Wall clock time and date at job start Tue Mar 31 2020 12:42:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52268 * 1
3 3 C 1.52978 * 110.58506 * 2 1
4 4 C 1.54031 * 111.57637 * 237.29601 * 2 1 3
5 5 N 1.47571 * 105.81597 * 206.92156 * 4 2 1
6 6 C 1.35352 * 124.68513 * 197.98944 * 5 4 2
7 7 O 1.21605 * 120.00673 * 174.86223 * 6 5 4
8 8 C 1.47434 * 119.99579 * 354.86037 * 6 5 4
9 9 C 1.39222 * 120.28542 * 319.84112 * 8 6 5
10 10 C 1.38219 * 120.09749 * 180.02562 * 9 8 6
11 11 C 1.38832 * 120.67031 * 0.02693 * 10 9 8
12 12 C 1.37597 * 120.57205 * 359.97438 * 11 10 9
13 13 C 1.40701 * 119.87912 * 359.68177 * 12 11 10
14 14 C 1.40892 * 120.32649 * 180.29252 * 13 12 11
15 15 H 1.08006 * 120.00095 * 151.99130 * 14 13 12
16 16 C 1.40275 * 120.00119 * 332.00644 * 14 13 12
17 17 N 1.30630 * 120.00095 * 162.01237 * 16 14 13
18 18 Si 1.86793 * 119.99735 * 342.00464 * 16 14 13
19 19 H 1.48507 * 109.47015 * 95.20499 * 18 16 14
20 20 H 1.48506 * 109.47402 * 215.20004 * 18 16 14
21 21 H 1.48500 * 109.47481 * 335.20414 * 18 16 14
22 22 C 1.46516 * 109.13656 * 17.45233 * 5 4 2
23 23 H 1.08881 * 111.69796 * 243.66245 * 22 5 4
24 24 C 1.53519 * 111.89640 * 117.44440 * 22 5 4
25 25 O 1.43152 * 108.06952 * 264.50922 * 24 22 5
26 26 C 1.43508 * 109.62747 * 3.16324 * 25 24 22
27 27 C 1.54119 * 106.00878 * 335.72800 * 26 25 24
28 28 H 1.07683 * 114.30399 * 271.80984 * 27 26 25
29 29 H 1.09007 * 109.46764 * 296.73553 * 1 2 3
30 30 H 1.09002 * 109.47290 * 56.73276 * 1 2 3
31 31 H 1.08999 * 109.47316 * 176.74195 * 1 2 3
32 32 H 1.08998 * 109.47073 * 184.12097 * 3 2 1
33 33 H 1.09001 * 109.46896 * 304.12244 * 3 2 1
34 34 H 1.08999 * 109.46926 * 64.11533 * 3 2 1
35 35 H 1.09062 * 109.87037 * 325.42955 * 4 2 1
36 36 H 1.08803 * 110.38793 * 87.56011 * 4 2 1
37 37 H 1.08006 * 119.95194 * 359.97438 * 9 8 6
38 38 H 1.07996 * 119.66573 * 179.97438 * 10 9 8
39 39 H 1.08005 * 119.71173 * 179.97438 * 11 10 9
40 40 H 1.08000 * 120.05594 * 180.02562 * 12 11 10
41 41 H 0.96999 * 119.99952 * 179.97438 * 17 16 14
42 42 H 1.08617 * 111.08622 * 24.71678 * 24 22 5
43 43 H 1.09352 * 109.34811 * 146.07934 * 24 22 5
44 44 H 1.08129 * 109.82276 * 215.68666 * 26 25 24
45 45 H 1.08920 * 107.86529 * 93.87286 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5227 0.0000 0.0000
3 6 2.0605 1.4321 0.0000
4 6 2.0891 -0.7739 -1.2053
5 7 3.4143 -1.2654 -0.7809
6 6 4.3860 -1.6860 -1.6241
7 8 5.4809 -1.9865 -1.1885
8 6 4.1169 -1.7801 -3.0706
9 6 2.8929 -2.2613 -3.5272
10 6 2.6450 -2.3483 -4.8842
11 6 3.6074 -1.9598 -5.8063
12 6 4.8265 -1.4803 -5.3855
13 6 5.1013 -1.3749 -4.0096
14 6 6.3442 -0.8794 -3.5683
15 1 6.4182 -0.3799 -2.6135
16 6 7.4855 -1.0345 -4.3690
17 7 8.5404 -0.2950 -4.1528
18 14 7.4967 -2.2984 -5.7443
19 1 7.1277 -1.6411 -7.0238
20 1 8.8546 -2.8876 -5.8641
21 1 6.5168 -3.3715 -5.4385
22 6 3.5020 -1.2092 0.6805
23 1 4.2728 -0.5149 1.0111
24 6 3.6874 -2.6029 1.2969
25 8 2.3985 -3.0939 1.6803
26 6 1.3883 -2.1523 1.2899
27 6 2.0943 -0.7854 1.1973
28 1 2.1181 -0.2353 2.1227
29 1 -0.3633 0.4624 0.9179
30 1 -0.3634 0.5637 -0.8593
31 1 -0.3634 -1.0260 -0.0584
32 1 3.1478 1.4118 -0.0738
33 1 1.6486 1.9749 -0.8508
34 1 1.7683 1.9299 0.9246
35 1 1.4400 -1.6177 -1.4423
36 1 2.1881 -0.1156 -2.0659
37 1 2.1363 -2.5679 -2.8201
38 1 1.6932 -2.7230 -5.2307
39 1 3.3974 -2.0347 -6.8631
40 1 5.5690 -1.1800 -6.1100
41 1 9.3297 -0.4025 -4.7062
42 1 4.1404 -3.2876 0.5858
43 1 4.3163 -2.5242 2.1880
44 1 0.5997 -2.1328 2.0295
45 1 1.0132 -2.4509 0.3119
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601620453.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:42:40
Heat of formation + Delta-G solvation = -53.820444 kcal
Electronic energy + Delta-G solvation = -27773.371094 eV
Core-core repulsion = 24141.429023 eV
Total energy + Delta-G solvation = -3631.942071 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.20348 -38.57964 -36.94585 -36.69505 -33.85686 -33.33452 -30.96482 -30.56866
-29.48730 -28.77994 -27.35409 -26.09836 -25.25704 -22.94949 -22.73356 -21.62268
-20.63704 -19.12049 -18.77431 -17.48149 -17.04593 -16.24625 -15.82497 -15.51934
-15.12484 -14.82588 -14.47989 -14.29507 -14.03575 -13.88699 -13.76913 -13.24354
-12.91013 -12.82679 -12.55522 -12.48200 -12.29644 -12.14597 -11.86650 -11.84374
-11.68508 -11.51492 -11.32656 -10.95158 -10.92818 -10.74131 -10.69762 -10.53283
-10.34453 -10.07335 -9.77655 -9.43549 -9.25583 -8.79776 -8.15871 -7.81098
-7.71781 -7.07058 -4.56559 2.16844 2.58949 3.05087 3.15719 3.28457
3.44979 3.76686 3.91142 3.94063 4.10619 4.37870 4.47289 4.68506
4.94931 5.01677 5.07550 5.22602 5.29990 5.34477 5.42976 5.52587
5.54734 5.64985 5.72039 5.75151 5.78006 5.80644 5.90652 5.97395
5.99249 6.04097 6.06649 6.08961 6.16214 6.28778 6.31048 6.51468
6.75598 6.82639 7.04048 7.04758 7.22736 7.42651 7.56450 7.72027
7.97572 8.12300 8.28732 8.54889 8.67865 9.11684 9.92926
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.017347 B = 0.004779 C = 0.004424
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1613.698782 B = 5857.861332 C = 6328.227086
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.070 4.070
3 C -0.138 4.138
4 C 0.115 3.885
5 N -0.622 5.622
6 C 0.594 3.406
7 O -0.525 6.525
8 C -0.247 4.247
9 C -0.040 4.040
10 C -0.260 4.260
11 C -0.059 4.059
12 C -0.237 4.237
13 C 0.121 3.879
14 C -0.401 4.401
15 H 0.098 0.902
16 C 0.083 3.917
17 N -0.787 5.787
18 Si 0.916 3.084
19 H -0.269 1.269
20 H -0.289 1.289
21 H -0.241 1.241
22 C 0.116 3.884
23 H 0.091 0.909
24 C 0.046 3.954
25 O -0.387 6.387
26 C 0.059 3.941
27 C -0.122 4.122
28 H 0.108 0.892
29 H 0.061 0.939
30 H 0.063 0.937
31 H 0.060 0.940
32 H 0.061 0.939
33 H 0.061 0.939
34 H 0.056 0.944
35 H 0.063 0.937
36 H 0.082 0.918
37 H 0.098 0.902
38 H 0.096 0.904
39 H 0.095 0.905
40 H 0.103 0.897
41 H 0.289 0.711
42 H 0.080 0.920
43 H 0.072 0.928
44 H 0.084 0.916
45 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.755 1.625 6.651 15.364
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.071 4.071
3 C -0.196 4.196
4 C -0.008 4.008
5 N -0.359 5.359
6 C 0.388 3.612
7 O -0.401 6.401
8 C -0.251 4.251
9 C -0.059 4.059
10 C -0.280 4.280
11 C -0.078 4.078
12 C -0.256 4.256
13 C 0.116 3.884
14 C -0.428 4.428
15 H 0.116 0.884
16 C -0.139 4.139
17 N -0.409 5.409
18 Si 0.742 3.258
19 H -0.195 1.195
20 H -0.216 1.216
21 H -0.164 1.164
22 C 0.012 3.988
23 H 0.109 0.891
24 C -0.032 4.032
25 O -0.306 6.306
26 C -0.018 4.018
27 C -0.141 4.141
28 H 0.127 0.873
29 H 0.080 0.920
30 H 0.082 0.918
31 H 0.079 0.921
32 H 0.080 0.920
33 H 0.080 0.920
34 H 0.075 0.925
35 H 0.081 0.919
36 H 0.100 0.900
37 H 0.116 0.884
38 H 0.114 0.886
39 H 0.114 0.886
40 H 0.121 0.879
41 H 0.100 0.900
42 H 0.098 0.902
43 H 0.091 0.909
44 H 0.103 0.897
45 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -12.791 1.335 6.926 14.606
hybrid contribution 0.243 -0.188 -0.740 0.801
sum -12.548 1.147 6.186 14.037
Atomic orbital electron populations
1.21632 0.93036 1.02367 1.02404 1.21248 0.95956 0.95900 0.94005
1.21812 1.01828 0.94115 1.01802 1.22288 0.84278 0.97353 0.96907
1.48544 1.15492 1.67412 1.04461 1.18326 0.81852 0.75201 0.85850
1.90736 1.22456 1.48884 1.78016 1.19213 0.98116 1.17473 0.90329
1.20835 0.94119 0.95807 0.95125 1.20238 0.99950 1.14967 0.92820
1.20705 0.93684 0.95857 0.97541 1.21004 0.97803 1.11504 0.95315
1.17408 0.92607 0.88070 0.90310 1.19655 0.90696 1.27866 1.04576
0.88445 1.26338 0.94965 0.95270 0.97318 1.69597 1.04197 1.31597
1.35530 0.86268 0.77733 0.82119 0.79671 1.19521 1.21605 1.16415
1.22459 0.97314 0.96445 0.82611 0.89131 1.23304 0.85268 0.95112
0.99491 1.88414 1.15531 1.44747 1.81929 1.23237 0.91462 0.86828
1.00231 1.23445 0.94445 0.97102 0.99092 0.87341 0.92043 0.91829
0.92081 0.91994 0.92033 0.92530 0.91888 0.89954 0.88420 0.88606
0.88646 0.87891 0.90037 0.90221 0.90941 0.89738 0.91872
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.13 8.25 36.78 0.30 -0.82 16
2 C -0.07 -0.76 0.73 -153.74 -0.11 -0.87 16
3 C -0.14 -1.48 8.45 37.15 0.31 -1.17 16
4 C 0.11 1.63 3.61 -2.92 -0.01 1.62 16
5 N -0.62 -11.04 3.13 -163.78 -0.51 -11.55 16
6 C 0.59 13.54 6.56 -12.26 -0.08 13.46 16
7 O -0.53 -13.84 15.00 5.27 0.08 -13.77 16
8 C -0.25 -5.78 5.38 -104.37 -0.56 -6.34 16
9 C -0.04 -0.82 8.32 -39.22 -0.33 -1.14 16
10 C -0.26 -5.13 10.03 -39.37 -0.39 -5.53 16
11 C -0.06 -1.23 10.01 -39.60 -0.40 -1.63 16
12 C -0.24 -5.60 7.13 -38.89 -0.28 -5.87 16
13 C 0.12 3.08 5.18 -106.54 -0.55 2.53 16
14 C -0.40 -11.11 8.31 -37.81 -0.31 -11.43 16
15 H 0.10 2.95 6.93 -52.48 -0.36 2.59 16
16 C 0.08 2.20 5.42 -17.30 -0.09 2.10 16
17 N -0.79 -21.00 13.92 55.56 0.77 -20.23 16
18 Si 0.92 20.95 24.46 -169.99 -4.16 16.79 16
19 H -0.27 -5.80 6.69 56.52 0.38 -5.42 16
20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16
21 H -0.24 -5.74 6.80 56.52 0.38 -5.35 16
22 C 0.12 1.77 3.19 -66.14 -0.21 1.56 16
23 H 0.09 1.41 8.13 -52.00 -0.42 0.99 16
24 C 0.05 0.72 7.31 37.43 0.27 0.99 16
25 O -0.39 -5.88 11.37 -35.23 -0.40 -6.28 16
26 C 0.06 0.69 5.93 37.74 0.22 0.92 16
27 C -0.12 -1.38 3.53 -87.91 -0.31 -1.69 16
28 H 0.11 1.03 8.03 -52.66 -0.42 0.61 16
29 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16
30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
31 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16
32 H 0.06 0.81 7.78 -51.93 -0.40 0.40 16
33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
35 H 0.06 0.85 5.39 -51.89 -0.28 0.57 16
36 H 0.08 1.27 7.50 -52.04 -0.39 0.88 16
37 H 0.10 1.73 5.90 -52.48 -0.31 1.42 16
38 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16
39 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16
40 H 0.10 2.40 4.47 -52.49 -0.23 2.17 16
41 H 0.29 6.91 8.29 -40.82 -0.34 6.57 16
42 H 0.08 1.49 7.28 -52.14 -0.38 1.11 16
43 H 0.07 1.03 8.17 -51.73 -0.42 0.61 16
44 H 0.08 0.80 8.07 -52.42 -0.42 0.38 16
45 H 0.06 0.77 5.55 -51.97 -0.29 0.48 16
LS Contribution 342.55 15.07 5.16 5.16
Total: -1.00 -30.18 342.55 -7.98 -38.16
By element:
Atomic # 1 Polarization: 11.41 SS G_CDS: -6.39 Total: 5.02 kcal
Atomic # 6 Polarization: -10.78 SS G_CDS: -2.53 Total: -13.31 kcal
Atomic # 7 Polarization: -32.04 SS G_CDS: 0.26 Total: -31.78 kcal
Atomic # 8 Polarization: -19.73 SS G_CDS: -0.32 Total: -20.05 kcal
Atomic # 14 Polarization: 20.95 SS G_CDS: -4.16 Total: 16.79 kcal
Total LS contribution 5.16 Total: 5.16 kcal
Total: -30.18 -7.98 -38.16 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601620453.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.661 kcal
(2) G-P(sol) polarization free energy of solvation -30.183 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.844 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.820 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds