Wall clock time and date at job start Tue Mar 31 2020 11:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37756 * 119.86332 * 2 1 4 4 C 1.39383 * 119.59990 * 180.02562 * 3 2 1 5 5 C 1.46790 * 134.34636 * 180.24952 * 4 3 2 6 6 C 1.33991 * 106.18161 * 180.11508 * 5 4 3 7 7 C 1.50706 * 124.91585 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.47370 * 89.71573 * 7 6 5 9 9 C 1.47439 * 111.00174 * 69.86998 * 8 7 6 10 10 C 1.54318 * 107.23790 * 236.74375 * 9 8 7 11 11 C 1.55142 * 103.17435 * 337.63015 * 10 9 8 12 12 O 1.42902 * 110.99052 * 277.64736 * 11 10 9 13 13 C 1.50696 * 110.99049 * 153.83343 * 11 10 9 14 14 H 1.07997 * 120.00014 * 4.90910 * 13 11 10 15 15 C 1.37880 * 120.00020 * 184.91282 * 13 11 10 16 16 N 1.31508 * 120.00305 * 184.14507 * 15 13 11 17 17 Si 1.86810 * 119.99735 * 4.14480 * 15 13 11 18 18 H 1.48496 * 109.46945 * 84.86591 * 17 15 13 19 19 H 1.48504 * 109.46732 * 204.86227 * 17 15 13 20 20 H 1.48496 * 109.46810 * 324.86084 * 17 15 13 21 21 C 1.47849 * 110.99981 * 309.02859 * 8 7 6 22 22 O 1.34440 * 110.16387 * 359.64900 * 6 5 4 23 23 C 1.34841 * 110.89561 * 0.23546 * 22 6 5 24 24 C 1.38878 * 133.41770 * 179.97438 * 23 22 6 25 25 C 1.37862 * 119.95430 * 180.02562 * 24 23 22 26 26 C 1.50701 * 119.65607 * 179.97438 * 25 24 23 27 27 H 1.08994 * 109.47146 * 269.98326 * 1 2 3 28 28 H 1.09002 * 109.46640 * 29.97717 * 1 2 3 29 29 H 1.08993 * 109.47323 * 149.97513 * 1 2 3 30 30 H 1.07998 * 120.20109 * 0.02562 * 3 2 1 31 31 H 1.08001 * 126.90925 * 359.97438 * 5 4 3 32 32 H 1.09002 * 109.46705 * 329.71116 * 7 6 5 33 33 H 1.09004 * 109.46691 * 209.71311 * 7 6 5 34 34 H 1.09002 * 109.88766 * 117.33803 * 9 8 7 35 35 H 1.09000 * 109.89125 * 356.15566 * 9 8 7 36 36 H 1.08999 * 110.70629 * 96.09626 * 10 9 8 37 37 H 1.08999 * 110.70428 * 219.16022 * 10 9 8 38 38 H 0.96694 * 114.00048 * 298.55226 * 12 11 10 39 39 H 0.97000 * 120.00311 * 179.97438 * 16 15 13 40 40 H 1.08994 * 110.37607 * 265.19500 * 21 8 7 41 41 H 1.09003 * 110.37199 * 27.53546 * 21 8 7 42 42 H 1.08000 * 120.02684 * 0.04385 * 24 23 22 43 43 H 1.08997 * 109.46791 * 90.00287 * 26 25 24 44 44 H 1.08997 * 109.47357 * 210.00485 * 26 25 24 45 45 H 1.09005 * 109.47148 * 330.01190 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1930 1.1946 0.0000 4 6 3.5868 1.1882 -0.0005 5 6 4.6177 2.2332 0.0039 6 6 5.7960 1.5954 -0.0021 7 6 7.1429 2.2715 -0.0010 8 7 7.5802 2.4896 1.3843 9 6 7.9182 1.2125 2.0390 10 6 7.0442 1.1029 3.3061 11 6 6.6724 2.5785 3.6079 12 8 7.7225 3.2355 4.3206 13 6 5.3729 2.6635 4.3663 14 1 4.8783 1.7607 4.6929 15 6 4.8154 3.8938 4.6431 16 7 3.7253 3.9722 5.3744 17 14 5.6087 5.4493 3.9791 18 1 5.1284 5.6985 2.5963 19 1 5.2435 6.5994 4.8448 20 1 7.0847 5.2865 3.9688 21 6 6.5245 3.1586 2.1741 22 8 5.6028 0.2649 -0.0020 23 6 4.2870 -0.0300 -0.0011 24 6 3.5762 -1.2231 -0.0011 25 6 2.1977 -1.2031 -0.0006 26 6 1.4331 -2.5017 -0.0012 27 1 -0.3633 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5142 30 1 1.6540 2.1305 0.0004 31 1 4.4584 3.3014 0.0084 32 1 7.0684 3.2304 -0.5138 33 1 7.8670 1.6396 -0.5154 34 1 8.9729 1.2046 2.3142 35 1 7.7021 0.3824 1.3665 36 1 6.1495 0.5129 3.1073 37 1 7.6129 0.6723 4.1304 38 1 7.9190 2.8425 5.1819 39 1 3.3333 4.8378 5.5694 40 1 6.6831 4.2369 2.1832 41 1 5.5405 2.9223 1.7692 42 1 4.1029 -2.1659 -0.0012 43 1 1.2491 -2.8154 1.0263 44 1 0.4817 -2.3630 -0.5147 45 1 2.0157 -3.2661 -0.5156 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:01 Heat of formation + Delta-G solvation = -6.202423 kcal Electronic energy + Delta-G solvation = -27377.322823 eV Core-core repulsion = 23747.445624 eV Total energy + Delta-G solvation = -3629.877199 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.29040 -38.94159 -38.27905 -35.18911 -33.21557 -32.33749 -32.17964 -31.55658 -29.82867 -28.40120 -27.11768 -26.91789 -25.07019 -23.66331 -22.17385 -21.25484 -20.74697 -19.84175 -19.63251 -17.31736 -17.02280 -16.30325 -16.14259 -15.41439 -15.09771 -15.02236 -14.63040 -14.19150 -14.14822 -13.88096 -13.79179 -13.33433 -12.86055 -12.79025 -12.76407 -12.72856 -12.42849 -12.34386 -12.08950 -11.74559 -11.51625 -11.45789 -11.31909 -11.26989 -11.20347 -10.72973 -10.52216 -10.46761 -10.16781 -9.97150 -9.66303 -8.96148 -8.65650 -8.35987 -8.20056 -7.97077 -7.79169 -6.16025 -4.26299 1.06979 1.50250 2.56139 2.90728 3.32512 3.44179 3.67970 3.80916 4.39828 4.48444 4.61514 4.80036 4.85537 5.01075 5.13057 5.14541 5.19922 5.27854 5.33514 5.36096 5.45382 5.53879 5.59706 5.63233 5.68220 5.71246 5.79803 5.80390 5.83531 5.94751 6.03696 6.10914 6.22190 6.29937 6.36849 6.43124 6.50998 6.65556 6.66459 6.71575 6.81058 6.85525 7.12964 7.30294 7.42930 7.44744 7.63514 8.27373 8.81252 9.02703 9.48774 10.94750 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.013765 B = 0.005144 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.673326 B = 5441.897284 C = 6379.432117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.064 4.064 4 C -0.121 4.121 5 C -0.192 4.192 6 C 0.006 3.994 7 C 0.119 3.881 8 N -0.512 5.512 9 C 0.043 3.957 10 C -0.154 4.154 11 C 0.221 3.779 12 O -0.567 6.567 13 C -0.546 4.546 14 H 0.074 0.926 15 C 0.089 3.911 16 N -0.889 5.889 17 Si 0.869 3.131 18 H -0.285 1.285 19 H -0.299 1.299 20 H -0.223 1.223 21 C 0.032 3.968 22 O -0.191 6.191 23 C 0.053 3.947 24 C -0.108 4.108 25 C -0.065 4.065 26 C -0.113 4.113 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.126 0.874 31 H 0.156 0.844 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.360 0.640 39 H 0.265 0.735 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.127 0.873 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.483 -8.930 -13.066 15.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.107 4.107 3 C -0.082 4.082 4 C -0.122 4.122 5 C -0.212 4.212 6 C -0.044 4.044 7 C -0.010 4.010 8 N -0.234 5.234 9 C -0.084 4.084 10 C -0.192 4.192 11 C 0.181 3.819 12 O -0.373 6.373 13 C -0.584 4.584 14 H 0.092 0.908 15 C -0.116 4.116 16 N -0.526 5.526 17 Si 0.697 3.303 18 H -0.212 1.212 19 H -0.227 1.227 20 H -0.146 1.146 21 C -0.095 4.095 22 O -0.093 6.093 23 C 0.006 3.994 24 C -0.127 4.127 25 C -0.066 4.066 26 C -0.169 4.169 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.144 0.856 31 H 0.173 0.827 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.206 0.794 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.145 0.855 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.915 -8.327 -13.542 15.924 hybrid contribution -0.644 0.191 0.359 0.762 sum -1.559 -8.136 -13.184 15.570 Atomic orbital electron populations 1.20796 0.90961 1.02510 1.02494 1.19529 0.96048 0.92047 1.03044 1.20369 0.91457 0.97901 0.98521 1.19866 0.94350 0.92746 1.05211 1.22268 0.90398 0.99531 1.09004 1.23498 0.98978 0.80111 1.01793 1.21371 0.87111 0.98893 0.93603 1.64067 1.38256 1.20536 1.00541 1.22818 1.00054 0.89811 0.95735 1.23282 0.98896 1.00382 0.96677 1.20096 0.86889 0.86337 0.88596 1.86525 1.57299 1.59341 1.34114 1.21226 1.05349 0.94630 1.37191 0.90790 1.24958 0.93933 0.99412 0.93298 1.69937 1.20544 1.25512 1.36601 0.87161 0.83584 0.81693 0.77892 1.21153 1.22690 1.14602 1.23877 0.93438 0.98673 0.93467 1.83969 1.24275 1.24605 1.76418 1.19545 0.81459 0.95470 1.02925 1.19616 0.92394 0.94517 1.06162 1.19377 0.92003 0.95182 1.00004 1.20833 0.99830 0.93617 1.02619 0.91073 0.91731 0.91307 0.85598 0.82680 0.87614 0.89184 0.90862 0.93151 0.91616 0.91772 0.79387 0.92522 0.91072 0.90408 0.85492 0.90876 0.90941 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.59 36.01 0.35 -0.81 16 2 C -0.11 -1.47 5.88 -104.62 -0.61 -2.09 16 3 C -0.06 -1.02 9.74 -39.33 -0.38 -1.41 16 4 C -0.12 -2.16 6.40 -105.16 -0.67 -2.83 16 5 C -0.19 -3.41 8.81 -37.62 -0.33 -3.74 16 6 C 0.01 0.10 5.19 -35.80 -0.19 -0.09 16 7 C 0.12 1.84 5.79 -4.97 -0.03 1.81 16 8 N -0.51 -9.63 5.41 -232.37 -1.26 -10.89 16 9 C 0.04 0.78 6.47 -2.84 -0.02 0.76 16 10 C -0.15 -3.17 6.10 -24.91 -0.15 -3.32 16 11 C 0.22 5.22 0.69 -89.38 -0.06 5.16 16 12 O -0.57 -13.13 10.50 -35.23 -0.37 -13.50 16 13 C -0.55 -15.26 8.88 -34.44 -0.31 -15.57 16 14 H 0.07 2.27 8.03 -52.49 -0.42 1.85 16 15 C 0.09 2.55 5.47 -17.82 -0.10 2.46 16 16 N -0.89 -27.07 13.96 55.43 0.77 -26.29 16 17 Si 0.87 22.05 23.96 -169.99 -4.07 17.97 16 18 H -0.28 -7.01 7.08 56.52 0.40 -6.61 16 19 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 20 H -0.22 -5.62 5.50 56.52 0.31 -5.31 16 21 C 0.03 0.71 4.43 -2.04 -0.01 0.70 16 22 O -0.19 -3.40 9.92 3.84 0.04 -3.36 16 23 C 0.05 0.93 7.41 -38.49 -0.29 0.65 16 24 C -0.11 -1.60 9.69 -39.48 -0.38 -1.99 16 25 C -0.07 -0.87 5.88 -104.58 -0.61 -1.48 16 26 C -0.11 -1.06 9.58 36.01 0.35 -0.72 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.07 0.58 5.91 -51.93 -0.31 0.27 16 30 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.16 2.59 7.96 -52.49 -0.42 2.17 16 32 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.09 1.18 8.04 -51.93 -0.42 0.77 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 0.85 6.67 -51.93 -0.35 0.51 16 36 H 0.07 1.45 8.03 -51.93 -0.42 1.04 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.36 7.24 9.11 45.56 0.41 7.66 16 39 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.07 1.67 4.95 -51.93 -0.26 1.41 16 41 H 0.08 1.78 4.27 -51.93 -0.22 1.56 16 42 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.57 5.91 -51.93 -0.31 0.27 16 45 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 LS Contribution 349.61 15.07 5.27 5.27 Total: -1.00 -32.92 349.61 -8.80 -41.71 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -5.72 Total: 11.60 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -3.45 Total: -22.51 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.48 Total: -37.18 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.33 Total: -16.87 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.07 Total: 17.97 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.92 -8.80 -41.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.511 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds