Wall clock time and date at job start Tue Mar 31 2020 10:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47372 * 87.85439 * 3 2 1 5 5 C 1.37102 * 119.99978 * 264.26164 * 4 3 2 6 6 H 1.08002 * 119.99698 * 196.49332 * 5 4 3 7 7 C 1.38953 * 119.99894 * 16.49623 * 5 4 3 8 8 N 1.31407 * 119.99964 * 24.68595 * 7 5 4 9 9 Si 1.86799 * 119.99894 * 204.67994 * 7 5 4 10 10 H 1.48494 * 109.46972 * 94.99138 * 9 7 5 11 11 H 1.48496 * 109.47151 * 214.99660 * 9 7 5 12 12 H 1.48503 * 109.46935 * 334.99732 * 9 7 5 13 13 C 1.34771 * 120.00057 * 84.26438 * 4 3 2 14 14 O 1.21295 * 120.00434 * 179.97438 * 13 4 3 15 15 C 1.50704 * 119.99978 * 359.97438 * 13 4 3 16 16 C 1.53000 * 109.47029 * 179.97438 * 15 13 4 17 17 C 1.53121 * 109.51800 * 175.00137 * 16 15 13 18 18 C 1.53037 * 109.27593 * 177.62291 * 17 16 15 19 19 N 1.46844 * 109.52619 * 300.82164 * 18 17 16 20 20 C 1.46899 * 111.00191 * 185.83803 * 19 18 17 21 21 C 1.52997 * 109.47125 * 76.32452 * 20 19 18 22 22 F 1.39891 * 109.47579 * 293.85275 * 21 20 19 23 23 F 1.39904 * 109.46930 * 53.85354 * 21 20 19 24 24 C 1.46846 * 111.19582 * 61.74288 * 19 18 17 25 25 C 1.53038 * 109.52447 * 298.25814 * 24 19 18 26 26 H 1.09011 * 109.47090 * 327.85741 * 3 2 1 27 27 H 1.08998 * 109.47557 * 207.85705 * 3 2 1 28 28 H 0.97002 * 120.00202 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.46515 * 60.00284 * 15 13 4 30 30 H 1.08998 * 109.46997 * 300.00455 * 15 13 4 31 31 H 1.08999 * 109.52274 * 54.87819 * 16 15 13 32 32 H 1.08994 * 109.50644 * 57.68714 * 17 16 15 33 33 H 1.09004 * 109.50463 * 297.56483 * 17 16 15 34 34 H 1.09001 * 109.46292 * 180.79990 * 18 17 16 35 35 H 1.09007 * 109.45155 * 60.83526 * 18 17 16 36 36 H 1.09003 * 109.47264 * 316.32860 * 20 19 18 37 37 H 1.08997 * 109.47323 * 196.33072 * 20 19 18 38 38 H 1.09008 * 109.47038 * 173.84818 * 21 20 19 39 39 H 1.09000 * 109.46692 * 58.27089 * 24 19 18 40 40 H 1.09003 * 109.46152 * 178.24363 * 24 19 18 41 41 H 1.09008 * 109.50266 * 299.23817 * 25 24 19 42 42 H 1.08998 * 109.50410 * 179.12294 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 -0.0508 -1.3802 5 6 3.4374 -1.2540 -1.9423 6 1 4.0372 -1.2799 -2.8400 7 6 3.0111 -2.4399 -1.3569 8 7 1.9346 -2.4509 -0.6034 9 14 3.9684 -4.0186 -1.6413 10 1 4.9254 -4.2250 -0.5248 11 1 3.0260 -5.1645 -1.7039 12 1 4.7148 -3.9211 -2.9214 13 6 3.2106 1.0845 -2.0974 14 8 3.6154 1.0420 -3.2400 15 6 2.8353 2.4069 -1.4798 16 6 3.0574 3.5268 -2.4983 17 6 2.5601 4.8532 -1.9168 18 6 2.8389 5.9787 -2.9156 19 7 4.2808 6.0511 -3.1836 20 6 4.6014 7.2078 -4.0305 21 6 4.5558 8.4845 -3.1887 22 9 3.2430 8.7173 -2.7653 23 9 5.3865 8.3372 -2.0727 24 6 4.7720 4.8054 -3.7863 25 6 4.5510 3.6447 -2.8136 26 1 2.9717 -0.8694 0.5468 27 1 2.9710 0.9093 0.4802 28 1 1.6368 -3.2789 -0.1951 29 1 3.4554 2.5867 -0.6016 30 1 1.7860 2.3857 -1.1855 31 1 2.5087 3.3016 -3.4128 32 1 3.0815 5.0589 -0.9820 33 1 1.4881 4.7896 -1.7300 34 1 2.4989 6.9267 -2.4986 35 1 2.3061 5.7792 -3.8454 36 1 3.8735 7.2793 -4.8387 37 1 5.5997 7.0850 -4.4506 38 1 4.8991 9.3276 -3.7884 39 1 4.2302 4.6114 -4.7120 40 1 5.8362 4.9011 -4.0017 41 1 5.1038 3.8314 -1.8928 42 1 4.9015 2.7178 -3.2675 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602087096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:25 Heat of formation + Delta-G solvation = -103.969297 kcal Electronic energy + Delta-G solvation = -26860.562974 eV Core-core repulsion = 22704.509507 eV Total energy + Delta-G solvation = -4156.053467 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.04787 -47.03701 -39.50455 -38.37623 -35.88261 -34.67488 -34.06090 -31.90120 -30.68855 -30.25905 -27.68882 -27.19604 -24.75576 -23.22954 -22.82578 -21.71477 -19.62013 -18.91521 -17.89922 -17.76214 -17.44915 -16.53635 -16.39109 -16.19070 -15.38535 -14.92424 -14.81133 -14.46962 -14.24194 -14.10791 -13.95169 -13.55982 -13.38692 -13.08626 -12.97677 -12.84228 -12.65163 -12.38139 -12.14266 -12.08641 -11.72113 -11.56903 -11.39378 -11.31517 -11.16028 -11.13270 -10.97860 -10.57765 -10.40889 -10.38037 -10.22452 -10.03167 -9.96843 -9.22076 -8.49130 -8.45409 -8.02076 -6.51108 -3.96648 3.09900 3.22870 3.27243 3.52441 3.56951 3.75348 3.81762 3.97703 4.06460 4.12571 4.30074 4.70751 4.72729 4.88061 4.93737 5.05684 5.12153 5.19573 5.22534 5.27862 5.41520 5.52340 5.52998 5.69132 5.77135 5.87501 5.89616 6.01727 6.07463 6.15679 6.22790 6.30799 6.38835 6.49175 6.68056 6.76152 6.92664 7.05400 7.48326 7.93036 8.29950 8.73240 9.02643 9.22452 9.77770 10.55445 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.025707 B = 0.002966 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.945566 B = 9436.508210 C =10118.802095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.245 3.755 3 C 0.221 3.779 4 N -0.445 5.445 5 C -0.316 4.316 6 H 0.109 0.891 7 C 0.032 3.968 8 N -0.873 5.873 9 Si 0.923 3.077 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.457 3.543 14 O -0.572 6.572 15 C -0.131 4.131 16 C -0.067 4.067 17 C -0.112 4.112 18 C 0.043 3.957 19 N -0.533 5.533 20 C 0.000 4.000 21 C 0.270 3.730 22 F -0.206 7.206 23 F -0.195 7.195 24 C 0.060 3.940 25 C -0.113 4.113 26 H 0.125 0.875 27 H 0.085 0.915 28 H 0.272 0.728 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.032 0.968 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.734 18.270 -1.978 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.073 4.073 3 C 0.093 3.907 4 N -0.165 5.165 5 C -0.443 4.443 6 H 0.127 0.873 7 C -0.172 4.172 8 N -0.512 5.512 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.193 1.193 13 C 0.246 3.754 14 O -0.455 6.455 15 C -0.172 4.172 16 C -0.086 4.086 17 C -0.150 4.150 18 C -0.085 4.085 19 N -0.257 5.257 20 C -0.130 4.130 21 C 0.216 3.784 22 F -0.188 7.188 23 F -0.177 7.177 24 C -0.067 4.067 25 C -0.150 4.150 26 H 0.142 0.858 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.053 0.947 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.388 18.135 -1.971 19.021 hybrid contribution 0.125 -1.156 -0.660 1.337 sum 5.514 16.979 -2.630 18.045 Atomic orbital electron populations 1.80894 1.13633 1.12253 1.08479 1.29354 0.95407 0.90100 0.92481 1.18726 0.81566 1.03471 0.86948 1.43690 1.56644 1.06657 1.09534 1.19718 1.31074 0.81037 1.12509 0.87342 1.25243 0.95016 0.99535 0.97364 1.69924 1.18831 1.29029 1.33397 0.85954 0.79391 0.80625 0.79068 1.20206 1.21213 1.19308 1.20170 0.83545 0.85202 0.86465 1.90489 1.50250 1.86672 1.18060 1.21668 1.02194 0.93858 0.99440 1.20867 0.96896 0.92547 0.98305 1.21666 1.00708 0.93754 0.98856 1.22450 0.86673 1.00690 0.98657 1.61949 1.16073 1.02485 1.45236 1.23205 1.03999 0.91056 0.94710 1.21977 0.73369 0.99078 0.84011 1.92898 1.38617 1.95506 1.91735 1.93002 1.71478 1.97086 1.56113 1.22154 0.99505 0.88745 0.96299 1.21751 0.95992 0.97968 0.99334 0.85757 0.89674 0.91711 0.90013 0.90508 0.91029 0.91045 0.91594 0.89339 0.94928 0.91752 0.88026 0.87405 0.94732 0.90959 0.91849 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.20 18.54 42.15 0.78 -10.42 16 2 C 0.24 5.37 13.00 -20.76 -0.27 5.10 16 3 C 0.22 4.31 4.91 -6.83 -0.03 4.27 16 4 N -0.44 -10.16 2.60 -117.93 -0.31 -10.47 16 5 C -0.32 -8.05 9.32 -14.93 -0.14 -8.19 16 6 H 0.11 2.93 7.40 -52.49 -0.39 2.54 16 7 C 0.03 0.79 4.78 -17.47 -0.08 0.71 16 8 N -0.87 -22.01 9.65 55.50 0.54 -21.48 16 9 Si 0.92 19.49 29.62 -169.99 -5.03 14.45 16 10 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 11 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 13 C 0.46 9.94 7.30 -10.99 -0.08 9.86 16 14 O -0.57 -14.08 13.63 5.54 0.08 -14.01 16 15 C -0.13 -2.19 3.78 -27.88 -0.11 -2.30 16 16 C -0.07 -1.03 1.89 -90.50 -0.17 -1.20 16 17 C -0.11 -1.45 5.38 -26.65 -0.14 -1.59 16 18 C 0.04 0.51 5.23 -3.84 -0.02 0.49 16 19 N -0.53 -6.20 4.40 -234.67 -1.03 -7.24 16 20 C 0.00 0.00 5.38 -3.83 -0.02 -0.02 16 21 C 0.27 2.20 5.58 37.16 0.21 2.41 16 22 F -0.21 -2.12 14.67 2.25 0.03 -2.08 16 23 F -0.20 -2.18 17.15 2.25 0.04 -2.14 16 24 C 0.06 0.75 5.42 -3.83 -0.02 0.73 16 25 C -0.11 -1.68 5.09 -26.65 -0.14 -1.81 16 26 H 0.12 2.49 6.48 -51.92 -0.34 2.16 16 27 H 0.09 1.27 6.68 -51.93 -0.35 0.92 16 28 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.08 1.17 7.41 -51.93 -0.39 0.79 16 30 H 0.08 1.29 7.51 -51.93 -0.39 0.90 16 31 H 0.07 1.25 7.95 -51.93 -0.41 0.83 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.04 5.45 -51.93 -0.28 0.76 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.48 7.99 -51.93 -0.41 0.07 16 37 H 0.10 0.69 7.78 -51.93 -0.40 0.28 16 38 H 0.11 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.80 7.93 -51.93 -0.41 0.39 16 41 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 42 H 0.10 1.68 6.04 -51.93 -0.31 1.37 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -30.87 344.45 -6.49 -37.37 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.76 Total: 2.37 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -1.02 Total: 8.45 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.02 Total: -49.60 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.08 Total: -14.01 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.07 Total: -4.23 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.87 -6.49 -37.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602087096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.604 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds