.970 11 C -0.127 4.127 12 C -0.123 4.123 13 C 0.148 3.852 14 H 0.078 0.922 15 N -0.703 5.703 16 C 0.537 3.463 17 O -0.591 6.591 18 C -0.186 4.186 19 C -0.069 4.069 20 C 0.086 3.914 21 O -0.333 6.333 22 C 0.108 3.892 23 C -0.217 4.217 24 C -0.087 4.087 25 C -0.165 4.165 26 C -0.086 4.086 27 C -0.174 4.174 28 C -0.100 4.100 29 H 0.264 0.736 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.416 0.584 35 H 0.168 0.832 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.129 0.871 44 H 0.073 0.927 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.192 -19.334 -15.441 33.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.182 4.182 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.225 1.225 6 H -0.173 1.173 7 C -0.547 4.547 8 H 0.059 0.941 9 C -0.014 4.014 10 H 0.048 0.952 11 C -0.165 4.165 12 C -0.162 4.162 13 C 0.043 3.957 14 H 0.096 0.904 15 N -0.353 5.353 16 C 0.326 3.674 17 O -0.473 6.473 18 C -0.207 4.207 19 C -0.089 4.089 20 C 0.012 3.988 21 O -0.247 6.247 22 C 0.063 3.937 23 C -0.235 4.235 24 C -0.105 4.105 25 C -0.183 4.183 26 C -0.104 4.104 27 C -0.192 4.192 28 C -0.138 4.138 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.253 0.747 35 H 0.185 0.815 36 H 0.133 0.867 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.166 0.834 43 H 0.147 0.853 44 H 0.092 0.908 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 22.715 -18.616 -15.002 32.978 hybrid contribution -0.696 0.910 0.177 1.159 sum 22.019 -17.706 -14.825 31.908 Atomic orbital electron populations 1.70040 1.08058 1.27833 1.53062 1.25786 0.95291 1.02680 0.94455 0.85976 0.79189 0.79350 0.78938 1.19363 1.22537 1.17311 1.21278 0.91068 0.93004 1.49381 0.94123 1.20056 0.93584 0.93839 0.93930 0.95173 1.22683 0.95515 0.98266 0.99987 1.22484 0.96671 0.96410 1.00612 1.21537 0.97141 0.86120 0.90952 0.90368 1.46057 1.07692 1.36807 1.44758 1.19070 0.82546 0.83794 0.81948 1.90773 1.46430 1.56077 1.54012 1.22676 0.98847 0.98358 1.00788 1.23300 0.97235 0.94512 0.93857 1.21923 0.90734 0.96007 0.90105 1.86065 1.54157 1.41470 1.43031 1.19280 0.95226 0.89326 0.89838 1.21553 1.04547 0.93766 1.03670 1.21340 0.96025 0.99676 0.93419 1.21455 0.98228 0.97518 1.01130 1.21293 0.99158 0.93119 0.96802 1.20721 0.99162 1.02035 0.97330 1.22430 0.92994 0.97741 1.00622 0.92686 0.94104 0.92197 0.91889 0.91293 0.74709 0.81466 0.86721 0.88156 0.88483 0.83644 0.83486 0.83727 0.83380 0.85347 0.90821 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.51 13.96 21.45 0.30 -58.21 16 2 C 0.01 0.85 5.46 84.65 0.46 1.31 16 3 Si 0.94 44.58 24.46 68.60 1.68 46.26 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.25 -11.09 6.48 99.48 0.64 -10.45 16 7 C -0.51 -27.94 9.12 25.60 0.23 -27.70 16 8 H 0.04 2.43 8.03 -2.91 -0.02 2.41 16 9 C 0.01 0.23 2.30 -10.24 -0.02 0.20 16 10 H 0.03 1.37 7.37 -2.39 -0.02 1.35 16 11 C -0.13 -5.10 5.07 31.67 0.16 -4.94 16 12 C -0.12 -4.16 6.59 31.32 0.21 -3.96 16 13 C 0.15 4.67 3.23 45.72 0.15 4.82 16 14 H 0.08 2.63 7.60 -2.39 -0.02 2.61 16 15 N -0.70 -17.86 4.99 -442.68 -2.21 -20.07 16 16 C 0.54 14.34 7.75 86.57 0.67 15.01 16 17 O -0.59 -20.94 15.90 -4.09 -0.06 -21.00 16 18 C -0.19 -3.29 9.63 23.43 0.23 -3.07 16 19 C -0.07 -1.23 9.47 24.52 0.23 -1.00 16 20 C 0.09 1.12 5.16 71.23 0.37 1.49 16 21 O -0.33 -6.34 10.12 -92.40 -0.94 -7.28 16 22 C 0.11 1.87 6.69 22.51 0.15 2.02 16 23 C -0.22 -2.83 9.04 22.36 0.20 -2.63 16 24 C -0.09 -0.94 10.04 22.26 0.22 -0.72 16 25 C -0.17 -1.75 10.04 22.28 0.22 -1.53 16 26 C -0.09 -1.04 10.04 22.26 0.22 -0.82 16 27 C -0.17 -2.83 9.99 22.37 0.22 -2.60 16 28 C -0.10 -3.53 5.94 31.68 0.19 -3.34 16 29 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 30 H 0.04 1.68 4.90 -2.39 -0.01 1.67 16 31 H 0.06 2.48 8.04 -2.39 -0.02 2.46 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 2.18 7.92 -2.39 -0.02 2.16 16 34 H 0.42 8.16 8.32 -92.71 -0.77 7.39 16 35 H 0.17 1.63 7.93 -2.91 -0.02 1.61 16 36 H 0.11 2.60 7.49 -2.91 -0.02 2.57 16 37 H 0.10 0.93 7.65 -2.38 -0.02 0.91 16 38 H 0.10 0.84 7.42 -2.39 -0.02 0.82 16 39 H 0.15 1.25 6.30 -2.91 -0.02 1.23 16 40 H 0.15 0.85 8.06 -2.91 -0.02 0.82 16 41 H 0.14 0.83 8.06 -2.91 -0.02 0.81 16 42 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16 43 H 0.13 1.99 8.06 -2.92 -0.02 1.97 16 44 H 0.07 2.52 7.63 -2.39 -0.02 2.50 16 45 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -72.92 369.09 3.04 -69.88 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.16 Total: 17.87 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 4.12 Total: -27.45 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -1.91 Total: -78.28 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -1.00 Total: -28.28 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.68 Total: 46.26 kcal Total: -72.92 3.04 -69.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492996773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.428 kcal (2) G-P(sol) polarization free energy of solvation -72.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds