Wall clock time and date at job start Tue Mar 31 2020 12:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 115.55132 * 2 1 4 4 O 1.21286 * 119.99736 * 259.83402 * 3 2 1 5 5 N 1.34768 * 120.00228 * 79.83208 * 3 2 1 6 6 C 1.47427 * 125.64943 * 4.97921 * 5 3 2 7 7 C 1.55124 * 104.72537 * 155.81657 * 6 5 3 8 8 C 1.55163 * 101.48350 * 37.29609 * 7 6 5 9 9 O 1.42908 * 110.71747 * 82.69664 * 8 7 6 10 10 C 1.50703 * 110.71989 * 205.96327 * 8 7 6 11 11 H 1.08008 * 119.99361 * 113.52401 * 10 8 7 12 12 C 1.37877 * 120.00553 * 293.52630 * 10 8 7 13 13 N 1.31514 * 119.99717 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99911 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46883 * 90.00240 * 14 12 10 16 16 H 1.48504 * 109.47114 * 209.99961 * 14 12 10 17 17 H 1.48492 * 109.47344 * 330.00205 * 14 12 10 18 18 C 1.47025 * 125.65102 * 185.28827 * 5 3 2 19 19 C 1.53004 * 117.50043 * 214.28949 * 2 1 3 20 20 C 1.53001 * 60.00095 * 252.51343 * 19 2 1 21 21 H 1.09002 * 117.51776 * 252.51910 * 20 19 2 22 22 C 1.50701 * 117.50042 * 107.48583 * 20 19 2 23 23 C 1.38236 * 120.00119 * 351.59172 * 22 20 19 24 24 C 1.38237 * 119.99700 * 180.25136 * 23 22 20 25 25 C 1.38230 * 120.00079 * 359.51627 * 24 23 22 26 26 C 1.38232 * 120.00097 * 0.27176 * 25 24 23 27 27 C 1.38235 * 120.00209 * 359.95956 * 26 25 24 28 28 H 1.08992 * 109.47600 * 268.17762 * 1 2 3 29 29 H 1.09006 * 109.46903 * 28.18337 * 1 2 3 30 30 H 1.09005 * 109.46899 * 148.17679 * 1 2 3 31 31 H 1.08995 * 110.36549 * 274.75032 * 6 5 3 32 32 H 1.09000 * 110.36295 * 37.07292 * 6 5 3 33 33 H 1.09004 * 111.19772 * 279.19438 * 7 6 5 34 34 H 1.09004 * 110.94086 * 155.28989 * 7 6 5 35 35 H 0.96704 * 113.99748 * 66.47753 * 9 8 7 36 36 H 0.97000 * 119.99596 * 179.97438 * 13 12 10 37 37 H 1.08999 * 109.88585 * 300.43931 * 18 5 3 38 38 H 1.08998 * 109.87893 * 61.45173 * 18 5 3 39 39 H 1.09001 * 117.49711 * 145.02345 * 19 2 1 40 40 H 1.09001 * 117.49771 * 0.02562 * 19 2 1 41 41 H 1.08001 * 119.99632 * 0.03983 * 23 22 20 42 42 H 1.08001 * 119.99641 * 179.78436 * 24 23 22 43 43 H 1.08002 * 119.99765 * 180.24944 * 25 24 23 44 44 H 1.08002 * 119.99828 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.00080 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 2.6088 1.8267 -1.0339 5 7 2.2847 2.0564 1.1488 6 6 1.9030 1.5696 2.4870 7 6 2.7540 2.4141 3.4713 8 6 2.7512 3.7993 2.7722 9 8 1.5568 4.5199 3.0826 10 6 3.9713 4.5945 3.1596 11 1 4.7218 4.8272 2.4186 12 6 4.1294 5.0251 4.4598 13 7 3.2157 4.7413 5.3621 14 14 5.6421 6.0102 4.9400 15 1 5.3687 7.4582 4.7562 16 1 5.9738 5.7458 6.3632 17 1 6.7863 5.6098 4.0824 18 6 2.7927 3.4304 1.2743 19 6 2.2365 -1.1213 -0.7646 20 6 2.2364 -1.1208 0.7654 21 1 3.1713 -0.8747 1.2690 22 6 1.3719 -2.1401 1.4616 23 6 0.4882 -2.9118 0.7305 24 6 -0.3085 -3.8432 1.3699 25 6 -0.2144 -4.0098 2.7389 26 6 0.6724 -3.2411 3.4693 27 6 1.4657 -2.3064 2.8307 28 1 -0.3634 -0.0327 1.0270 29 1 -0.3633 0.9059 -0.4854 30 1 -0.3633 -0.8732 -0.5419 31 1 0.8401 1.7354 2.6620 32 1 2.1446 0.5116 2.5888 33 1 3.7670 2.0205 3.5545 34 1 2.2771 2.4695 4.4500 35 1 1.4820 4.7754 4.0122 36 1 3.3272 5.0439 6.2770 37 1 3.8181 3.4815 0.9082 38 1 2.1615 4.1124 0.7046 39 1 3.1716 -0.8756 -1.2679 40 1 1.6113 -1.8587 -1.2680 41 1 0.4179 -2.7847 -0.3397 42 1 -1.0014 -4.4437 0.7991 43 1 -0.8340 -4.7403 3.2378 44 1 0.7456 -3.3710 4.5390 45 1 2.1588 -1.7061 3.4014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592855713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:10 Heat of formation + Delta-G solvation = -50.137293 kcal Electronic energy + Delta-G solvation = -26873.522814 eV Core-core repulsion = 23241.740457 eV Total energy + Delta-G solvation = -3631.782358 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.73929 -40.28439 -39.13743 -37.65754 -36.13691 -34.17163 -31.98961 -31.72118 -31.26299 -30.14314 -29.53345 -27.29305 -24.93481 -24.66248 -23.51226 -22.67885 -21.44492 -21.25265 -19.84542 -19.16986 -17.95079 -17.79352 -17.04267 -16.96076 -16.72101 -16.18284 -15.93751 -15.60069 -15.37476 -14.87326 -14.69816 -14.49579 -14.32877 -14.05285 -13.87806 -13.61316 -13.51948 -13.31591 -13.25588 -13.15194 -13.10885 -12.78529 -12.68968 -12.45603 -12.28753 -12.12807 -12.03820 -11.84334 -11.49739 -11.34376 -11.08380 -10.84990 -10.63127 -10.16709 -9.72941 -9.69580 -9.41497 -8.27757 -6.42027 0.43767 0.58607 1.40393 1.43504 1.49154 1.52228 1.90982 2.37849 2.55366 2.97534 3.11102 3.31323 3.60666 3.65983 3.81561 3.90060 3.94829 4.00508 4.19849 4.22281 4.27486 4.34384 4.38188 4.53550 4.60479 4.61304 4.69768 4.73455 4.78960 4.82719 4.88088 4.90253 5.03200 5.13368 5.15275 5.19482 5.21822 5.26195 5.42401 5.47035 5.66425 5.71574 5.73728 5.77276 6.02683 6.18721 6.52834 6.61996 7.05407 7.28973 7.42174 8.78835 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.003746 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.234045 B = 7473.707137 C = 8386.582726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.144 4.144 3 C 0.551 3.449 4 O -0.589 6.589 5 N -0.603 5.603 6 C 0.112 3.888 7 C -0.126 4.126 8 C 0.238 3.762 9 O -0.594 6.594 10 C -0.565 4.565 11 H 0.052 0.948 12 C 0.039 3.961 13 N -0.907 5.907 14 Si 0.960 3.040 15 H -0.278 1.278 16 H -0.275 1.275 17 H -0.275 1.275 18 C 0.126 3.874 19 C -0.127 4.127 20 C -0.092 4.092 21 H 0.106 0.894 22 C -0.056 4.056 23 C -0.121 4.121 24 C -0.121 4.121 25 C -0.128 4.128 26 C -0.125 4.125 27 C -0.127 4.127 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.383 0.617 36 H 0.274 0.726 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.094 0.906 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.135 0.865 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.280 -19.109 -3.240 20.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.147 4.147 3 C 0.341 3.659 4 O -0.470 6.470 5 N -0.335 5.335 6 C -0.010 4.010 7 C -0.165 4.165 8 C 0.198 3.802 9 O -0.404 6.404 10 C -0.603 4.603 11 H 0.070 0.930 12 C -0.163 4.163 13 N -0.546 5.546 14 Si 0.785 3.215 15 H -0.203 1.203 16 H -0.200 1.200 17 H -0.199 1.199 18 C 0.004 3.996 19 C -0.164 4.164 20 C -0.110 4.110 21 H 0.124 0.876 22 C -0.056 4.056 23 C -0.139 4.139 24 C -0.139 4.139 25 C -0.146 4.146 26 C -0.143 4.143 27 C -0.145 4.145 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.234 0.766 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.112 0.888 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.162 0.838 43 H 0.159 0.841 44 H 0.153 0.847 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.222 -18.964 -4.278 20.739 hybrid contribution 1.180 1.383 1.021 2.085 sum -6.042 -17.581 -3.258 18.874 Atomic orbital electron populations 1.21245 0.88344 1.03023 1.02911 1.21422 0.97170 0.86661 1.09480 1.19960 0.78091 0.86483 0.81334 1.90632 1.51291 1.72098 1.33022 1.48645 1.61830 1.15019 1.07983 1.22489 0.98977 0.99014 0.80475 1.23142 0.98718 0.96370 0.98290 1.19546 0.83586 0.89048 0.88022 1.86085 1.43299 1.77289 1.33777 1.21748 1.06265 1.36563 0.95685 0.92996 1.25580 0.99211 0.95677 0.95797 1.69624 1.35411 1.45944 1.03657 0.85530 0.79538 0.78829 0.77558 1.20349 1.20009 1.19945 1.21840 0.97595 0.82261 0.97945 1.23396 1.02427 0.97564 0.92981 1.21250 0.99194 0.95998 0.94581 0.87644 1.18988 0.97050 0.96073 0.93534 1.21263 0.95895 0.96014 1.00687 1.21423 0.99274 0.98192 0.95008 1.21474 0.98715 0.99782 0.94624 1.21373 0.96204 0.95907 1.00837 1.21164 1.00285 0.99046 0.93992 0.91516 0.93259 0.88665 0.91651 0.88937 0.92212 0.90439 0.76552 0.91675 0.92342 0.93870 0.88761 0.84560 0.84498 0.83799 0.84143 0.84734 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.28 8.53 71.98 0.61 -1.67 16 2 C -0.14 -3.96 1.82 -52.93 -0.10 -4.06 16 3 C 0.55 21.20 6.94 87.66 0.61 21.81 16 4 O -0.59 -26.93 17.33 -3.05 -0.05 -26.98 16 5 N -0.60 -24.40 3.32 -811.38 -2.70 -27.10 16 6 C 0.11 4.04 6.63 86.93 0.58 4.62 16 7 C -0.13 -5.43 5.69 32.06 0.18 -5.25 16 8 C 0.24 11.73 0.86 -10.35 -0.01 11.72 16 9 O -0.59 -30.61 13.09 -148.98 -1.95 -32.56 16 10 C -0.56 -30.08 8.21 25.60 0.21 -29.87 16 11 H 0.05 2.82 7.53 -2.91 -0.02 2.80 16 12 C 0.04 1.98 5.28 84.65 0.45 2.42 16 13 N -0.91 -46.04 10.70 21.45 0.23 -45.81 16 14 Si 0.96 41.28 29.54 68.60 2.03 43.30 16 15 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 16 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 C 0.13 5.98 6.22 86.73 0.54 6.52 16 19 C -0.13 -2.82 9.14 30.60 0.28 -2.54 16 20 C -0.09 -2.15 4.15 -11.54 -0.05 -2.20 16 21 H 0.11 2.71 7.81 -2.39 -0.02 2.69 16 22 C -0.06 -1.14 4.93 -19.86 -0.10 -1.24 16 23 C -0.12 -1.99 7.90 22.27 0.18 -1.82 16 24 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 25 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 26 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 27 C -0.13 -2.59 9.74 22.27 0.22 -2.37 16 28 H 0.07 1.55 7.98 -2.39 -0.02 1.53 16 29 H 0.05 1.28 8.02 -2.38 -0.02 1.26 16 30 H 0.09 1.64 6.32 -2.38 -0.02 1.62 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.09 2.79 5.89 -2.39 -0.01 2.78 16 33 H 0.06 2.62 8.04 -2.39 -0.02 2.60 16 34 H 0.08 3.43 7.77 -2.39 -0.02 3.41 16 35 H 0.38 19.81 6.99 -74.05 -0.52 19.30 16 36 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 37 H 0.06 2.86 7.63 -2.39 -0.02 2.85 16 38 H 0.04 2.14 8.07 -2.39 -0.02 2.12 16 39 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.14 2.15 6.06 -2.39 -0.01 2.13 16 41 H 0.14 1.78 5.24 -2.91 -0.02 1.77 16 42 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 43 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 44 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 45 H 0.12 2.45 7.91 -2.91 -0.02 2.43 16 Total: -1.00 -62.64 361.53 2.31 -60.33 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: 0.49 Total: 37.88 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 4.27 Total: -9.06 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -2.47 Total: -72.91 kcal Atomic # 8 Polarization: -57.55 SS G_CDS: -2.00 Total: -59.55 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -62.64 2.31 -60.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592855713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.189 kcal (2) G-P(sol) polarization free energy of solvation -62.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds