Wall clock time and date at job start Tue Mar 31 2020 11:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38128 * 119.96026 * 2 1 4 4 C 1.38886 * 119.92330 * 179.97438 * 3 2 1 5 5 N 1.39679 * 120.07593 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00084 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46840 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47233 * 299.99500 * 7 6 5 9 9 C 1.52996 * 109.47328 * 59.99969 * 7 6 5 10 10 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 11 11 C 1.50697 * 109.47291 * 179.97438 * 10 7 6 12 12 H 1.08006 * 119.99920 * 359.97438 * 11 10 7 13 13 C 1.37876 * 120.00428 * 179.97438 * 11 10 7 14 14 N 1.31519 * 119.99563 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00432 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46678 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47258 * 119.99423 * 15 13 11 18 18 H 1.48493 * 109.47346 * 240.00028 * 15 13 11 19 19 C 1.38937 * 119.85024 * 0.25900 * 4 3 2 20 20 C 1.38076 * 119.92643 * 359.51001 * 19 4 3 21 21 C 1.38262 * 119.96497 * 180.02562 * 2 1 3 22 22 C 1.50701 * 119.92202 * 0.02647 * 21 2 1 23 23 F 1.39906 * 109.46756 * 179.97438 * 22 21 2 24 24 F 1.39896 * 109.47437 * 299.99525 * 22 21 2 25 25 F 1.39901 * 109.47157 * 60.00149 * 22 21 2 26 26 H 1.09003 * 109.46701 * 90.00211 * 1 2 3 27 27 H 1.08997 * 109.46515 * 209.99826 * 1 2 3 28 28 H 1.08996 * 109.47139 * 329.99775 * 1 2 3 29 29 H 1.07998 * 120.03638 * 359.97438 * 3 2 1 30 30 H 0.97000 * 119.99495 * 359.97438 * 5 4 3 31 31 H 1.09002 * 109.47391 * 59.99811 * 6 5 4 32 32 H 1.09001 * 109.46813 * 299.99868 * 6 5 4 33 33 H 1.09000 * 109.46986 * 60.00203 * 8 7 6 34 34 H 1.08993 * 109.47662 * 180.02562 * 8 7 6 35 35 H 1.09002 * 109.47075 * 300.00932 * 8 7 6 36 36 H 1.08992 * 109.47554 * 59.99639 * 9 7 6 37 37 H 1.09004 * 109.47108 * 179.97438 * 9 7 6 38 38 H 1.09000 * 109.46870 * 299.99783 * 9 7 6 39 39 H 1.09001 * 109.47109 * 299.99380 * 10 7 6 40 40 H 1.09002 * 109.47508 * 59.99571 * 10 7 6 41 41 H 0.97000 * 119.99425 * 180.02562 * 14 13 11 42 42 H 1.08005 * 120.03665 * 179.72112 * 19 4 3 43 43 H 1.07992 * 119.96665 * 180.20818 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1967 0.0000 4 6 3.5857 1.1958 0.0005 5 7 4.2865 2.4041 0.0000 6 6 5.7515 2.4012 0.0000 7 6 6.2643 3.8427 0.0000 8 6 5.7557 4.5650 -1.2493 9 6 5.7557 4.5650 1.2492 10 6 7.7943 3.8398 -0.0006 11 6 8.2994 5.2595 -0.0013 12 1 7.5991 6.0819 -0.0016 13 6 9.6554 5.5089 -0.0014 14 7 10.5081 4.5076 -0.0004 15 14 10.2816 7.2688 -0.0014 16 1 9.1283 8.2044 -0.0020 17 1 11.1070 7.5006 1.2110 18 1 11.1069 7.5006 -1.2139 19 6 4.2765 -0.0097 -0.0044 20 6 3.5807 -1.2023 0.0005 21 6 2.1977 -1.1978 -0.0005 22 6 1.4416 -2.5014 -0.0017 23 9 2.3487 -3.5666 -0.0027 24 9 0.6367 -2.5748 1.1402 25 9 0.6376 -2.5732 -1.1444 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6568 2.1320 -0.0004 30 1 3.8031 3.2450 -0.0011 31 1 6.1139 1.8863 -0.8897 32 1 6.1138 1.8871 0.8903 33 1 4.6657 4.5671 -1.2494 34 1 6.1213 5.5917 -1.2496 35 1 6.1180 4.0503 -2.1393 36 1 6.1179 4.0505 2.1392 37 1 6.1214 5.5919 1.2494 38 1 4.6657 4.5671 1.2491 39 1 8.1570 3.3252 0.8892 40 1 8.1563 3.3253 -0.8908 41 1 11.4621 4.6830 -0.0001 42 1 5.3565 -0.0139 -0.0085 43 1 4.1170 -2.1397 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000536147428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:06 Heat of formation + Delta-G solvation = -150.245483 kcal Electronic energy + Delta-G solvation = -26184.026312 eV Core-core repulsion = 22006.046197 eV Total energy + Delta-G solvation = -4177.980115 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.151 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.21044 -47.72749 -47.63125 -39.84258 -37.75840 -34.86411 -32.64812 -32.33923 -30.27473 -27.76888 -27.14799 -26.59694 -25.93766 -24.85967 -22.93814 -22.40404 -20.72675 -18.68581 -18.50272 -18.32432 -18.00040 -16.91221 -16.41963 -15.66949 -14.81527 -14.77026 -14.58740 -14.53028 -14.51956 -14.23059 -14.09146 -13.82959 -13.79101 -13.67257 -13.55322 -13.25259 -12.91004 -12.88267 -12.80808 -12.30920 -12.13587 -12.07453 -11.41197 -11.30910 -11.17083 -11.09968 -10.89628 -10.73785 -10.47621 -10.31098 -10.22421 -9.85662 -9.30331 -9.00961 -8.90682 -8.43560 -7.52606 -6.07748 -4.08998 1.17433 1.28024 2.71103 3.25172 3.33641 3.35578 3.47251 3.54363 3.82547 4.05579 4.39209 4.45094 4.63931 4.71694 5.08579 5.23650 5.28123 5.29701 5.38742 5.40229 5.47502 5.55942 5.65250 5.70367 5.87465 6.00989 6.06033 6.11625 6.16654 6.23844 6.26935 6.31276 6.54038 6.54554 6.64514 6.94076 6.98114 7.01036 7.31947 7.53550 7.65406 7.73703 7.90641 8.32546 8.95765 9.54806 11.03752 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.032842 B = 0.002409 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.358136 B =11622.611151 C =12108.641991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.015 3.985 3 C -0.210 4.210 4 C 0.260 3.740 5 N -0.727 5.727 6 C 0.126 3.874 7 C -0.071 4.071 8 C -0.127 4.127 9 C -0.127 4.127 10 C 0.036 3.964 11 C -0.512 4.512 12 H 0.060 0.940 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.889 3.111 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.208 4.208 20 C -0.018 4.018 21 C -0.263 4.263 22 C 0.516 3.484 23 F -0.182 7.182 24 F -0.182 7.182 25 F -0.183 7.183 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.127 0.873 30 H 0.402 0.598 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.029 0.971 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.260 0.740 42 H 0.134 0.866 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.840 -10.456 -0.025 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.014 3.986 3 C -0.233 4.233 4 C 0.150 3.850 5 N -0.351 5.351 6 C 0.003 3.997 7 C -0.071 4.071 8 C -0.184 4.184 9 C -0.184 4.184 10 C -0.001 4.001 11 C -0.550 4.550 12 H 0.078 0.922 13 C -0.145 4.145 14 N -0.534 5.534 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.231 4.231 20 C -0.037 4.037 21 C -0.267 4.267 22 C 0.462 3.538 23 F -0.164 7.164 24 F -0.164 7.164 25 F -0.164 7.164 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.145 0.855 30 H 0.238 0.762 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.070 0.930 42 H 0.151 0.849 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.423 -10.493 -0.023 21.202 hybrid contribution 0.309 1.019 -0.005 1.065 sum -18.114 -9.473 -0.028 20.442 Atomic orbital electron populations 1.21109 0.90882 1.03908 1.03222 1.19221 0.95639 0.91253 0.92532 1.20357 0.91959 0.97649 1.13311 1.18084 0.90989 0.87050 0.88833 1.45257 1.06859 1.04874 1.78147 1.21738 0.77721 0.99336 1.00948 1.20876 1.00145 0.90936 0.95181 1.21755 0.97488 1.01991 0.97183 1.21752 0.97494 1.01987 0.97181 1.19096 0.86032 0.97601 0.97390 1.21206 0.91328 0.92172 1.50302 0.92220 1.25009 0.97191 0.96807 0.95456 1.69967 1.02086 1.30464 1.50871 0.86589 0.78942 0.85198 0.77595 1.19794 1.21077 1.21083 1.20665 1.00414 0.90399 1.11591 1.20664 0.91813 0.98652 0.92606 1.19382 0.94620 0.90939 1.21782 1.18266 0.77206 0.85026 0.73335 1.93136 1.67248 1.59740 1.96260 1.93142 1.74946 1.96664 1.51602 1.93185 1.75022 1.96819 1.51373 0.90209 0.90784 0.90676 0.85475 0.76191 0.92103 0.92104 0.95222 0.91421 0.93374 0.93374 0.91424 0.95215 0.96378 0.96382 0.93041 0.84862 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 8.98 36.01 0.32 -0.88 16 2 C 0.01 0.17 5.84 -104.65 -0.61 -0.45 16 3 C -0.21 -2.38 9.55 -39.38 -0.38 -2.76 16 4 C 0.26 3.27 6.65 -83.78 -0.56 2.71 16 5 N -0.73 -9.35 5.14 -58.63 -0.30 -9.65 16 6 C 0.13 1.90 3.80 -4.04 -0.02 1.89 16 7 C -0.07 -1.25 0.54 -154.51 -0.08 -1.33 16 8 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 9 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 10 C 0.04 0.84 4.04 -27.88 -0.11 0.73 16 11 C -0.51 -13.15 7.65 -34.44 -0.26 -13.42 16 12 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 13 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 14 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 15 Si 0.89 20.75 29.54 -169.99 -5.02 15.72 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C -0.21 -2.60 9.31 -39.38 -0.37 -2.97 16 20 C -0.02 -0.21 9.42 -39.61 -0.37 -0.59 16 21 C -0.26 -3.12 5.37 -104.59 -0.56 -3.69 16 22 C 0.52 5.91 2.81 36.01 0.10 6.01 16 23 F -0.18 -2.11 15.97 2.25 0.04 -2.07 16 24 F -0.18 -2.09 15.33 2.25 0.03 -2.05 16 25 F -0.18 -2.10 16.42 2.25 0.04 -2.06 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.68 5.51 -51.93 -0.29 0.39 16 28 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 29 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.40 4.78 6.18 -40.82 -0.25 4.53 16 31 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 32 H 0.06 0.94 7.96 -51.93 -0.41 0.53 16 33 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 34 H 0.07 1.24 6.61 -51.93 -0.34 0.90 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 38 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.13 1.63 6.74 -52.48 -0.35 1.27 16 43 H 0.13 1.35 7.15 -52.49 -0.38 0.97 16 LS Contribution 351.78 15.07 5.30 5.30 Total: -1.00 -27.49 351.78 -7.45 -34.94 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.88 Total: 1.75 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -2.40 Total: -16.95 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.44 Total: -34.58 kcal Atomic # 9 Polarization: -6.29 SS G_CDS: 0.11 Total: -6.19 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.49 -7.45 -34.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536147428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.305 kcal (2) G-P(sol) polarization free energy of solvation -27.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds