Wall clock time and date at job start Tue Mar 31 2020 12:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 115.55132 * 2 1 4 4 O 1.21286 * 119.99736 * 259.83402 * 3 2 1 5 5 N 1.34768 * 120.00228 * 79.83208 * 3 2 1 6 6 C 1.47427 * 125.64943 * 4.97921 * 5 3 2 7 7 C 1.55124 * 104.72537 * 155.81657 * 6 5 3 8 8 C 1.55163 * 101.48350 * 37.29609 * 7 6 5 9 9 O 1.42908 * 110.71747 * 82.69664 * 8 7 6 10 10 C 1.50703 * 110.71989 * 205.96327 * 8 7 6 11 11 H 1.08008 * 119.99361 * 113.52401 * 10 8 7 12 12 C 1.37877 * 120.00553 * 293.52630 * 10 8 7 13 13 N 1.31514 * 119.99717 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99911 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46883 * 90.00240 * 14 12 10 16 16 H 1.48504 * 109.47114 * 209.99961 * 14 12 10 17 17 H 1.48492 * 109.47344 * 330.00205 * 14 12 10 18 18 C 1.47025 * 125.65102 * 185.28827 * 5 3 2 19 19 C 1.53004 * 117.50043 * 214.28949 * 2 1 3 20 20 C 1.53001 * 60.00095 * 252.51343 * 19 2 1 21 21 H 1.09002 * 117.51776 * 252.51910 * 20 19 2 22 22 C 1.50701 * 117.50042 * 107.48583 * 20 19 2 23 23 C 1.38236 * 120.00119 * 351.59172 * 22 20 19 24 24 C 1.38237 * 119.99700 * 180.25136 * 23 22 20 25 25 C 1.38230 * 120.00079 * 359.51627 * 24 23 22 26 26 C 1.38232 * 120.00097 * 0.27176 * 25 24 23 27 27 C 1.38235 * 120.00209 * 359.95956 * 26 25 24 28 28 H 1.08992 * 109.47600 * 268.17762 * 1 2 3 29 29 H 1.09006 * 109.46903 * 28.18337 * 1 2 3 30 30 H 1.09005 * 109.46899 * 148.17679 * 1 2 3 31 31 H 1.08995 * 110.36549 * 274.75032 * 6 5 3 32 32 H 1.09000 * 110.36295 * 37.07292 * 6 5 3 33 33 H 1.09004 * 111.19772 * 279.19438 * 7 6 5 34 34 H 1.09004 * 110.94086 * 155.28989 * 7 6 5 35 35 H 0.96704 * 113.99748 * 66.47753 * 9 8 7 36 36 H 0.97000 * 119.99596 * 179.97438 * 13 12 10 37 37 H 1.08999 * 109.88585 * 300.43931 * 18 5 3 38 38 H 1.08998 * 109.87893 * 61.45173 * 18 5 3 39 39 H 1.09001 * 117.49711 * 145.02345 * 19 2 1 40 40 H 1.09001 * 117.49771 * 0.02562 * 19 2 1 41 41 H 1.08001 * 119.99632 * 0.03983 * 23 22 20 42 42 H 1.08001 * 119.99641 * 179.78436 * 24 23 22 43 43 H 1.08002 * 119.99765 * 180.24944 * 25 24 23 44 44 H 1.08002 * 119.99828 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.00080 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 2.6088 1.8267 -1.0339 5 7 2.2847 2.0564 1.1488 6 6 1.9030 1.5696 2.4870 7 6 2.7540 2.4141 3.4713 8 6 2.7512 3.7993 2.7722 9 8 1.5568 4.5199 3.0826 10 6 3.9713 4.5945 3.1596 11 1 4.7218 4.8272 2.4186 12 6 4.1294 5.0251 4.4598 13 7 3.2157 4.7413 5.3621 14 14 5.6421 6.0102 4.9400 15 1 5.3687 7.4582 4.7562 16 1 5.9738 5.7458 6.3632 17 1 6.7863 5.6098 4.0824 18 6 2.7927 3.4304 1.2743 19 6 2.2365 -1.1213 -0.7646 20 6 2.2364 -1.1208 0.7654 21 1 3.1713 -0.8747 1.2690 22 6 1.3719 -2.1401 1.4616 23 6 0.4882 -2.9118 0.7305 24 6 -0.3085 -3.8432 1.3699 25 6 -0.2144 -4.0098 2.7389 26 6 0.6724 -3.2411 3.4693 27 6 1.4657 -2.3064 2.8307 28 1 -0.3634 -0.0327 1.0270 29 1 -0.3633 0.9059 -0.4854 30 1 -0.3633 -0.8732 -0.5419 31 1 0.8401 1.7354 2.6620 32 1 2.1446 0.5116 2.5888 33 1 3.7670 2.0205 3.5545 34 1 2.2771 2.4695 4.4500 35 1 1.4820 4.7754 4.0122 36 1 3.3272 5.0439 6.2770 37 1 3.8181 3.4815 0.9082 38 1 2.1615 4.1124 0.7046 39 1 3.1716 -0.8756 -1.2679 40 1 1.6113 -1.8587 -1.2680 41 1 0.4179 -2.7847 -0.3397 42 1 -1.0014 -4.4437 0.7991 43 1 -0.8340 -4.7403 3.2378 44 1 0.7456 -3.3710 4.5390 45 1 2.1588 -1.7061 3.4014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592855713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:11 Heat of formation + Delta-G solvation = -33.977360 kcal Electronic energy + Delta-G solvation = -26872.822067 eV Core-core repulsion = 23241.740457 eV Total energy + Delta-G solvation = -3631.081610 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.51802 -39.11510 -37.59499 -36.42940 -34.31095 -32.17540 -31.16809 -30.83795 -29.69736 -28.63364 -28.29555 -25.45856 -23.98349 -23.29466 -22.50320 -21.40899 -20.39531 -19.58054 -18.39861 -17.26534 -16.99965 -16.55559 -15.61908 -15.32616 -15.09414 -14.92271 -14.74622 -14.36349 -14.13300 -13.57972 -13.41223 -13.27233 -13.04260 -12.95423 -12.69394 -12.36129 -12.05684 -11.97663 -11.79356 -11.63344 -11.41573 -11.36922 -11.25012 -11.07412 -10.91494 -10.66361 -10.51199 -10.50097 -10.15663 -10.07543 -9.49401 -9.31329 -9.01289 -8.69148 -8.59691 -8.23128 -8.01393 -6.32272 -4.39435 1.19516 1.30156 2.98049 3.18528 3.25896 3.28582 3.34526 3.53170 3.99309 4.24591 4.40050 4.64054 4.70382 4.82789 4.87134 4.92810 4.98063 5.02326 5.13579 5.36188 5.48086 5.57671 5.58204 5.70738 5.74526 5.79725 5.84344 5.87991 5.93342 5.95586 6.00095 6.04035 6.13031 6.26819 6.37529 6.41681 6.44039 6.54332 6.68253 6.88818 6.89976 6.95454 7.27507 7.31616 7.71078 7.97680 8.10512 8.59909 8.64322 9.29087 9.43058 10.75562 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.003746 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.234045 B = 7473.707137 C = 8386.582726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.130 4.130 3 C 0.556 3.444 4 O -0.551 6.551 5 N -0.600 5.600 6 C 0.098 3.902 7 C -0.137 4.137 8 C 0.249 3.751 9 O -0.587 6.587 10 C -0.535 4.535 11 H 0.065 0.935 12 C 0.072 3.928 13 N -0.898 5.898 14 Si 0.903 3.097 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.121 3.879 19 C -0.140 4.140 20 C -0.105 4.105 21 H 0.117 0.883 22 C -0.043 4.043 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.127 4.127 26 C -0.116 4.116 27 C -0.110 4.110 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.386 0.614 36 H 0.269 0.731 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.288 -16.609 -3.541 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.133 4.133 3 C 0.343 3.657 4 O -0.429 6.429 5 N -0.332 5.332 6 C -0.025 4.025 7 C -0.176 4.176 8 C 0.208 3.792 9 O -0.397 6.397 10 C -0.573 4.573 11 H 0.083 0.917 12 C -0.130 4.130 13 N -0.538 5.538 14 Si 0.731 3.269 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.197 1.197 18 C 0.000 4.000 19 C -0.177 4.177 20 C -0.123 4.123 21 H 0.135 0.865 22 C -0.043 4.043 23 C -0.136 4.136 24 C -0.138 4.138 25 C -0.145 4.145 26 C -0.134 4.134 27 C -0.128 4.128 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.238 0.762 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.216 -16.442 -4.591 18.168 hybrid contribution 0.879 0.615 1.112 1.545 sum -5.337 -15.827 -3.479 17.061 Atomic orbital electron populations 1.21251 0.89928 1.02410 1.02616 1.21493 0.96311 0.89069 1.06419 1.19047 0.79055 0.85075 0.82480 1.90665 1.49715 1.70740 1.31820 1.48572 1.61697 1.16091 1.06822 1.22559 0.99482 0.98096 0.82323 1.23355 0.98588 0.97434 0.98185 1.19419 0.84535 0.88053 0.87157 1.86100 1.42752 1.76835 1.34012 1.21556 1.05513 1.34993 0.95263 0.91719 1.24981 0.96860 0.95106 0.96031 1.69575 1.34668 1.46072 1.03463 0.86405 0.82555 0.80327 0.77656 1.20360 1.21016 1.19710 1.22109 0.98566 0.80526 0.98836 1.23251 1.02810 0.98631 0.92971 1.21307 0.99876 0.96969 0.94151 0.86461 1.19055 0.96248 0.95590 0.93412 1.21077 0.96346 0.96232 0.99960 1.21089 0.99393 0.98521 0.94777 1.21131 0.99126 0.99923 0.94319 1.21145 0.96247 0.96096 0.99938 1.21061 0.99659 0.98268 0.93792 0.91494 0.91797 0.91563 0.92091 0.91878 0.91522 0.89701 0.76194 0.92090 0.91028 0.92141 0.87706 0.87673 0.85943 0.86255 0.86337 0.85998 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 8.53 37.16 0.32 -1.01 16 2 C -0.13 -1.86 1.82 -155.66 -0.28 -2.15 16 3 C 0.56 10.58 6.94 -10.99 -0.08 10.51 16 4 O -0.55 -12.26 17.33 5.55 0.10 -12.17 16 5 N -0.60 -11.91 3.32 -170.39 -0.57 -12.48 16 6 C 0.10 1.78 6.63 -2.41 -0.02 1.76 16 7 C -0.14 -2.90 5.69 -24.46 -0.14 -3.04 16 8 C 0.25 5.96 0.86 -89.94 -0.08 5.88 16 9 O -0.59 -14.75 13.09 -35.23 -0.46 -15.21 16 10 C -0.53 -13.88 8.21 -34.44 -0.28 -14.17 16 11 H 0.06 1.69 7.53 -52.48 -0.40 1.29 16 12 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 13 N -0.90 -22.78 10.70 55.43 0.59 -22.18 16 14 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 C 0.12 2.75 6.22 -3.07 -0.02 2.73 16 19 C -0.14 -1.69 9.14 -26.73 -0.24 -1.94 16 20 C -0.10 -1.31 4.15 -91.77 -0.38 -1.69 16 21 H 0.12 1.55 7.81 -51.93 -0.41 1.14 16 22 C -0.04 -0.49 4.93 -104.62 -0.52 -1.00 16 23 C -0.12 -1.19 7.90 -39.58 -0.31 -1.50 16 24 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 25 C -0.13 -1.16 10.05 -39.59 -0.40 -1.56 16 26 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 27 C -0.11 -1.22 9.74 -39.58 -0.39 -1.61 16 28 H 0.07 0.85 7.98 -51.93 -0.41 0.43 16 29 H 0.06 0.86 8.02 -51.93 -0.42 0.45 16 30 H 0.07 0.68 6.32 -51.93 -0.33 0.36 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.98 5.89 -51.93 -0.31 0.68 16 33 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 34 H 0.08 1.87 7.77 -51.93 -0.40 1.47 16 35 H 0.39 9.78 6.99 45.56 0.32 10.10 16 36 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 37 H 0.07 1.66 7.63 -51.93 -0.40 1.26 16 38 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 39 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.11 1.02 6.06 -51.93 -0.31 0.71 16 41 H 0.12 1.07 5.24 -52.49 -0.27 0.80 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.12 1.34 7.91 -52.49 -0.42 0.92 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -28.64 361.53 -9.45 -38.09 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -5.84 Total: 13.51 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -3.70 Total: -10.07 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.03 Total: -34.66 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.36 Total: -27.38 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.64 -9.45 -38.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592855713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.117 kcal (2) G-P(sol) polarization free energy of solvation -28.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds