Wall clock time and date at job start Tue Mar 31 2020 10:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99738 * 2 1 4 4 H 1.48508 * 109.46953 * 270.00234 * 3 2 1 5 5 H 1.48494 * 109.47252 * 29.99858 * 3 2 1 6 6 H 1.48501 * 109.46822 * 150.00670 * 3 2 1 7 7 C 1.37879 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00012 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99773 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.46971 * 179.97438 * 9 7 2 11 11 O 1.42900 * 109.47485 * 179.97438 * 10 9 7 12 12 C 1.35899 * 117.00487 * 179.97438 * 11 10 9 13 13 C 1.38800 * 120.01693 * 0.31921 * 12 11 10 14 14 C 1.38175 * 120.08254 * 180.25501 * 13 12 11 15 15 C 1.38169 * 120.12110 * 359.44372 * 14 13 12 16 16 C 1.38884 * 120.04326 * 0.25875 * 15 14 13 17 17 N 1.39918 * 120.04467 * 179.97438 * 16 15 14 18 18 C 1.34778 * 119.99702 * 33.33173 * 17 16 15 19 19 O 1.21284 * 120.00289 * 5.27473 * 18 17 16 20 20 C 1.50705 * 119.99643 * 185.27626 * 18 17 16 21 21 H 1.08994 * 115.55744 * 34.26203 * 20 18 17 22 22 C 1.53120 * 117.50956 * 248.46288 * 20 18 17 23 23 C 1.52460 * 117.51224 * 180.02562 * 20 18 17 24 24 C 1.53259 * 128.58193 * 349.84453 * 23 20 18 25 25 C 1.53888 * 86.87890 * 194.88902 * 24 23 20 26 26 C 1.53249 * 128.58388 * 225.04990 * 23 20 18 27 27 C 1.38581 * 120.02093 * 179.97438 * 12 11 10 28 28 H 0.97003 * 119.99931 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47366 * 59.99398 * 9 7 2 30 30 H 1.08999 * 109.46685 * 299.99361 * 9 7 2 31 31 H 1.09003 * 109.47241 * 59.99900 * 10 9 7 32 32 H 1.09004 * 109.47253 * 299.99727 * 10 9 7 33 33 H 1.07999 * 119.96217 * 359.97438 * 13 12 11 34 34 H 1.08003 * 119.93914 * 179.72356 * 14 13 12 35 35 H 1.08007 * 119.97450 * 180.27161 * 15 14 13 36 36 H 0.96998 * 119.99590 * 213.33486 * 17 16 15 37 37 H 1.08996 * 117.51325 * 359.97438 * 22 20 18 38 38 H 1.09006 * 117.51430 * 145.10732 * 22 20 18 39 39 H 1.08994 * 113.64674 * 309.38790 * 24 23 20 40 40 H 1.09005 * 113.64274 * 80.39609 * 24 23 20 41 41 H 1.08999 * 113.59389 * 270.38984 * 25 24 23 42 42 H 1.09007 * 113.58705 * 139.57726 * 25 24 23 43 43 H 1.09004 * 113.64621 * 279.61037 * 26 23 20 44 44 H 1.09004 * 113.64851 * 50.51952 * 26 23 20 45 45 H 1.08005 * 120.06392 * 0.04159 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 8 5.4506 -2.6366 -0.0001 12 6 6.0676 -3.8474 0.0003 13 6 5.3120 -5.0117 -0.0059 14 6 5.9379 -6.2436 -0.0002 15 6 7.3174 -6.3204 0.0002 16 6 8.0785 -5.1587 0.0002 17 7 9.4755 -5.2364 0.0011 18 6 10.0945 -6.2479 -0.6395 19 8 9.4476 -7.0360 -1.2962 20 6 11.5906 -6.3994 -0.5397 21 1 12.0298 -6.1108 0.4151 22 6 12.4136 -6.1411 -1.8048 23 6 12.2320 -7.5631 -1.2873 24 6 11.5487 -8.7502 -1.9748 25 6 12.9324 -9.4233 -2.0009 26 6 13.3005 -8.5441 -0.7928 27 6 7.4514 -3.9204 -0.0003 28 1 -0.4850 0.8401 0.0004 29 1 3.8746 -0.6807 0.8904 30 1 3.8752 -0.6797 -0.8895 31 1 3.6586 -3.1501 -0.8903 32 1 3.6579 -3.1505 0.8897 33 1 4.2335 -4.9548 -0.0107 34 1 5.3477 -7.1481 -0.0005 35 1 7.8042 -7.2846 0.0003 36 1 9.9984 -4.5624 0.4628 37 1 11.8728 -5.8619 -2.7090 38 1 13.3947 -5.6821 -1.6823 39 1 10.8245 -9.2639 -1.3427 40 1 11.1578 -8.5161 -2.9651 41 1 13.5105 -9.1977 -2.8970 42 1 12.9035 -10.4888 -1.7723 43 1 14.3139 -8.1447 -0.8353 44 1 13.0645 -8.9992 0.1691 45 1 8.0410 -3.0155 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610735784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:30 Heat of formation + Delta-G solvation = -3.473300 kcal Electronic energy + Delta-G solvation = -24673.509448 eV Core-core repulsion = 21043.750593 eV Total energy + Delta-G solvation = -3629.758855 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.03444 -39.88128 -38.87532 -37.08788 -34.66538 -34.06834 -33.33453 -31.14801 -29.98634 -29.04601 -26.05735 -25.51237 -24.75281 -23.46922 -22.67302 -22.06221 -20.57338 -20.23935 -18.86665 -18.21493 -17.58193 -16.80496 -16.20450 -15.72505 -15.63925 -15.57578 -15.47395 -15.39609 -14.91735 -14.52043 -14.13634 -13.55927 -13.20434 -13.14179 -12.94068 -12.73676 -12.56332 -12.45234 -11.98997 -11.95959 -11.85897 -11.77095 -11.53506 -10.94062 -10.79852 -10.73541 -10.51279 -10.36777 -10.23030 -10.18920 -9.98866 -9.90370 -9.79175 -9.35629 -8.63561 -8.37953 -7.83345 -6.14498 -4.15484 1.26520 1.62137 2.25739 2.66944 3.27496 3.30715 3.34752 3.39808 3.75357 3.90541 3.97048 4.17736 4.29838 4.36842 4.37915 4.49329 4.60486 4.96412 4.97722 5.11422 5.19512 5.22823 5.30809 5.31351 5.32029 5.42799 5.45441 5.50758 5.51733 5.61367 5.74379 5.78280 5.90950 5.91340 5.93178 6.03673 6.25540 6.31610 6.40524 6.52381 6.64975 6.88995 7.09124 7.19203 7.21621 7.61060 7.87770 7.89933 8.37681 8.86317 9.45640 10.97968 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.035954 B = 0.001997 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.578203 B =14019.272501 C =14519.297891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.072 3.928 11 O -0.319 6.319 12 C 0.163 3.837 13 C -0.222 4.222 14 C -0.061 4.061 15 C -0.168 4.168 16 C 0.179 3.821 17 N -0.669 5.669 18 C 0.543 3.457 19 O -0.511 6.511 20 C -0.182 4.182 21 H 0.126 0.874 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.084 4.084 25 C -0.142 4.142 26 C -0.099 4.099 27 C -0.189 4.189 28 H 0.266 0.734 29 H 0.028 0.972 30 H 0.023 0.977 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.411 0.589 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.532 -16.200 -0.357 32.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.046 4.046 10 C -0.002 4.002 11 O -0.232 6.232 12 C 0.115 3.885 13 C -0.242 4.242 14 C -0.080 4.080 15 C -0.188 4.188 16 C 0.085 3.915 17 N -0.314 5.314 18 C 0.331 3.669 19 O -0.385 6.385 20 C -0.203 4.203 21 H 0.144 0.856 22 C -0.158 4.158 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.180 4.180 26 C -0.136 4.136 27 C -0.210 4.210 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.246 0.754 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 28.022 -16.478 -0.829 32.519 hybrid contribution 0.299 1.317 0.348 1.395 sum 28.322 -15.161 -0.481 32.128 Atomic orbital electron populations 1.69897 1.06264 1.27212 1.50150 1.24938 0.94767 0.99205 0.94118 0.86754 0.80432 0.83293 0.78761 1.20063 1.21169 1.18776 1.20841 0.88321 0.94962 1.52376 0.90707 1.19586 0.96932 0.90235 0.97885 1.23103 0.74445 1.01961 1.00661 1.86106 1.24149 1.25775 1.87169 1.18757 0.91468 0.85281 0.92991 1.21411 1.00885 0.92213 1.09654 1.20797 0.93824 0.97116 0.96261 1.20889 0.93606 0.97567 1.06775 1.17281 0.81975 0.93281 0.98986 1.43445 1.05122 1.28759 1.54034 1.19776 0.88592 0.80372 0.78184 1.90727 1.66684 1.42178 1.38915 1.22138 0.91183 1.07809 0.99167 0.85604 1.22827 1.00527 0.96654 0.95757 1.22334 0.99858 0.89031 1.01301 1.22354 0.95696 0.93360 1.00708 1.22814 0.97761 0.99059 0.98332 1.22517 0.97075 0.95361 0.98633 1.19969 0.92304 0.96617 1.12132 0.92443 0.95414 0.95840 0.92406 0.92361 0.84893 0.85644 0.85199 0.75354 0.87842 0.87376 0.89317 0.91118 0.90086 0.91139 0.91169 0.89518 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.53 -14.83 9.66 -34.44 -0.33 -15.17 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.22 4.41 -27.89 -0.12 -0.34 16 10 C 0.07 1.49 4.68 37.15 0.17 1.66 16 11 O -0.32 -6.20 10.13 -19.42 -0.20 -6.39 16 12 C 0.16 2.75 6.68 -39.25 -0.26 2.49 16 13 C -0.22 -3.48 9.04 -39.40 -0.36 -3.84 16 14 C -0.06 -0.85 10.03 -39.63 -0.40 -1.25 16 15 C -0.17 -2.36 8.65 -39.37 -0.34 -2.70 16 16 C 0.18 2.39 6.28 -83.72 -0.53 1.86 16 17 N -0.67 -6.79 5.34 -9.88 -0.05 -6.85 16 18 C 0.54 5.81 7.35 -10.98 -0.08 5.73 16 19 O -0.51 -7.15 12.82 5.55 0.07 -7.08 16 20 C -0.18 -1.34 6.20 -91.98 -0.57 -1.91 16 21 H 0.13 0.65 8.14 -51.93 -0.42 0.22 16 22 C -0.12 -0.78 10.23 -26.97 -0.28 -1.06 16 23 C -0.12 -0.92 2.87 -154.82 -0.44 -1.36 16 24 C -0.08 -0.70 6.47 -26.13 -0.17 -0.87 16 25 C -0.14 -0.86 8.08 -25.81 -0.21 -1.06 16 26 C -0.10 -0.56 8.10 -26.14 -0.21 -0.77 16 27 C -0.19 -2.76 9.90 -39.25 -0.39 -3.15 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 29 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 30 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 31 H 0.06 1.15 7.65 -51.93 -0.40 0.76 16 32 H 0.06 1.15 7.67 -51.93 -0.40 0.75 16 33 H 0.13 2.04 6.29 -52.49 -0.33 1.71 16 34 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.13 1.81 6.41 -52.48 -0.34 1.47 16 36 H 0.41 2.83 8.82 -40.82 -0.36 2.47 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.83 8.05 -51.93 -0.42 0.41 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.38 8.14 -51.92 -0.42 -0.05 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -32.61 371.79 -9.90 -42.51 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.82 Total: 1.54 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -4.61 Total: -19.74 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.72 Total: -33.30 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.13 Total: -13.47 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.61 -9.90 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610735784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.042 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds