Wall clock time and date at job start Tue Mar 31 2020 12:42:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52268 * 1
3 3 C 1.52978 * 110.58506 * 2 1
4 4 C 1.54031 * 111.57637 * 237.29601 * 2 1 3
5 5 N 1.47571 * 105.81597 * 206.92156 * 4 2 1
6 6 C 1.35352 * 124.68513 * 197.98944 * 5 4 2
7 7 O 1.21605 * 120.00673 * 174.86223 * 6 5 4
8 8 C 1.47434 * 119.99579 * 354.86037 * 6 5 4
9 9 C 1.39222 * 120.28542 * 319.84112 * 8 6 5
10 10 C 1.38219 * 120.09749 * 180.02562 * 9 8 6
11 11 C 1.38832 * 120.67031 * 0.02693 * 10 9 8
12 12 C 1.37597 * 120.57205 * 359.97438 * 11 10 9
13 13 C 1.40701 * 119.87912 * 359.68177 * 12 11 10
14 14 C 1.40892 * 120.32649 * 180.29252 * 13 12 11
15 15 H 1.08006 * 120.00095 * 151.99130 * 14 13 12
16 16 C 1.40275 * 120.00119 * 332.00644 * 14 13 12
17 17 N 1.30630 * 120.00095 * 162.01237 * 16 14 13
18 18 Si 1.86793 * 119.99735 * 342.00464 * 16 14 13
19 19 H 1.48507 * 109.47015 * 95.20499 * 18 16 14
20 20 H 1.48506 * 109.47402 * 215.20004 * 18 16 14
21 21 H 1.48500 * 109.47481 * 335.20414 * 18 16 14
22 22 C 1.46516 * 109.13656 * 17.45233 * 5 4 2
23 23 H 1.08881 * 111.69796 * 243.66245 * 22 5 4
24 24 C 1.53519 * 111.89640 * 117.44440 * 22 5 4
25 25 O 1.43152 * 108.06952 * 264.50922 * 24 22 5
26 26 C 1.43508 * 109.62747 * 3.16324 * 25 24 22
27 27 C 1.54119 * 106.00878 * 335.72800 * 26 25 24
28 28 H 1.07683 * 114.30399 * 271.80984 * 27 26 25
29 29 H 1.09007 * 109.46764 * 296.73553 * 1 2 3
30 30 H 1.09002 * 109.47290 * 56.73276 * 1 2 3
31 31 H 1.08999 * 109.47316 * 176.74195 * 1 2 3
32 32 H 1.08998 * 109.47073 * 184.12097 * 3 2 1
33 33 H 1.09001 * 109.46896 * 304.12244 * 3 2 1
34 34 H 1.08999 * 109.46926 * 64.11533 * 3 2 1
35 35 H 1.09062 * 109.87037 * 325.42955 * 4 2 1
36 36 H 1.08803 * 110.38793 * 87.56011 * 4 2 1
37 37 H 1.08006 * 119.95194 * 359.97438 * 9 8 6
38 38 H 1.07996 * 119.66573 * 179.97438 * 10 9 8
39 39 H 1.08005 * 119.71173 * 179.97438 * 11 10 9
40 40 H 1.08000 * 120.05594 * 180.02562 * 12 11 10
41 41 H 0.96999 * 119.99952 * 179.97438 * 17 16 14
42 42 H 1.08617 * 111.08622 * 24.71678 * 24 22 5
43 43 H 1.09352 * 109.34811 * 146.07934 * 24 22 5
44 44 H 1.08129 * 109.82276 * 215.68666 * 26 25 24
45 45 H 1.08920 * 107.86529 * 93.87286 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5227 0.0000 0.0000
3 6 2.0605 1.4321 0.0000
4 6 2.0891 -0.7739 -1.2053
5 7 3.4143 -1.2654 -0.7809
6 6 4.3860 -1.6860 -1.6241
7 8 5.4809 -1.9865 -1.1885
8 6 4.1169 -1.7801 -3.0706
9 6 2.8929 -2.2613 -3.5272
10 6 2.6450 -2.3483 -4.8842
11 6 3.6074 -1.9598 -5.8063
12 6 4.8265 -1.4803 -5.3855
13 6 5.1013 -1.3749 -4.0096
14 6 6.3442 -0.8794 -3.5683
15 1 6.4182 -0.3799 -2.6135
16 6 7.4855 -1.0345 -4.3690
17 7 8.5404 -0.2950 -4.1528
18 14 7.4967 -2.2984 -5.7443
19 1 7.1277 -1.6411 -7.0238
20 1 8.8546 -2.8876 -5.8641
21 1 6.5168 -3.3715 -5.4385
22 6 3.5020 -1.2092 0.6805
23 1 4.2728 -0.5149 1.0111
24 6 3.6874 -2.6029 1.2969
25 8 2.3985 -3.0939 1.6803
26 6 1.3883 -2.1523 1.2899
27 6 2.0943 -0.7854 1.1973
28 1 2.1181 -0.2353 2.1227
29 1 -0.3633 0.4624 0.9179
30 1 -0.3634 0.5637 -0.8593
31 1 -0.3634 -1.0260 -0.0584
32 1 3.1478 1.4118 -0.0738
33 1 1.6486 1.9749 -0.8508
34 1 1.7683 1.9299 0.9246
35 1 1.4400 -1.6177 -1.4423
36 1 2.1881 -0.1156 -2.0659
37 1 2.1363 -2.5679 -2.8201
38 1 1.6932 -2.7230 -5.2307
39 1 3.3974 -2.0347 -6.8631
40 1 5.5690 -1.1800 -6.1100
41 1 9.3297 -0.4025 -4.7062
42 1 4.1404 -3.2876 0.5858
43 1 4.3163 -2.5242 2.1880
44 1 0.5997 -2.1328 2.0295
45 1 1.0132 -2.4509 0.3119
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601620453.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:42:39
Heat of formation + Delta-G solvation = -73.869814 kcal
Electronic energy + Delta-G solvation = -27774.240500 eV
Core-core repulsion = 24141.429023 eV
Total energy + Delta-G solvation = -3632.811477 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-42.41066 -40.26040 -38.60174 -37.94333 -35.69508 -34.72065 -32.44000 -32.40695
-30.84004 -29.92186 -28.13815 -27.58504 -26.88429 -24.44430 -23.93363 -23.23412
-22.16412 -20.33588 -20.16120 -19.34936 -18.48314 -17.63578 -17.27342 -16.95738
-16.52542 -16.21926 -15.96074 -15.84927 -15.43210 -15.38202 -14.90798 -14.61000
-14.50579 -14.22963 -13.98978 -13.90100 -13.51347 -13.40367 -13.19417 -13.11642
-12.86832 -12.78010 -12.74784 -12.57976 -12.36401 -12.16123 -11.97098 -11.72021
-11.66726 -11.57712 -11.43661 -11.07230 -10.67605 -10.48029 -9.72644 -9.55240
-9.47568 -8.99719 -6.55608 0.39718 0.79949 1.19278 1.34734 1.44018
1.93889 2.04203 2.12646 2.57474 2.84547 3.02599 3.37609 3.47873
3.72266 3.84724 3.98589 4.04294 4.06881 4.16305 4.27594 4.33365
4.37291 4.42164 4.60657 4.66596 4.70486 4.74541 4.75280 4.82145
4.82963 4.86706 4.94216 4.96688 5.02792 5.13315 5.19236 5.22157
5.35124 5.38134 5.48651 5.52582 5.69739 5.79750 5.90746 5.92078
6.14288 6.31780 6.50712 6.70196 6.70562 7.39215 8.08205
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.017347 B = 0.004779 C = 0.004424
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1613.698782 B = 5857.861332 C = 6328.227086
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.058 4.058
3 C -0.138 4.138
4 C 0.106 3.894
5 N -0.616 5.616
6 C 0.583 3.417
7 O -0.579 6.579
8 C -0.262 4.262
9 C -0.040 4.040
10 C -0.234 4.234
11 C -0.057 4.057
12 C -0.255 4.255
13 C 0.102 3.898
14 C -0.447 4.447
15 H 0.045 0.955
16 C 0.042 3.958
17 N -0.837 5.837
18 Si 0.972 3.028
19 H -0.242 1.242
20 H -0.278 1.278
21 H -0.256 1.256
22 C 0.101 3.899
23 H 0.078 0.922
24 C 0.052 3.948
25 O -0.399 6.399
26 C 0.055 3.945
27 C -0.102 4.102
28 H 0.137 0.863
29 H 0.084 0.916
30 H 0.069 0.931
31 H 0.069 0.931
32 H 0.026 0.974
33 H 0.065 0.935
34 H 0.083 0.917
35 H 0.079 0.921
36 H 0.068 0.932
37 H 0.128 0.872
38 H 0.143 0.857
39 H 0.137 0.863
40 H 0.103 0.897
41 H 0.297 0.703
42 H 0.041 0.959
43 H 0.084 0.916
44 H 0.120 0.880
45 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.842 0.930 5.981 19.791
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.058 4.058
3 C -0.195 4.195
4 C -0.016 4.016
5 N -0.351 5.351
6 C 0.377 3.623
7 O -0.459 6.459
8 C -0.267 4.267
9 C -0.058 4.058
10 C -0.253 4.253
11 C -0.075 4.075
12 C -0.274 4.274
13 C 0.099 3.901
14 C -0.475 4.475
15 H 0.063 0.937
16 C -0.174 4.174
17 N -0.462 5.462
18 Si 0.795 3.205
19 H -0.167 1.167
20 H -0.205 1.205
21 H -0.180 1.180
22 C -0.003 4.003
23 H 0.096 0.904
24 C -0.026 4.026
25 O -0.319 6.319
26 C -0.020 4.020
27 C -0.120 4.120
28 H 0.155 0.845
29 H 0.103 0.897
30 H 0.088 0.912
31 H 0.088 0.912
32 H 0.045 0.955
33 H 0.084 0.916
34 H 0.101 0.899
35 H 0.097 0.903
36 H 0.086 0.914
37 H 0.146 0.854
38 H 0.161 0.839
39 H 0.155 0.845
40 H 0.120 0.880
41 H 0.108 0.892
42 H 0.059 0.941
43 H 0.102 0.898
44 H 0.138 0.862
45 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -17.946 0.672 6.264 19.019
hybrid contribution 1.502 -0.012 -0.447 1.567
sum -16.444 0.659 5.816 17.455
Atomic orbital electron populations
1.21638 0.89886 1.03415 1.04009 1.21248 0.98059 0.94921 0.91622
1.21817 0.99568 0.94629 1.03474 1.22593 0.82563 0.98086 0.98348
1.48430 1.15812 1.65472 1.05379 1.18467 0.82059 0.75212 0.86573
1.90693 1.24828 1.51480 1.78905 1.19578 0.99136 1.17284 0.90655
1.21171 0.93346 0.94714 0.96576 1.20862 1.01130 1.11270 0.92014
1.21203 0.92242 0.93943 1.00121 1.21136 0.99484 1.12609 0.94156
1.17670 0.92226 0.88149 0.92100 1.19432 0.93085 1.31507 1.03472
0.93707 1.27060 0.94235 0.96629 0.99432 1.69631 1.05183 1.33675
1.37708 0.85432 0.77701 0.79364 0.78045 1.16690 1.20519 1.17997
1.22683 1.00155 0.96282 0.81172 0.90445 1.23094 0.86130 0.94322
0.99037 1.88405 1.15532 1.46087 1.81859 1.23514 0.91209 0.85909
1.01376 1.23510 0.90858 0.97482 1.00193 0.84544 0.89742 0.91154
0.91192 0.95466 0.91566 0.89857 0.90315 0.91378 0.85408 0.83931
0.84477 0.87960 0.89240 0.94067 0.89802 0.86189 0.91991
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.51 8.25 71.74 0.59 -0.92 16
2 C -0.06 -1.08 0.73 -51.68 -0.04 -1.12 16
3 C -0.14 -2.71 8.45 71.97 0.61 -2.10 16
4 C 0.11 2.86 3.61 86.52 0.31 3.17 16
5 N -0.62 -22.56 3.13 -790.01 -2.47 -25.03 16
6 C 0.58 28.34 6.56 86.58 0.57 28.91 16
7 O -0.58 -33.58 15.00 -4.05 -0.06 -33.64 16
8 C -0.26 -12.59 5.38 -19.70 -0.11 -12.70 16
9 C -0.04 -1.51 8.32 22.50 0.19 -1.33 16
10 C -0.23 -8.09 10.03 22.41 0.22 -7.86 16
11 C -0.06 -2.15 10.01 22.26 0.22 -1.92 16
12 C -0.25 -11.85 7.13 22.72 0.16 -11.69 16
13 C 0.10 5.45 5.18 -21.11 -0.11 5.34 16
14 C -0.45 -26.99 8.31 23.42 0.19 -26.80 16
15 H 0.04 3.06 6.93 -2.91 -0.02 3.04 16
16 C 0.04 2.41 5.42 85.37 0.46 2.87 16
17 N -0.84 -48.26 13.92 21.88 0.30 -47.96 16
18 Si 0.97 44.55 24.46 68.60 1.68 46.23 16
19 H -0.24 -9.91 6.69 99.48 0.67 -9.25 16
20 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16
21 H -0.26 -12.16 6.80 99.48 0.68 -11.48 16
22 C 0.10 3.15 3.19 46.14 0.15 3.30 16
23 H 0.08 2.59 8.13 -2.45 -0.02 2.57 16
24 C 0.05 1.68 7.31 72.16 0.53 2.21 16
25 O -0.40 -11.53 11.37 -148.98 -1.69 -13.23 16
26 C 0.06 1.11 5.93 72.36 0.43 1.54 16
27 C -0.10 -2.02 3.53 -9.04 -0.03 -2.05 16
28 H 0.14 2.04 8.03 -3.07 -0.02 2.02 16
29 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16
30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16
31 H 0.07 0.72 6.56 -2.39 -0.02 0.70 16
32 H 0.03 0.71 7.78 -2.39 -0.02 0.69 16
33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
35 H 0.08 1.88 5.39 -2.35 -0.01 1.87 16
36 H 0.07 2.04 7.50 -2.49 -0.02 2.02 16
37 H 0.13 4.07 5.90 -2.91 -0.02 4.05 16
38 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16
39 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16
40 H 0.10 4.71 4.47 -2.91 -0.01 4.70 16
41 H 0.30 15.20 8.29 -92.71 -0.77 14.44 16
42 H 0.04 1.65 7.28 -2.59 -0.02 1.64 16
43 H 0.08 2.48 8.17 -2.20 -0.02 2.46 16
44 H 0.12 1.63 8.07 -2.84 -0.02 1.60 16
45 H 0.06 1.27 5.55 -2.43 -0.01 1.25 16
Total: -1.00 -75.27 342.55 3.03 -72.24
By element:
Atomic # 1 Polarization: 21.61 SS G_CDS: 0.92 Total: 22.53 kcal
Atomic # 6 Polarization: -25.50 SS G_CDS: 4.35 Total: -21.15 kcal
Atomic # 7 Polarization: -70.82 SS G_CDS: -2.16 Total: -72.99 kcal
Atomic # 8 Polarization: -45.11 SS G_CDS: -1.76 Total: -46.86 kcal
Atomic # 14 Polarization: 44.55 SS G_CDS: 1.68 Total: 46.23 kcal
Total: -75.27 3.03 -72.24 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601620453.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.628 kcal
(2) G-P(sol) polarization free energy of solvation -75.274 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.902 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.242 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.870 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds