Wall clock time and date at job start Tue Mar 31 2020 12:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52268 * 1 3 3 C 1.52978 * 110.58506 * 2 1 4 4 C 1.54031 * 111.57637 * 237.29601 * 2 1 3 5 5 N 1.47571 * 105.81597 * 206.92156 * 4 2 1 6 6 C 1.35352 * 124.68513 * 197.98944 * 5 4 2 7 7 O 1.21605 * 120.00673 * 174.86223 * 6 5 4 8 8 C 1.47434 * 119.99579 * 354.86037 * 6 5 4 9 9 C 1.39222 * 120.28542 * 319.84112 * 8 6 5 10 10 C 1.38219 * 120.09749 * 180.02562 * 9 8 6 11 11 C 1.38832 * 120.67031 * 0.02693 * 10 9 8 12 12 C 1.37597 * 120.57205 * 359.97438 * 11 10 9 13 13 C 1.40701 * 119.87912 * 359.68177 * 12 11 10 14 14 C 1.40892 * 120.32649 * 180.29252 * 13 12 11 15 15 H 1.08006 * 120.00095 * 151.99130 * 14 13 12 16 16 C 1.40275 * 120.00119 * 332.00644 * 14 13 12 17 17 N 1.30630 * 120.00095 * 162.01237 * 16 14 13 18 18 Si 1.86793 * 119.99735 * 342.00464 * 16 14 13 19 19 H 1.48507 * 109.47015 * 95.20499 * 18 16 14 20 20 H 1.48506 * 109.47402 * 215.20004 * 18 16 14 21 21 H 1.48500 * 109.47481 * 335.20414 * 18 16 14 22 22 C 1.46516 * 109.13656 * 17.45233 * 5 4 2 23 23 H 1.08881 * 111.69796 * 243.66245 * 22 5 4 24 24 C 1.53519 * 111.89640 * 117.44440 * 22 5 4 25 25 O 1.43152 * 108.06952 * 264.50922 * 24 22 5 26 26 C 1.43508 * 109.62747 * 3.16324 * 25 24 22 27 27 C 1.54119 * 106.00878 * 335.72800 * 26 25 24 28 28 H 1.07683 * 114.30399 * 271.80984 * 27 26 25 29 29 H 1.09007 * 109.46764 * 296.73553 * 1 2 3 30 30 H 1.09002 * 109.47290 * 56.73276 * 1 2 3 31 31 H 1.08999 * 109.47316 * 176.74195 * 1 2 3 32 32 H 1.08998 * 109.47073 * 184.12097 * 3 2 1 33 33 H 1.09001 * 109.46896 * 304.12244 * 3 2 1 34 34 H 1.08999 * 109.46926 * 64.11533 * 3 2 1 35 35 H 1.09062 * 109.87037 * 325.42955 * 4 2 1 36 36 H 1.08803 * 110.38793 * 87.56011 * 4 2 1 37 37 H 1.08006 * 119.95194 * 359.97438 * 9 8 6 38 38 H 1.07996 * 119.66573 * 179.97438 * 10 9 8 39 39 H 1.08005 * 119.71173 * 179.97438 * 11 10 9 40 40 H 1.08000 * 120.05594 * 180.02562 * 12 11 10 41 41 H 0.96999 * 119.99952 * 179.97438 * 17 16 14 42 42 H 1.08617 * 111.08622 * 24.71678 * 24 22 5 43 43 H 1.09352 * 109.34811 * 146.07934 * 24 22 5 44 44 H 1.08129 * 109.82276 * 215.68666 * 26 25 24 45 45 H 1.08920 * 107.86529 * 93.87286 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5227 0.0000 0.0000 3 6 2.0605 1.4321 0.0000 4 6 2.0891 -0.7739 -1.2053 5 7 3.4143 -1.2654 -0.7809 6 6 4.3860 -1.6860 -1.6241 7 8 5.4809 -1.9865 -1.1885 8 6 4.1169 -1.7801 -3.0706 9 6 2.8929 -2.2613 -3.5272 10 6 2.6450 -2.3483 -4.8842 11 6 3.6074 -1.9598 -5.8063 12 6 4.8265 -1.4803 -5.3855 13 6 5.1013 -1.3749 -4.0096 14 6 6.3442 -0.8794 -3.5683 15 1 6.4182 -0.3799 -2.6135 16 6 7.4855 -1.0345 -4.3690 17 7 8.5404 -0.2950 -4.1528 18 14 7.4967 -2.2984 -5.7443 19 1 7.1277 -1.6411 -7.0238 20 1 8.8546 -2.8876 -5.8641 21 1 6.5168 -3.3715 -5.4385 22 6 3.5020 -1.2092 0.6805 23 1 4.2728 -0.5149 1.0111 24 6 3.6874 -2.6029 1.2969 25 8 2.3985 -3.0939 1.6803 26 6 1.3883 -2.1523 1.2899 27 6 2.0943 -0.7854 1.1973 28 1 2.1181 -0.2353 2.1227 29 1 -0.3633 0.4624 0.9179 30 1 -0.3634 0.5637 -0.8593 31 1 -0.3634 -1.0260 -0.0584 32 1 3.1478 1.4118 -0.0738 33 1 1.6486 1.9749 -0.8508 34 1 1.7683 1.9299 0.9246 35 1 1.4400 -1.6177 -1.4423 36 1 2.1881 -0.1156 -2.0659 37 1 2.1363 -2.5679 -2.8201 38 1 1.6932 -2.7230 -5.2307 39 1 3.3974 -2.0347 -6.8631 40 1 5.5690 -1.1800 -6.1100 41 1 9.3297 -0.4025 -4.7062 42 1 4.1404 -3.2876 0.5858 43 1 4.3163 -2.5242 2.1880 44 1 0.5997 -2.1328 2.0295 45 1 1.0132 -2.4509 0.3119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601620453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:40 Heat of formation + Delta-G solvation = -53.820444 kcal Electronic energy + Delta-G solvation = -27773.371094 eV Core-core repulsion = 24141.429023 eV Total energy + Delta-G solvation = -3631.942071 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.20348 -38.57964 -36.94585 -36.69505 -33.85686 -33.33452 -30.96482 -30.56866 -29.48730 -28.77994 -27.35409 -26.09836 -25.25704 -22.94949 -22.73356 -21.62268 -20.63704 -19.12049 -18.77431 -17.48149 -17.04593 -16.24625 -15.82497 -15.51934 -15.12484 -14.82588 -14.47989 -14.29507 -14.03575 -13.88699 -13.76913 -13.24354 -12.91013 -12.82679 -12.55522 -12.48200 -12.29644 -12.14597 -11.86650 -11.84374 -11.68508 -11.51492 -11.32656 -10.95158 -10.92818 -10.74131 -10.69762 -10.53283 -10.34453 -10.07335 -9.77655 -9.43549 -9.25583 -8.79776 -8.15871 -7.81098 -7.71781 -7.07058 -4.56559 2.16844 2.58949 3.05087 3.15719 3.28457 3.44979 3.76686 3.91142 3.94063 4.10619 4.37870 4.47289 4.68506 4.94931 5.01677 5.07550 5.22602 5.29990 5.34477 5.42976 5.52587 5.54734 5.64985 5.72039 5.75151 5.78006 5.80644 5.90652 5.97395 5.99249 6.04097 6.06649 6.08961 6.16214 6.28778 6.31048 6.51468 6.75598 6.82639 7.04048 7.04758 7.22736 7.42651 7.56450 7.72027 7.97572 8.12300 8.28732 8.54889 8.67865 9.11684 9.92926 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.004779 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.698782 B = 5857.861332 C = 6328.227086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 C -0.138 4.138 4 C 0.115 3.885 5 N -0.622 5.622 6 C 0.594 3.406 7 O -0.525 6.525 8 C -0.247 4.247 9 C -0.040 4.040 10 C -0.260 4.260 11 C -0.059 4.059 12 C -0.237 4.237 13 C 0.121 3.879 14 C -0.401 4.401 15 H 0.098 0.902 16 C 0.083 3.917 17 N -0.787 5.787 18 Si 0.916 3.084 19 H -0.269 1.269 20 H -0.289 1.289 21 H -0.241 1.241 22 C 0.116 3.884 23 H 0.091 0.909 24 C 0.046 3.954 25 O -0.387 6.387 26 C 0.059 3.941 27 C -0.122 4.122 28 H 0.108 0.892 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.289 0.711 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.755 1.625 6.651 15.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.071 4.071 3 C -0.196 4.196 4 C -0.008 4.008 5 N -0.359 5.359 6 C 0.388 3.612 7 O -0.401 6.401 8 C -0.251 4.251 9 C -0.059 4.059 10 C -0.280 4.280 11 C -0.078 4.078 12 C -0.256 4.256 13 C 0.116 3.884 14 C -0.428 4.428 15 H 0.116 0.884 16 C -0.139 4.139 17 N -0.409 5.409 18 Si 0.742 3.258 19 H -0.195 1.195 20 H -0.216 1.216 21 H -0.164 1.164 22 C 0.012 3.988 23 H 0.109 0.891 24 C -0.032 4.032 25 O -0.306 6.306 26 C -0.018 4.018 27 C -0.141 4.141 28 H 0.127 0.873 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.791 1.335 6.926 14.606 hybrid contribution 0.243 -0.188 -0.740 0.801 sum -12.548 1.147 6.186 14.037 Atomic orbital electron populations 1.21632 0.93036 1.02367 1.02404 1.21248 0.95956 0.95900 0.94005 1.21812 1.01828 0.94115 1.01802 1.22288 0.84278 0.97353 0.96907 1.48544 1.15492 1.67412 1.04461 1.18326 0.81852 0.75201 0.85850 1.90736 1.22456 1.48884 1.78016 1.19213 0.98116 1.17473 0.90329 1.20835 0.94119 0.95807 0.95125 1.20238 0.99950 1.14967 0.92820 1.20705 0.93684 0.95857 0.97541 1.21004 0.97803 1.11504 0.95315 1.17408 0.92607 0.88070 0.90310 1.19655 0.90696 1.27866 1.04576 0.88445 1.26338 0.94965 0.95270 0.97318 1.69597 1.04197 1.31597 1.35530 0.86268 0.77733 0.82119 0.79671 1.19521 1.21605 1.16415 1.22459 0.97314 0.96445 0.82611 0.89131 1.23304 0.85268 0.95112 0.99491 1.88414 1.15531 1.44747 1.81929 1.23237 0.91462 0.86828 1.00231 1.23445 0.94445 0.97102 0.99092 0.87341 0.92043 0.91829 0.92081 0.91994 0.92033 0.92530 0.91888 0.89954 0.88420 0.88606 0.88646 0.87891 0.90037 0.90221 0.90941 0.89738 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.25 36.78 0.30 -0.82 16 2 C -0.07 -0.76 0.73 -153.74 -0.11 -0.87 16 3 C -0.14 -1.48 8.45 37.15 0.31 -1.17 16 4 C 0.11 1.63 3.61 -2.92 -0.01 1.62 16 5 N -0.62 -11.04 3.13 -163.78 -0.51 -11.55 16 6 C 0.59 13.54 6.56 -12.26 -0.08 13.46 16 7 O -0.53 -13.84 15.00 5.27 0.08 -13.77 16 8 C -0.25 -5.78 5.38 -104.37 -0.56 -6.34 16 9 C -0.04 -0.82 8.32 -39.22 -0.33 -1.14 16 10 C -0.26 -5.13 10.03 -39.37 -0.39 -5.53 16 11 C -0.06 -1.23 10.01 -39.60 -0.40 -1.63 16 12 C -0.24 -5.60 7.13 -38.89 -0.28 -5.87 16 13 C 0.12 3.08 5.18 -106.54 -0.55 2.53 16 14 C -0.40 -11.11 8.31 -37.81 -0.31 -11.43 16 15 H 0.10 2.95 6.93 -52.48 -0.36 2.59 16 16 C 0.08 2.20 5.42 -17.30 -0.09 2.10 16 17 N -0.79 -21.00 13.92 55.56 0.77 -20.23 16 18 Si 0.92 20.95 24.46 -169.99 -4.16 16.79 16 19 H -0.27 -5.80 6.69 56.52 0.38 -5.42 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.24 -5.74 6.80 56.52 0.38 -5.35 16 22 C 0.12 1.77 3.19 -66.14 -0.21 1.56 16 23 H 0.09 1.41 8.13 -52.00 -0.42 0.99 16 24 C 0.05 0.72 7.31 37.43 0.27 0.99 16 25 O -0.39 -5.88 11.37 -35.23 -0.40 -6.28 16 26 C 0.06 0.69 5.93 37.74 0.22 0.92 16 27 C -0.12 -1.38 3.53 -87.91 -0.31 -1.69 16 28 H 0.11 1.03 8.03 -52.66 -0.42 0.61 16 29 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 32 H 0.06 0.81 7.78 -51.93 -0.40 0.40 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.85 5.39 -51.89 -0.28 0.57 16 36 H 0.08 1.27 7.50 -52.04 -0.39 0.88 16 37 H 0.10 1.73 5.90 -52.48 -0.31 1.42 16 38 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 40 H 0.10 2.40 4.47 -52.49 -0.23 2.17 16 41 H 0.29 6.91 8.29 -40.82 -0.34 6.57 16 42 H 0.08 1.49 7.28 -52.14 -0.38 1.11 16 43 H 0.07 1.03 8.17 -51.73 -0.42 0.61 16 44 H 0.08 0.80 8.07 -52.42 -0.42 0.38 16 45 H 0.06 0.77 5.55 -51.97 -0.29 0.48 16 LS Contribution 342.55 15.07 5.16 5.16 Total: -1.00 -30.18 342.55 -7.98 -38.16 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.39 Total: 5.02 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.53 Total: -13.31 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 0.26 Total: -31.78 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.32 Total: -20.05 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.16 Total: 16.79 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.18 -7.98 -38.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601620453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.661 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds