Wall clock time and date at job start Tue Mar 31 2020 10:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99887 * 2 1 4 4 H 1.48494 * 109.47238 * 269.99858 * 3 2 1 5 5 H 1.48500 * 109.47158 * 30.00205 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99912 * 3 2 1 7 7 C 1.37877 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99530 * 179.97438 * 7 2 1 10 10 H 1.09005 * 109.49881 * 60.07341 * 9 7 2 11 11 C 1.53039 * 109.50284 * 300.00247 * 9 7 2 12 12 C 1.53046 * 109.52798 * 178.69012 * 11 9 7 13 13 C 1.53159 * 109.32667 * 61.37318 * 12 11 9 14 14 N 1.46928 * 108.76987 * 305.35456 * 13 12 11 15 15 C 1.34773 * 120.63179 * 233.59029 * 14 13 12 16 16 O 1.21283 * 119.99742 * 180.02562 * 15 14 13 17 17 C 1.50697 * 120.00193 * 0.02562 * 15 14 13 18 18 H 1.09003 * 115.54987 * 34.41658 * 17 15 14 19 19 C 1.52995 * 117.50363 * 248.75086 * 17 15 14 20 20 C 1.52991 * 117.50309 * 180.08948 * 17 15 14 21 21 H 1.09008 * 117.49784 * 359.97438 * 20 17 15 22 22 C 1.50702 * 117.50145 * 214.98358 * 20 17 15 23 23 C 1.38284 * 119.97031 * 299.99819 * 22 20 17 24 24 C 1.38246 * 120.10980 * 180.02562 * 23 22 20 25 25 C 1.38161 * 120.05806 * 359.95245 * 24 23 22 26 26 C 1.38715 * 119.94323 * 0.02618 * 25 24 23 27 27 O 1.35904 * 120.05307 * 180.02562 * 26 25 24 28 28 C 1.38128 * 119.97389 * 119.72050 * 22 20 17 29 29 C 1.46931 * 118.73792 * 53.61250 * 14 13 12 30 30 H 0.97002 * 119.99938 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46050 * 298.70598 * 11 9 7 32 32 H 1.09004 * 109.46034 * 58.67814 * 11 9 7 33 33 H 1.08996 * 109.49379 * 181.30938 * 12 11 9 34 34 H 1.08994 * 109.49581 * 301.40708 * 12 11 9 35 35 H 1.08999 * 109.58991 * 185.56748 * 13 12 11 36 36 H 1.08998 * 109.59395 * 65.13869 * 13 12 11 37 37 H 1.09006 * 117.49773 * 359.97438 * 19 17 15 38 38 H 1.09004 * 117.50234 * 144.99132 * 19 17 15 39 39 H 1.08001 * 119.94390 * 359.97409 * 23 22 20 40 40 H 1.08007 * 119.97040 * 179.97438 * 24 23 22 41 41 H 1.08001 * 120.02834 * 180.02562 * 25 24 23 42 42 H 0.96698 * 113.99595 * 90.00313 * 27 26 25 43 43 H 1.07999 * 120.02574 * 0.02562 * 28 22 20 44 44 H 1.08998 * 109.58425 * 186.61021 * 29 14 13 45 45 H 1.08999 * 109.58795 * 66.17471 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8757 -0.6808 0.8900 11 6 4.0219 -0.4735 -1.2500 12 6 5.5520 -0.4445 -1.2348 13 6 6.0864 -1.8797 -1.2524 14 7 5.4861 -2.6214 -0.1351 15 6 6.2629 -3.2743 0.7519 16 8 5.7551 -3.8833 1.6697 17 6 7.7623 -3.2476 0.6034 18 1 8.1794 -2.3204 0.2103 19 6 8.4574 -4.5545 0.2167 20 6 8.5887 -4.0097 1.6411 21 1 8.0479 -4.5302 2.4316 22 6 9.9172 -3.4214 2.0412 23 6 10.9007 -3.2251 1.0891 24 6 12.1206 -2.6861 1.4531 25 6 12.3597 -2.3412 2.7694 26 6 11.3746 -2.5367 3.7263 27 8 11.6072 -2.1977 5.0217 28 6 10.1494 -3.0733 3.3576 29 6 4.0228 -2.6382 -0.0034 30 1 -0.4850 0.8401 -0.0004 31 1 3.6775 -1.0012 -2.1394 32 1 3.6395 0.5472 -1.2624 33 1 5.9144 0.0891 -2.1135 34 1 5.8973 0.0614 -0.3333 35 1 7.1707 -1.8673 -1.1421 36 1 5.8183 -2.3581 -2.1944 37 1 7.8301 -5.4339 0.0701 38 1 9.3316 -4.4872 -0.4308 39 1 10.7157 -3.4942 0.0597 40 1 12.8873 -2.5342 0.7077 41 1 13.3127 -1.9198 3.0532 42 1 11.3618 -1.2883 5.2404 43 1 9.3795 -3.2230 4.1000 44 1 3.7456 -3.1261 0.9310 45 1 3.5865 -3.1783 -0.8436 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597900798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:43 Heat of formation + Delta-G solvation = -49.338864 kcal Electronic energy + Delta-G solvation = -25870.347641 eV Core-core repulsion = 22238.599906 eV Total energy + Delta-G solvation = -3631.747735 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.57045 -40.65596 -39.04232 -38.09956 -36.59966 -35.35390 -33.52702 -32.29864 -31.83765 -30.47715 -27.71147 -26.61988 -24.96295 -24.45839 -23.42798 -23.20147 -21.73074 -21.22447 -19.82127 -19.03588 -18.84033 -18.30874 -17.46631 -17.11695 -16.76574 -16.42563 -16.11795 -16.02942 -15.44231 -15.38749 -15.12711 -14.91164 -14.55549 -14.40094 -14.08858 -13.85587 -13.63436 -13.50650 -13.10466 -13.02261 -12.86626 -12.69745 -12.52154 -12.42413 -12.11674 -11.92818 -11.69888 -11.57285 -11.51687 -11.33305 -11.26242 -11.11494 -10.70811 -10.69049 -9.74750 -9.57100 -9.45562 -8.33982 -6.39316 0.25446 0.35645 1.25890 1.33983 1.44071 1.48600 2.01135 2.29099 2.56805 2.96300 3.00869 3.27504 3.45679 3.67775 3.77575 3.91705 3.99466 4.04637 4.06431 4.18628 4.22450 4.23806 4.30537 4.36880 4.51861 4.64958 4.65707 4.72439 4.76569 4.86956 4.93454 4.96846 5.00897 5.02715 5.11541 5.11763 5.13857 5.36563 5.41930 5.47763 5.49525 5.63111 5.63496 5.72962 5.92738 6.23252 6.50905 6.67073 6.82785 7.17522 7.26552 8.82849 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.002973 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.279527 B = 9416.482837 C = 9772.357296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.254 1.254 5 H -0.301 1.301 6 H -0.254 1.254 7 C -0.524 4.524 8 H 0.032 0.968 9 C 0.009 3.991 10 H 0.011 0.989 11 C -0.122 4.122 12 C -0.135 4.135 13 C 0.107 3.893 14 N -0.604 5.604 15 C 0.530 3.470 16 O -0.597 6.597 17 C -0.175 4.175 18 H 0.154 0.846 19 C -0.115 4.115 20 C -0.098 4.098 21 H 0.097 0.903 22 C -0.040 4.040 23 C -0.127 4.127 24 C -0.095 4.095 25 C -0.156 4.156 26 C 0.095 3.905 27 O -0.515 6.515 28 C -0.161 4.161 29 C 0.138 3.862 30 H 0.267 0.733 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.106 0.894 34 H 0.055 0.945 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.148 0.852 39 H 0.156 0.844 40 H 0.159 0.841 41 H 0.143 0.857 42 H 0.408 0.592 43 H 0.114 0.886 44 H 0.052 0.948 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.165 -2.342 -3.426 30.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.185 4.185 3 Si 0.783 3.217 4 H -0.180 1.180 5 H -0.229 1.229 6 H -0.178 1.178 7 C -0.562 4.562 8 H 0.051 0.949 9 C -0.011 4.011 10 H 0.029 0.971 11 C -0.160 4.160 12 C -0.172 4.172 13 C -0.014 4.014 14 N -0.335 5.335 15 C 0.320 3.680 16 O -0.479 6.479 17 C -0.195 4.195 18 H 0.172 0.828 19 C -0.151 4.151 20 C -0.117 4.117 21 H 0.115 0.885 22 C -0.040 4.040 23 C -0.144 4.144 24 C -0.113 4.113 25 C -0.174 4.174 26 C 0.051 3.949 27 O -0.328 6.328 28 C -0.179 4.179 29 C 0.015 3.985 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.124 0.876 34 H 0.074 0.926 35 H 0.139 0.861 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.166 0.834 39 H 0.173 0.827 40 H 0.177 0.823 41 H 0.161 0.839 42 H 0.267 0.733 43 H 0.132 0.868 44 H 0.070 0.930 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 29.938 -3.126 -2.922 30.243 hybrid contribution -1.428 1.190 0.797 2.022 sum 28.510 -1.936 -2.125 28.655 Atomic orbital electron populations 1.70054 1.08267 1.28172 1.52362 1.25892 0.95463 1.03148 0.93962 0.85736 0.78674 0.78263 0.79066 1.17993 1.22943 1.17845 1.21233 0.91135 0.93192 1.50658 0.94922 1.19339 0.93688 0.93290 0.94756 0.97122 1.21871 0.95958 0.99122 0.99037 1.22005 0.94597 0.97342 1.03304 1.22077 0.99600 0.90836 0.88858 1.48291 1.06469 1.50421 1.28289 1.20398 0.89372 0.77701 0.80546 1.90657 1.76469 1.46183 1.34609 1.22356 0.88546 1.01048 1.07575 0.82841 1.23309 1.02176 0.93821 0.95843 1.20974 0.94050 1.02361 0.94268 0.88483 1.18987 0.93844 0.98135 0.93077 1.21391 0.92842 0.99763 1.00431 1.21392 0.97427 0.96666 0.95813 1.21695 1.00021 1.02454 0.93237 1.18610 0.92839 0.99405 0.84096 1.84763 1.87090 1.36945 1.24009 1.21368 0.97119 1.02728 0.96730 1.21316 0.78766 0.97578 1.00803 0.92424 0.91604 0.94509 0.87582 0.92617 0.86071 0.89426 0.88381 0.83385 0.82670 0.82316 0.83893 0.73310 0.86836 0.92981 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 2 C 0.01 0.74 5.45 84.65 0.46 1.20 16 3 Si 0.96 45.02 24.39 68.60 1.67 46.70 16 4 H -0.25 -10.95 6.86 99.48 0.68 -10.27 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.25 -11.33 6.53 99.48 0.65 -10.68 16 7 C -0.52 -30.35 9.15 25.60 0.23 -30.12 16 8 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 9 C 0.01 0.42 1.84 -11.46 -0.02 0.39 16 10 H 0.01 0.54 7.20 -2.38 -0.02 0.52 16 11 C -0.12 -4.67 4.66 30.62 0.14 -4.53 16 12 C -0.13 -3.56 6.08 30.66 0.19 -3.37 16 13 C 0.11 2.41 6.35 86.35 0.55 2.96 16 14 N -0.60 -19.76 2.97 -818.95 -2.43 -22.19 16 15 C 0.53 17.47 7.48 87.66 0.66 18.12 16 16 O -0.60 -25.63 15.67 -3.04 -0.05 -25.68 16 17 C -0.17 -3.69 4.75 -11.55 -0.05 -3.75 16 18 H 0.15 2.37 6.57 -2.39 -0.02 2.35 16 19 C -0.11 -1.78 9.56 30.61 0.29 -1.48 16 20 C -0.10 -2.09 5.56 -11.52 -0.06 -2.15 16 21 H 0.10 2.67 7.67 -2.38 -0.02 2.65 16 22 C -0.04 -0.76 5.61 -19.88 -0.11 -0.87 16 23 C -0.13 -1.62 9.30 22.28 0.21 -1.41 16 24 C -0.10 -1.08 10.04 22.25 0.22 -0.85 16 25 C -0.16 -2.24 9.99 22.37 0.22 -2.02 16 26 C 0.09 1.79 6.70 22.51 0.15 1.94 16 27 O -0.51 -9.13 13.50 -92.47 -1.25 -10.38 16 28 C -0.16 -3.46 9.68 22.37 0.22 -3.24 16 29 C 0.14 5.85 5.66 86.36 0.49 6.34 16 30 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.04 1.50 3.25 -2.39 -0.01 1.49 16 33 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 35 H 0.12 1.72 5.51 -2.39 -0.01 1.71 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.15 1.11 6.18 -2.38 -0.01 1.09 16 39 H 0.16 1.04 6.01 -2.91 -0.02 1.03 16 40 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 41 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 42 H 0.41 3.49 9.06 -74.06 -0.67 2.82 16 43 H 0.11 2.68 8.06 -2.91 -0.02 2.65 16 44 H 0.05 2.52 7.00 -2.39 -0.02 2.50 16 45 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -80.74 356.62 2.29 -78.45 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.27 Total: 15.56 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: 3.78 Total: -22.83 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -2.13 Total: -81.82 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -1.30 Total: -36.06 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.67 Total: 46.70 kcal Total: -80.74 2.29 -78.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.111 kcal (2) G-P(sol) polarization free energy of solvation -80.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds