Wall clock time and date at job start Tue Mar 31 2020 10:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99887 * 2 1 4 4 H 1.48494 * 109.47238 * 269.99858 * 3 2 1 5 5 H 1.48500 * 109.47158 * 30.00205 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99912 * 3 2 1 7 7 C 1.37877 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99530 * 179.97438 * 7 2 1 10 10 H 1.09005 * 109.49881 * 60.07341 * 9 7 2 11 11 C 1.53039 * 109.50284 * 300.00247 * 9 7 2 12 12 C 1.53046 * 109.52798 * 178.69012 * 11 9 7 13 13 C 1.53159 * 109.32667 * 61.37318 * 12 11 9 14 14 N 1.46928 * 108.76987 * 305.35456 * 13 12 11 15 15 C 1.34773 * 120.63179 * 233.59029 * 14 13 12 16 16 O 1.21283 * 119.99742 * 180.02562 * 15 14 13 17 17 C 1.50697 * 120.00193 * 0.02562 * 15 14 13 18 18 H 1.09003 * 115.54987 * 34.41658 * 17 15 14 19 19 C 1.52995 * 117.50363 * 248.75086 * 17 15 14 20 20 C 1.52991 * 117.50309 * 180.08948 * 17 15 14 21 21 H 1.09008 * 117.49784 * 359.97438 * 20 17 15 22 22 C 1.50702 * 117.50145 * 214.98358 * 20 17 15 23 23 C 1.38284 * 119.97031 * 299.99819 * 22 20 17 24 24 C 1.38246 * 120.10980 * 180.02562 * 23 22 20 25 25 C 1.38161 * 120.05806 * 359.95245 * 24 23 22 26 26 C 1.38715 * 119.94323 * 0.02618 * 25 24 23 27 27 O 1.35904 * 120.05307 * 180.02562 * 26 25 24 28 28 C 1.38128 * 119.97389 * 119.72050 * 22 20 17 29 29 C 1.46931 * 118.73792 * 53.61250 * 14 13 12 30 30 H 0.97002 * 119.99938 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46050 * 298.70598 * 11 9 7 32 32 H 1.09004 * 109.46034 * 58.67814 * 11 9 7 33 33 H 1.08996 * 109.49379 * 181.30938 * 12 11 9 34 34 H 1.08994 * 109.49581 * 301.40708 * 12 11 9 35 35 H 1.08999 * 109.58991 * 185.56748 * 13 12 11 36 36 H 1.08998 * 109.59395 * 65.13869 * 13 12 11 37 37 H 1.09006 * 117.49773 * 359.97438 * 19 17 15 38 38 H 1.09004 * 117.50234 * 144.99132 * 19 17 15 39 39 H 1.08001 * 119.94390 * 359.97409 * 23 22 20 40 40 H 1.08007 * 119.97040 * 179.97438 * 24 23 22 41 41 H 1.08001 * 120.02834 * 180.02562 * 25 24 23 42 42 H 0.96698 * 113.99595 * 90.00313 * 27 26 25 43 43 H 1.07999 * 120.02574 * 0.02562 * 28 22 20 44 44 H 1.08998 * 109.58425 * 186.61021 * 29 14 13 45 45 H 1.08999 * 109.58795 * 66.17471 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8757 -0.6808 0.8900 11 6 4.0219 -0.4735 -1.2500 12 6 5.5520 -0.4445 -1.2348 13 6 6.0864 -1.8797 -1.2524 14 7 5.4861 -2.6214 -0.1351 15 6 6.2629 -3.2743 0.7519 16 8 5.7551 -3.8833 1.6697 17 6 7.7623 -3.2476 0.6034 18 1 8.1794 -2.3204 0.2103 19 6 8.4574 -4.5545 0.2167 20 6 8.5887 -4.0097 1.6411 21 1 8.0479 -4.5302 2.4316 22 6 9.9172 -3.4214 2.0412 23 6 10.9007 -3.2251 1.0891 24 6 12.1206 -2.6861 1.4531 25 6 12.3597 -2.3412 2.7694 26 6 11.3746 -2.5367 3.7263 27 8 11.6072 -2.1977 5.0217 28 6 10.1494 -3.0733 3.3576 29 6 4.0228 -2.6382 -0.0034 30 1 -0.4850 0.8401 -0.0004 31 1 3.6775 -1.0012 -2.1394 32 1 3.6395 0.5472 -1.2624 33 1 5.9144 0.0891 -2.1135 34 1 5.8973 0.0614 -0.3333 35 1 7.1707 -1.8673 -1.1421 36 1 5.8183 -2.3581 -2.1944 37 1 7.8301 -5.4339 0.0701 38 1 9.3316 -4.4872 -0.4308 39 1 10.7157 -3.4942 0.0597 40 1 12.8873 -2.5342 0.7077 41 1 13.3127 -1.9198 3.0532 42 1 11.3618 -1.2883 5.2404 43 1 9.3795 -3.2230 4.1000 44 1 3.7456 -3.1261 0.9310 45 1 3.5865 -3.1783 -0.8436 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597900798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:44 Heat of formation + Delta-G solvation = -26.333847 kcal Electronic energy + Delta-G solvation = -25869.350069 eV Core-core repulsion = 22238.599906 eV Total energy + Delta-G solvation = -3630.750163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.53897 -39.72117 -37.95340 -36.96687 -35.73544 -33.52650 -31.78869 -31.23298 -30.63028 -29.79071 -26.12850 -25.05245 -24.13930 -23.35628 -22.69992 -21.71365 -20.90749 -19.74131 -18.52855 -18.24233 -17.34846 -16.80587 -16.65351 -16.02576 -15.45644 -15.43259 -15.16836 -14.61291 -14.36498 -13.92370 -13.88398 -13.75489 -13.29133 -12.86853 -12.78948 -12.66991 -12.55897 -12.34977 -12.22303 -12.00367 -11.78511 -11.41528 -11.19013 -10.97033 -10.85731 -10.63162 -10.55982 -10.34636 -10.18294 -9.86834 -9.63928 -9.34318 -9.06496 -9.03959 -8.78393 -8.59218 -8.12281 -6.12174 -4.12341 0.91007 1.01845 2.67697 3.18095 3.21273 3.33690 3.35781 3.38008 3.75315 3.99629 4.32086 4.35961 4.55345 4.60598 4.67540 4.79191 4.82552 4.93487 5.03869 5.16148 5.21006 5.27441 5.31633 5.41856 5.52513 5.58147 5.65798 5.77982 5.84364 5.89095 5.94725 6.03669 6.09604 6.13651 6.16941 6.32487 6.33670 6.49069 6.51220 6.64999 6.70323 6.82537 7.10388 7.35576 7.42928 7.69603 7.80671 8.43378 8.49801 8.91086 9.49310 11.00849 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.002973 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.279527 B = 9416.482837 C = 9772.357296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.005 3.995 10 H 0.030 0.970 11 C -0.122 4.122 12 C -0.140 4.140 13 C 0.111 3.889 14 N -0.602 5.602 15 C 0.538 3.462 16 O -0.546 6.546 17 C -0.173 4.173 18 H 0.125 0.875 19 C -0.143 4.143 20 C -0.090 4.090 21 H 0.128 0.872 22 C -0.031 4.031 23 C -0.130 4.130 24 C -0.101 4.101 25 C -0.152 4.152 26 C 0.107 3.893 27 O -0.500 6.500 28 C -0.134 4.134 29 C 0.128 3.872 30 H 0.264 0.736 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.391 0.609 43 H 0.131 0.869 44 H 0.086 0.914 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.264 -3.706 -0.679 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.094 0.906 9 C -0.014 4.014 10 H 0.048 0.952 11 C -0.160 4.160 12 C -0.179 4.179 13 C -0.012 4.012 14 N -0.334 5.334 15 C 0.326 3.674 16 O -0.424 6.424 17 C -0.194 4.194 18 H 0.143 0.857 19 C -0.180 4.180 20 C -0.108 4.108 21 H 0.146 0.854 22 C -0.031 4.031 23 C -0.148 4.148 24 C -0.119 4.119 25 C -0.170 4.170 26 C 0.062 3.938 27 O -0.311 6.311 28 C -0.153 4.153 29 C 0.007 3.993 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.247 0.753 43 H 0.149 0.851 44 H 0.104 0.896 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 25.000 -4.496 -0.149 25.402 hybrid contribution 0.162 1.729 -0.153 1.743 sum 25.162 -2.767 -0.302 25.315 Atomic orbital electron populations 1.69895 1.06261 1.27014 1.50453 1.24984 0.94686 0.99003 0.94354 0.86825 0.79929 0.83579 0.77772 1.20568 1.22482 1.19155 1.20906 0.88282 0.94747 1.51363 0.90574 1.19468 0.96879 0.91429 0.93648 0.95213 1.21992 0.91980 1.00748 1.01281 1.22015 0.98764 0.95525 1.01556 1.21717 0.97359 0.92532 0.89589 1.48238 1.08289 1.49844 1.26982 1.19477 0.87209 0.78988 0.81739 1.90677 1.75075 1.44112 1.32572 1.22416 0.92462 0.98559 1.05964 0.85696 1.23126 1.01973 0.95843 0.97069 1.21093 0.93729 1.02002 0.93986 0.85370 1.19020 0.93858 0.97372 0.92882 1.21110 0.93389 1.00563 0.99703 1.20996 0.97037 0.98219 0.95640 1.21420 0.99855 1.02759 0.92984 1.18445 0.92704 0.99042 0.83562 1.84817 1.87034 1.35291 1.23945 1.21313 0.96684 1.01019 0.96263 1.21797 0.75577 0.99480 1.02471 0.92573 0.91881 0.93198 0.91703 0.92146 0.90491 0.91367 0.87599 0.87485 0.85468 0.85505 0.85539 0.75270 0.85078 0.89580 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 2 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 3 Si 0.89 21.66 24.39 -169.99 -4.15 17.52 16 4 H -0.28 -6.52 6.86 56.52 0.39 -6.13 16 5 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 7 C -0.51 -14.18 9.15 -34.44 -0.31 -14.50 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C 0.01 0.12 1.84 -91.65 -0.17 -0.05 16 10 H 0.03 0.73 7.20 -51.93 -0.37 0.36 16 11 C -0.12 -2.46 4.66 -26.69 -0.12 -2.59 16 12 C -0.14 -2.17 6.08 -26.63 -0.16 -2.33 16 13 C 0.11 1.50 6.35 -3.73 -0.02 1.48 16 14 N -0.60 -10.22 2.97 -172.78 -0.51 -10.74 16 15 C 0.54 9.02 7.48 -10.99 -0.08 8.94 16 16 O -0.55 -11.16 15.67 5.55 0.09 -11.07 16 17 C -0.17 -2.08 4.75 -91.78 -0.44 -2.52 16 18 H 0.13 1.31 6.57 -51.93 -0.34 0.97 16 19 C -0.14 -1.37 9.56 -26.70 -0.26 -1.62 16 20 C -0.09 -1.01 5.56 -91.74 -0.51 -1.52 16 21 H 0.13 1.66 7.67 -51.92 -0.40 1.26 16 22 C -0.03 -0.32 5.61 -104.64 -0.59 -0.91 16 23 C -0.13 -1.12 9.30 -39.56 -0.37 -1.49 16 24 C -0.10 -0.80 10.04 -39.61 -0.40 -1.20 16 25 C -0.15 -1.32 9.99 -39.43 -0.39 -1.71 16 26 C 0.11 1.07 6.70 -39.22 -0.26 0.80 16 27 O -0.50 -4.56 13.50 -19.44 -0.26 -4.82 16 28 C -0.13 -1.45 9.68 -39.43 -0.38 -1.83 16 29 C 0.13 2.61 5.66 -3.70 -0.02 2.59 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.08 3.25 -51.93 -0.17 0.91 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.80 5.51 -51.93 -0.29 0.52 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.11 0.75 6.18 -51.93 -0.32 0.42 16 39 H 0.13 0.86 6.01 -52.49 -0.32 0.54 16 40 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.39 1.77 9.06 45.56 0.41 2.18 16 43 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.09 1.92 7.00 -51.93 -0.36 1.56 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 356.62 15.07 5.37 5.37 Total: -1.00 -33.71 356.62 -8.83 -42.54 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.56 Total: 4.17 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -4.59 Total: -16.52 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.26 Total: -37.19 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.18 Total: -15.89 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.15 Total: 17.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.71 -8.83 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.207 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds