Wall clock time and date at job start Tue Mar 31 2020 11:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38260 * 120.00048 * 2 1 4 4 C 1.38210 * 119.99646 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.99632 * 179.97438 * 4 3 2 6 6 F 1.39901 * 109.47254 * 90.00266 * 5 4 3 7 7 F 1.39907 * 109.46991 * 209.99910 * 5 4 3 8 8 F 1.39902 * 109.47350 * 329.99617 * 5 4 3 9 9 C 1.38256 * 120.00582 * 359.97438 * 4 3 2 10 10 C 1.38216 * 119.99419 * 359.75099 * 9 4 3 11 11 C 1.38219 * 120.00145 * 179.97438 * 2 1 3 12 12 C 1.50699 * 119.99729 * 0.02562 * 11 2 1 13 13 N 1.46897 * 109.47108 * 78.04001 * 12 11 2 14 14 C 1.46896 * 111.00082 * 73.52101 * 13 12 11 15 15 C 1.50702 * 109.47241 * 197.59825 * 14 13 12 16 16 H 1.07997 * 119.99865 * 355.35950 * 15 14 13 17 17 C 1.37877 * 120.00208 * 175.35841 * 15 14 13 18 18 N 1.31516 * 119.99796 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00231 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47066 * 60.00183 * 19 17 15 21 21 H 1.48503 * 109.47233 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47016 * 300.00108 * 19 17 15 23 23 C 1.46908 * 110.99997 * 197.47458 * 13 12 11 24 24 C 1.53001 * 109.46978 * 307.96431 * 23 13 12 25 25 C 1.52999 * 109.46914 * 67.96821 * 23 13 12 26 26 H 1.08997 * 109.47593 * 273.92096 * 1 2 3 27 27 H 1.09006 * 109.47249 * 33.92204 * 1 2 3 28 28 H 1.09005 * 109.47221 * 153.92039 * 1 2 3 29 29 H 1.07996 * 119.99941 * 359.97438 * 3 2 1 30 30 H 1.08006 * 120.00105 * 179.97438 * 9 4 3 31 31 H 1.08004 * 119.99320 * 180.27186 * 10 9 4 32 32 H 1.09004 * 109.47135 * 318.04335 * 12 11 2 33 33 H 1.08995 * 109.47208 * 198.04145 * 12 11 2 34 34 H 1.08995 * 109.47326 * 317.59595 * 14 13 12 35 35 H 1.08997 * 109.47424 * 77.59711 * 14 13 12 36 36 H 0.96999 * 119.99997 * 179.97438 * 18 17 15 37 37 H 1.09005 * 109.46807 * 187.96660 * 23 13 12 38 38 H 1.08999 * 109.46610 * 65.08418 * 24 23 13 39 39 H 1.08996 * 109.46874 * 185.07958 * 24 23 13 40 40 H 1.08993 * 109.47048 * 305.08614 * 24 23 13 41 41 H 1.09002 * 109.47598 * 63.82021 * 25 23 13 42 42 H 1.09008 * 109.46837 * 183.82376 * 25 23 13 43 43 H 1.08996 * 109.47057 * 303.81753 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.3339 2.5024 0.0000 6 9 4.5666 2.9071 1.3188 7 9 5.5566 2.3346 -0.6590 8 9 3.5781 3.4770 -0.6606 9 6 4.2717 0.0000 0.0016 10 6 3.5805 -1.1970 0.0073 11 6 2.1981 -1.1970 0.0005 12 6 1.4446 -2.5021 0.0005 13 7 0.9517 -2.7829 -1.3545 14 6 2.0495 -3.1959 -2.2389 15 6 1.6160 -3.0581 -3.6757 16 1 0.6010 -2.7718 -3.9084 17 6 2.5152 -3.2977 -4.6931 18 7 3.7511 -3.6469 -4.4097 19 14 1.9781 -3.1263 -6.4739 20 1 1.5191 -1.7358 -6.7209 21 1 3.1224 -3.4365 -7.3682 22 1 0.8657 -4.0709 -6.7485 23 6 -0.1125 -3.7953 -1.3283 24 6 0.3688 -5.0211 -0.5493 25 6 -1.3533 -3.2134 -0.6481 26 1 -0.3634 0.0703 1.0252 27 1 -0.3634 0.8528 -0.5735 28 1 -0.3634 -0.9231 -0.4518 29 1 1.6583 2.1326 -0.0004 30 1 5.3518 0.0000 0.0016 31 1 4.1206 -2.1323 0.0126 32 1 0.6008 -2.4344 0.6873 33 1 2.1090 -3.3052 0.3192 34 1 2.9185 -2.5629 -2.0594 35 1 2.3087 -4.2349 -2.0356 36 1 4.3836 -3.8158 -5.1254 37 1 -0.3609 -4.0877 -2.3486 38 1 0.5311 -4.7481 0.4934 39 1 -0.3848 -5.8065 -0.6062 40 1 1.3028 -5.3816 -0.9801 41 1 -1.7360 -2.3819 -1.2400 42 1 -2.1191 -3.9850 -0.5677 43 1 -1.0888 -2.8589 0.3481 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615504150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:21 Heat of formation + Delta-G solvation = -132.846888 kcal Electronic energy + Delta-G solvation = -27308.953442 eV Core-core repulsion = 23131.727787 eV Total energy + Delta-G solvation = -4177.225655 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.151 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.04486 -47.55105 -47.52218 -39.70609 -37.57096 -33.26461 -32.83672 -32.13271 -30.39680 -27.96276 -27.07320 -26.51455 -25.80598 -23.83172 -22.22536 -21.91503 -20.67088 -18.80376 -18.38362 -18.24619 -17.83223 -16.31189 -15.94660 -15.45147 -14.79006 -14.69966 -14.40189 -14.30698 -14.13208 -13.97077 -13.94344 -13.72819 -13.67908 -13.58765 -13.32395 -12.95330 -12.85093 -12.52293 -12.20275 -12.02585 -11.91231 -11.76198 -11.53273 -11.40869 -11.07550 -10.89888 -10.75388 -10.69461 -10.65313 -10.43336 -10.14554 -9.77764 -9.23755 -8.71522 -8.46627 -8.40596 -7.29276 -6.02281 -4.02465 1.19499 1.54579 2.80157 3.33182 3.37816 3.40469 3.67711 3.87444 4.17071 4.42898 4.56060 4.85026 4.98680 5.05367 5.21673 5.34497 5.40664 5.43693 5.50076 5.64390 5.72669 5.78755 5.85633 5.87687 5.93098 5.99484 6.06782 6.11439 6.15680 6.22719 6.38071 6.38928 6.46843 6.60462 6.66265 6.77184 6.88839 7.06812 7.25285 7.35023 7.79531 8.08779 8.17974 8.51340 9.03677 9.61074 11.08324 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.011386 B = 0.004745 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.530026 B = 5899.814596 C = 7319.257906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.078 4.078 4 C -0.190 4.190 5 C 0.510 3.490 6 F -0.182 7.182 7 F -0.178 7.178 8 F -0.180 7.180 9 C -0.077 4.077 10 C -0.103 4.103 11 C -0.026 4.026 12 C 0.082 3.918 13 N -0.521 5.521 14 C 0.188 3.812 15 C -0.502 4.502 16 H 0.061 0.939 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.080 3.920 24 C -0.182 4.182 25 C -0.144 4.144 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.037 0.963 35 H -0.006 1.006 36 H 0.261 0.739 37 H 0.092 0.908 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.613 6.600 12.365 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.064 4.064 3 C -0.097 4.097 4 C -0.192 4.192 5 C 0.456 3.544 6 F -0.164 7.164 7 F -0.160 7.160 8 F -0.161 7.161 9 C -0.095 4.095 10 C -0.122 4.122 11 C -0.027 4.027 12 C -0.046 4.046 13 N -0.245 5.245 14 C 0.063 3.937 15 C -0.541 4.541 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.029 4.029 24 C -0.241 4.241 25 C -0.201 4.201 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.011 0.989 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.624 7.015 12.075 14.427 hybrid contribution 0.557 -0.399 -0.852 1.093 sum -3.067 6.616 11.223 13.384 Atomic orbital electron populations 1.20981 0.90577 1.04959 1.01438 1.19639 0.96595 0.91486 0.98691 1.20697 0.91869 0.98703 0.98385 1.19785 0.94928 0.91599 1.12868 1.18380 0.77383 0.85234 0.73426 1.93194 1.94788 1.91928 1.36461 1.93185 1.46043 1.95561 1.81194 1.93172 1.75995 1.65802 1.81159 1.20785 1.00069 0.91098 0.97570 1.21068 0.93843 0.97793 0.99482 1.19994 0.93278 0.95245 0.94153 1.21102 0.97522 0.92212 0.93746 1.62370 1.13036 1.43004 1.06044 1.19837 0.88515 0.94231 0.91077 1.21074 0.97344 1.45570 0.90127 0.92106 1.24944 0.94884 0.95524 0.99111 1.69930 1.03811 1.47485 1.32590 0.86618 0.77915 0.78614 0.84603 1.20242 1.21427 1.20349 1.21624 0.91571 0.89558 1.00161 1.22461 1.02133 0.99510 1.00002 1.21945 0.97326 1.00755 1.00119 0.91972 0.91818 0.88493 0.85373 0.85257 0.85103 0.90474 0.94426 0.94543 0.98851 0.92953 0.88998 0.93486 0.93154 0.91951 0.92142 0.93163 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.38 36.00 0.34 -1.27 16 2 C -0.06 -0.97 5.88 -104.62 -0.62 -1.59 16 3 C -0.08 -1.15 9.07 -39.58 -0.36 -1.51 16 4 C -0.19 -2.88 5.45 -104.62 -0.57 -3.45 16 5 C 0.51 7.25 3.36 36.01 0.12 7.37 16 6 F -0.18 -2.48 17.30 2.25 0.04 -2.44 16 7 F -0.18 -2.64 16.46 2.25 0.04 -2.60 16 8 F -0.18 -2.57 16.46 2.25 0.04 -2.54 16 9 C -0.08 -1.19 9.40 -39.58 -0.37 -1.56 16 10 C -0.10 -1.69 8.59 -39.59 -0.34 -2.03 16 11 C -0.03 -0.43 4.84 -104.63 -0.51 -0.93 16 12 C 0.08 1.33 2.86 -4.98 -0.01 1.31 16 13 N -0.52 -9.97 3.61 -229.52 -0.83 -10.80 16 14 C 0.19 4.55 4.47 -4.98 -0.02 4.53 16 15 C -0.50 -13.57 8.54 -34.44 -0.29 -13.87 16 16 H 0.06 1.64 7.56 -52.49 -0.40 1.24 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.08 1.35 2.81 -67.71 -0.19 1.16 16 24 C -0.18 -2.83 8.40 37.16 0.31 -2.52 16 25 C -0.14 -1.94 8.01 37.16 0.30 -1.64 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 28 H 0.10 1.37 3.94 -51.93 -0.20 1.17 16 29 H 0.13 1.62 7.60 -52.49 -0.40 1.23 16 30 H 0.13 1.77 7.60 -52.48 -0.40 1.37 16 31 H 0.13 2.06 8.02 -52.48 -0.42 1.64 16 32 H 0.08 1.08 5.15 -51.93 -0.27 0.81 16 33 H 0.04 0.62 7.16 -51.93 -0.37 0.24 16 34 H 0.04 0.96 6.36 -51.93 -0.33 0.63 16 35 H -0.01 -0.16 6.26 -51.93 -0.33 -0.48 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.09 1.79 7.13 -51.93 -0.37 1.42 16 38 H 0.05 0.65 7.00 -51.93 -0.36 0.29 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.12 6.41 -51.93 -0.33 0.78 16 41 H 0.06 0.83 7.69 -51.93 -0.40 0.43 16 42 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 43 H 0.05 0.61 5.96 -51.93 -0.31 0.30 16 LS Contribution 349.20 15.07 5.26 5.26 Total: -1.00 -28.62 349.20 -7.76 -36.38 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.71 Total: 0.13 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -2.31 Total: -14.51 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.09 Total: -36.19 kcal Atomic # 9 Polarization: -7.69 SS G_CDS: 0.11 Total: -7.58 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.62 -7.76 -36.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615504150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.466 kcal (2) G-P(sol) polarization free energy of solvation -28.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds