Wall clock time and date at job start Tue Mar 31 2020 12:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52268 * 1 3 3 C 1.52978 * 110.58506 * 2 1 4 4 C 1.54031 * 111.57637 * 237.29601 * 2 1 3 5 5 N 1.47571 * 105.81597 * 206.92156 * 4 2 1 6 6 C 1.35352 * 124.68513 * 197.98944 * 5 4 2 7 7 O 1.21605 * 120.00673 * 174.86223 * 6 5 4 8 8 C 1.47434 * 119.99579 * 354.86037 * 6 5 4 9 9 C 1.39222 * 120.28542 * 319.84112 * 8 6 5 10 10 C 1.38219 * 120.09749 * 180.02562 * 9 8 6 11 11 C 1.38832 * 120.67031 * 0.02693 * 10 9 8 12 12 C 1.37597 * 120.57205 * 359.97438 * 11 10 9 13 13 C 1.40701 * 119.87912 * 359.68177 * 12 11 10 14 14 C 1.40892 * 120.32649 * 180.29252 * 13 12 11 15 15 H 1.08006 * 120.00095 * 151.99130 * 14 13 12 16 16 C 1.40275 * 120.00119 * 332.00644 * 14 13 12 17 17 N 1.30630 * 120.00095 * 162.01237 * 16 14 13 18 18 Si 1.86793 * 119.99735 * 342.00464 * 16 14 13 19 19 H 1.48507 * 109.47015 * 95.20499 * 18 16 14 20 20 H 1.48506 * 109.47402 * 215.20004 * 18 16 14 21 21 H 1.48500 * 109.47481 * 335.20414 * 18 16 14 22 22 C 1.46516 * 109.13656 * 17.45233 * 5 4 2 23 23 H 1.08881 * 111.69796 * 243.66245 * 22 5 4 24 24 C 1.53519 * 111.89640 * 117.44440 * 22 5 4 25 25 O 1.43152 * 108.06952 * 264.50922 * 24 22 5 26 26 C 1.43508 * 109.62747 * 3.16324 * 25 24 22 27 27 C 1.54119 * 106.00878 * 335.72800 * 26 25 24 28 28 H 1.07683 * 114.30399 * 271.80984 * 27 26 25 29 29 H 1.09007 * 109.46764 * 296.73553 * 1 2 3 30 30 H 1.09002 * 109.47290 * 56.73276 * 1 2 3 31 31 H 1.08999 * 109.47316 * 176.74195 * 1 2 3 32 32 H 1.08998 * 109.47073 * 184.12097 * 3 2 1 33 33 H 1.09001 * 109.46896 * 304.12244 * 3 2 1 34 34 H 1.08999 * 109.46926 * 64.11533 * 3 2 1 35 35 H 1.09062 * 109.87037 * 325.42955 * 4 2 1 36 36 H 1.08803 * 110.38793 * 87.56011 * 4 2 1 37 37 H 1.08006 * 119.95194 * 359.97438 * 9 8 6 38 38 H 1.07996 * 119.66573 * 179.97438 * 10 9 8 39 39 H 1.08005 * 119.71173 * 179.97438 * 11 10 9 40 40 H 1.08000 * 120.05594 * 180.02562 * 12 11 10 41 41 H 0.96999 * 119.99952 * 179.97438 * 17 16 14 42 42 H 1.08617 * 111.08622 * 24.71678 * 24 22 5 43 43 H 1.09352 * 109.34811 * 146.07934 * 24 22 5 44 44 H 1.08129 * 109.82276 * 215.68666 * 26 25 24 45 45 H 1.08920 * 107.86529 * 93.87286 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5227 0.0000 0.0000 3 6 2.0605 1.4321 0.0000 4 6 2.0891 -0.7739 -1.2053 5 7 3.4143 -1.2654 -0.7809 6 6 4.3860 -1.6860 -1.6241 7 8 5.4809 -1.9865 -1.1885 8 6 4.1169 -1.7801 -3.0706 9 6 2.8929 -2.2613 -3.5272 10 6 2.6450 -2.3483 -4.8842 11 6 3.6074 -1.9598 -5.8063 12 6 4.8265 -1.4803 -5.3855 13 6 5.1013 -1.3749 -4.0096 14 6 6.3442 -0.8794 -3.5683 15 1 6.4182 -0.3799 -2.6135 16 6 7.4855 -1.0345 -4.3690 17 7 8.5404 -0.2950 -4.1528 18 14 7.4967 -2.2984 -5.7443 19 1 7.1277 -1.6411 -7.0238 20 1 8.8546 -2.8876 -5.8641 21 1 6.5168 -3.3715 -5.4385 22 6 3.5020 -1.2092 0.6805 23 1 4.2728 -0.5149 1.0111 24 6 3.6874 -2.6029 1.2969 25 8 2.3985 -3.0939 1.6803 26 6 1.3883 -2.1523 1.2899 27 6 2.0943 -0.7854 1.1973 28 1 2.1181 -0.2353 2.1227 29 1 -0.3633 0.4624 0.9179 30 1 -0.3634 0.5637 -0.8593 31 1 -0.3634 -1.0260 -0.0584 32 1 3.1478 1.4118 -0.0738 33 1 1.6486 1.9749 -0.8508 34 1 1.7683 1.9299 0.9246 35 1 1.4400 -1.6177 -1.4423 36 1 2.1881 -0.1156 -2.0659 37 1 2.1363 -2.5679 -2.8201 38 1 1.6932 -2.7230 -5.2307 39 1 3.3974 -2.0347 -6.8631 40 1 5.5690 -1.1800 -6.1100 41 1 9.3297 -0.4025 -4.7062 42 1 4.1404 -3.2876 0.5858 43 1 4.3163 -2.5242 2.1880 44 1 0.5997 -2.1328 2.0295 45 1 1.0132 -2.4509 0.3119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601620453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:39 Heat of formation + Delta-G solvation = -73.869814 kcal Electronic energy + Delta-G solvation = -27774.240500 eV Core-core repulsion = 24141.429023 eV Total energy + Delta-G solvation = -3632.811477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.41066 -40.26040 -38.60174 -37.94333 -35.69508 -34.72065 -32.44000 -32.40695 -30.84004 -29.92186 -28.13815 -27.58504 -26.88429 -24.44430 -23.93363 -23.23412 -22.16412 -20.33588 -20.16120 -19.34936 -18.48314 -17.63578 -17.27342 -16.95738 -16.52542 -16.21926 -15.96074 -15.84927 -15.43210 -15.38202 -14.90798 -14.61000 -14.50579 -14.22963 -13.98978 -13.90100 -13.51347 -13.40367 -13.19417 -13.11642 -12.86832 -12.78010 -12.74784 -12.57976 -12.36401 -12.16123 -11.97098 -11.72021 -11.66726 -11.57712 -11.43661 -11.07230 -10.67605 -10.48029 -9.72644 -9.55240 -9.47568 -8.99719 -6.55608 0.39718 0.79949 1.19278 1.34734 1.44018 1.93889 2.04203 2.12646 2.57474 2.84547 3.02599 3.37609 3.47873 3.72266 3.84724 3.98589 4.04294 4.06881 4.16305 4.27594 4.33365 4.37291 4.42164 4.60657 4.66596 4.70486 4.74541 4.75280 4.82145 4.82963 4.86706 4.94216 4.96688 5.02792 5.13315 5.19236 5.22157 5.35124 5.38134 5.48651 5.52582 5.69739 5.79750 5.90746 5.92078 6.14288 6.31780 6.50712 6.70196 6.70562 7.39215 8.08205 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.004779 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.698782 B = 5857.861332 C = 6328.227086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.058 4.058 3 C -0.138 4.138 4 C 0.106 3.894 5 N -0.616 5.616 6 C 0.583 3.417 7 O -0.579 6.579 8 C -0.262 4.262 9 C -0.040 4.040 10 C -0.234 4.234 11 C -0.057 4.057 12 C -0.255 4.255 13 C 0.102 3.898 14 C -0.447 4.447 15 H 0.045 0.955 16 C 0.042 3.958 17 N -0.837 5.837 18 Si 0.972 3.028 19 H -0.242 1.242 20 H -0.278 1.278 21 H -0.256 1.256 22 C 0.101 3.899 23 H 0.078 0.922 24 C 0.052 3.948 25 O -0.399 6.399 26 C 0.055 3.945 27 C -0.102 4.102 28 H 0.137 0.863 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.026 0.974 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.128 0.872 38 H 0.143 0.857 39 H 0.137 0.863 40 H 0.103 0.897 41 H 0.297 0.703 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.120 0.880 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.842 0.930 5.981 19.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.058 4.058 3 C -0.195 4.195 4 C -0.016 4.016 5 N -0.351 5.351 6 C 0.377 3.623 7 O -0.459 6.459 8 C -0.267 4.267 9 C -0.058 4.058 10 C -0.253 4.253 11 C -0.075 4.075 12 C -0.274 4.274 13 C 0.099 3.901 14 C -0.475 4.475 15 H 0.063 0.937 16 C -0.174 4.174 17 N -0.462 5.462 18 Si 0.795 3.205 19 H -0.167 1.167 20 H -0.205 1.205 21 H -0.180 1.180 22 C -0.003 4.003 23 H 0.096 0.904 24 C -0.026 4.026 25 O -0.319 6.319 26 C -0.020 4.020 27 C -0.120 4.120 28 H 0.155 0.845 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.146 0.854 38 H 0.161 0.839 39 H 0.155 0.845 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.059 0.941 43 H 0.102 0.898 44 H 0.138 0.862 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.946 0.672 6.264 19.019 hybrid contribution 1.502 -0.012 -0.447 1.567 sum -16.444 0.659 5.816 17.455 Atomic orbital electron populations 1.21638 0.89886 1.03415 1.04009 1.21248 0.98059 0.94921 0.91622 1.21817 0.99568 0.94629 1.03474 1.22593 0.82563 0.98086 0.98348 1.48430 1.15812 1.65472 1.05379 1.18467 0.82059 0.75212 0.86573 1.90693 1.24828 1.51480 1.78905 1.19578 0.99136 1.17284 0.90655 1.21171 0.93346 0.94714 0.96576 1.20862 1.01130 1.11270 0.92014 1.21203 0.92242 0.93943 1.00121 1.21136 0.99484 1.12609 0.94156 1.17670 0.92226 0.88149 0.92100 1.19432 0.93085 1.31507 1.03472 0.93707 1.27060 0.94235 0.96629 0.99432 1.69631 1.05183 1.33675 1.37708 0.85432 0.77701 0.79364 0.78045 1.16690 1.20519 1.17997 1.22683 1.00155 0.96282 0.81172 0.90445 1.23094 0.86130 0.94322 0.99037 1.88405 1.15532 1.46087 1.81859 1.23514 0.91209 0.85909 1.01376 1.23510 0.90858 0.97482 1.00193 0.84544 0.89742 0.91154 0.91192 0.95466 0.91566 0.89857 0.90315 0.91378 0.85408 0.83931 0.84477 0.87960 0.89240 0.94067 0.89802 0.86189 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 8.25 71.74 0.59 -0.92 16 2 C -0.06 -1.08 0.73 -51.68 -0.04 -1.12 16 3 C -0.14 -2.71 8.45 71.97 0.61 -2.10 16 4 C 0.11 2.86 3.61 86.52 0.31 3.17 16 5 N -0.62 -22.56 3.13 -790.01 -2.47 -25.03 16 6 C 0.58 28.34 6.56 86.58 0.57 28.91 16 7 O -0.58 -33.58 15.00 -4.05 -0.06 -33.64 16 8 C -0.26 -12.59 5.38 -19.70 -0.11 -12.70 16 9 C -0.04 -1.51 8.32 22.50 0.19 -1.33 16 10 C -0.23 -8.09 10.03 22.41 0.22 -7.86 16 11 C -0.06 -2.15 10.01 22.26 0.22 -1.92 16 12 C -0.25 -11.85 7.13 22.72 0.16 -11.69 16 13 C 0.10 5.45 5.18 -21.11 -0.11 5.34 16 14 C -0.45 -26.99 8.31 23.42 0.19 -26.80 16 15 H 0.04 3.06 6.93 -2.91 -0.02 3.04 16 16 C 0.04 2.41 5.42 85.37 0.46 2.87 16 17 N -0.84 -48.26 13.92 21.88 0.30 -47.96 16 18 Si 0.97 44.55 24.46 68.60 1.68 46.23 16 19 H -0.24 -9.91 6.69 99.48 0.67 -9.25 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.26 -12.16 6.80 99.48 0.68 -11.48 16 22 C 0.10 3.15 3.19 46.14 0.15 3.30 16 23 H 0.08 2.59 8.13 -2.45 -0.02 2.57 16 24 C 0.05 1.68 7.31 72.16 0.53 2.21 16 25 O -0.40 -11.53 11.37 -148.98 -1.69 -13.23 16 26 C 0.06 1.11 5.93 72.36 0.43 1.54 16 27 C -0.10 -2.02 3.53 -9.04 -0.03 -2.05 16 28 H 0.14 2.04 8.03 -3.07 -0.02 2.02 16 29 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.72 6.56 -2.39 -0.02 0.70 16 32 H 0.03 0.71 7.78 -2.39 -0.02 0.69 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.88 5.39 -2.35 -0.01 1.87 16 36 H 0.07 2.04 7.50 -2.49 -0.02 2.02 16 37 H 0.13 4.07 5.90 -2.91 -0.02 4.05 16 38 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 39 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 40 H 0.10 4.71 4.47 -2.91 -0.01 4.70 16 41 H 0.30 15.20 8.29 -92.71 -0.77 14.44 16 42 H 0.04 1.65 7.28 -2.59 -0.02 1.64 16 43 H 0.08 2.48 8.17 -2.20 -0.02 2.46 16 44 H 0.12 1.63 8.07 -2.84 -0.02 1.60 16 45 H 0.06 1.27 5.55 -2.43 -0.01 1.25 16 Total: -1.00 -75.27 342.55 3.03 -72.24 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.92 Total: 22.53 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 4.35 Total: -21.15 kcal Atomic # 7 Polarization: -70.82 SS G_CDS: -2.16 Total: -72.99 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -1.76 Total: -46.86 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.68 Total: 46.23 kcal Total: -75.27 3.03 -72.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601620453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.628 kcal (2) G-P(sol) polarization free energy of solvation -75.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds