Wall clock time and date at job start Tue Mar 31 2020 11:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38260 * 120.00048 * 2 1 4 4 C 1.38210 * 119.99646 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.99632 * 179.97438 * 4 3 2 6 6 F 1.39901 * 109.47254 * 90.00266 * 5 4 3 7 7 F 1.39907 * 109.46991 * 209.99910 * 5 4 3 8 8 F 1.39902 * 109.47350 * 329.99617 * 5 4 3 9 9 C 1.38256 * 120.00582 * 359.97438 * 4 3 2 10 10 C 1.38216 * 119.99419 * 359.75099 * 9 4 3 11 11 C 1.38219 * 120.00145 * 179.97438 * 2 1 3 12 12 C 1.50699 * 119.99729 * 0.02562 * 11 2 1 13 13 N 1.46897 * 109.47108 * 78.04001 * 12 11 2 14 14 C 1.46896 * 111.00082 * 73.52101 * 13 12 11 15 15 C 1.50702 * 109.47241 * 197.59825 * 14 13 12 16 16 H 1.07997 * 119.99865 * 355.35950 * 15 14 13 17 17 C 1.37877 * 120.00208 * 175.35841 * 15 14 13 18 18 N 1.31516 * 119.99796 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00231 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47066 * 60.00183 * 19 17 15 21 21 H 1.48503 * 109.47233 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47016 * 300.00108 * 19 17 15 23 23 C 1.46908 * 110.99997 * 197.47458 * 13 12 11 24 24 C 1.53001 * 109.46978 * 307.96431 * 23 13 12 25 25 C 1.52999 * 109.46914 * 67.96821 * 23 13 12 26 26 H 1.08997 * 109.47593 * 273.92096 * 1 2 3 27 27 H 1.09006 * 109.47249 * 33.92204 * 1 2 3 28 28 H 1.09005 * 109.47221 * 153.92039 * 1 2 3 29 29 H 1.07996 * 119.99941 * 359.97438 * 3 2 1 30 30 H 1.08006 * 120.00105 * 179.97438 * 9 4 3 31 31 H 1.08004 * 119.99320 * 180.27186 * 10 9 4 32 32 H 1.09004 * 109.47135 * 318.04335 * 12 11 2 33 33 H 1.08995 * 109.47208 * 198.04145 * 12 11 2 34 34 H 1.08995 * 109.47326 * 317.59595 * 14 13 12 35 35 H 1.08997 * 109.47424 * 77.59711 * 14 13 12 36 36 H 0.96999 * 119.99997 * 179.97438 * 18 17 15 37 37 H 1.09005 * 109.46807 * 187.96660 * 23 13 12 38 38 H 1.08999 * 109.46610 * 65.08418 * 24 23 13 39 39 H 1.08996 * 109.46874 * 185.07958 * 24 23 13 40 40 H 1.08993 * 109.47048 * 305.08614 * 24 23 13 41 41 H 1.09002 * 109.47598 * 63.82021 * 25 23 13 42 42 H 1.09008 * 109.46837 * 183.82376 * 25 23 13 43 43 H 1.08996 * 109.47057 * 303.81753 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.3339 2.5024 0.0000 6 9 4.5666 2.9071 1.3188 7 9 5.5566 2.3346 -0.6590 8 9 3.5781 3.4770 -0.6606 9 6 4.2717 0.0000 0.0016 10 6 3.5805 -1.1970 0.0073 11 6 2.1981 -1.1970 0.0005 12 6 1.4446 -2.5021 0.0005 13 7 0.9517 -2.7829 -1.3545 14 6 2.0495 -3.1959 -2.2389 15 6 1.6160 -3.0581 -3.6757 16 1 0.6010 -2.7718 -3.9084 17 6 2.5152 -3.2977 -4.6931 18 7 3.7511 -3.6469 -4.4097 19 14 1.9781 -3.1263 -6.4739 20 1 1.5191 -1.7358 -6.7209 21 1 3.1224 -3.4365 -7.3682 22 1 0.8657 -4.0709 -6.7485 23 6 -0.1125 -3.7953 -1.3283 24 6 0.3688 -5.0211 -0.5493 25 6 -1.3533 -3.2134 -0.6481 26 1 -0.3634 0.0703 1.0252 27 1 -0.3634 0.8528 -0.5735 28 1 -0.3634 -0.9231 -0.4518 29 1 1.6583 2.1326 -0.0004 30 1 5.3518 0.0000 0.0016 31 1 4.1206 -2.1323 0.0126 32 1 0.6008 -2.4344 0.6873 33 1 2.1090 -3.3052 0.3192 34 1 2.9185 -2.5629 -2.0594 35 1 2.3087 -4.2349 -2.0356 36 1 4.3836 -3.8158 -5.1254 37 1 -0.3609 -4.0877 -2.3486 38 1 0.5311 -4.7481 0.4934 39 1 -0.3848 -5.8065 -0.6062 40 1 1.3028 -5.3816 -0.9801 41 1 -1.7360 -2.3819 -1.2400 42 1 -2.1191 -3.9850 -0.5677 43 1 -1.0888 -2.8589 0.3481 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615504150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:20 Heat of formation + Delta-G solvation = -146.737682 kcal Electronic energy + Delta-G solvation = -27309.555792 eV Core-core repulsion = 23131.727787 eV Total energy + Delta-G solvation = -4177.828005 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.151 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.18828 -48.70671 -48.64891 -40.94559 -38.97392 -34.90776 -34.40120 -33.36994 -31.87270 -29.54824 -28.22634 -27.66064 -27.36285 -25.25050 -23.88423 -23.20867 -21.87061 -20.22501 -19.52002 -19.40886 -18.98423 -18.32744 -17.33992 -16.78101 -16.43656 -16.12154 -15.69902 -15.50677 -15.39266 -15.22584 -15.10543 -14.86801 -14.83839 -14.82215 -14.78385 -14.22781 -14.09901 -13.95465 -13.70798 -13.24860 -13.20394 -12.98475 -12.92442 -12.76229 -12.63649 -12.53337 -12.37341 -12.10284 -12.02080 -11.87481 -11.62228 -11.37148 -11.18959 -10.54540 -9.95461 -9.63304 -8.87264 -8.14878 -6.22084 -0.02215 0.35069 1.40284 1.42519 1.49689 1.64457 2.40141 2.47880 2.71519 3.02057 3.17635 3.39688 3.47372 3.83084 3.89444 3.95603 4.16105 4.26354 4.31063 4.38968 4.53279 4.58558 4.61464 4.70728 4.85824 4.88269 4.89291 4.97215 4.97847 5.06401 5.12101 5.19370 5.26964 5.30835 5.34174 5.47886 5.49262 5.61198 5.68959 5.75089 5.89795 6.16047 6.50542 6.71318 6.93659 7.46005 8.94784 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.011386 B = 0.004745 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.530026 B = 5899.814596 C = 7319.257906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.068 4.068 3 C -0.081 4.081 4 C -0.196 4.196 5 C 0.516 3.484 6 F -0.177 7.177 7 F -0.183 7.183 8 F -0.178 7.178 9 C -0.086 4.086 10 C -0.120 4.120 11 C -0.046 4.046 12 C 0.087 3.913 13 N -0.522 5.522 14 C 0.206 3.794 15 C -0.512 4.512 16 H 0.058 0.942 17 C 0.004 3.996 18 N -0.933 5.933 19 Si 0.957 3.043 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.267 1.267 23 C 0.074 3.926 24 C -0.174 4.174 25 C -0.133 4.133 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.151 0.849 30 H 0.140 0.860 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.031 0.969 34 H 0.011 0.989 35 H -0.032 1.032 36 H 0.261 0.739 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.028 0.972 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.614 7.587 13.126 16.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.069 4.069 3 C -0.099 4.099 4 C -0.198 4.198 5 C 0.462 3.538 6 F -0.158 7.158 7 F -0.164 7.164 8 F -0.160 7.160 9 C -0.105 4.105 10 C -0.138 4.138 11 C -0.047 4.047 12 C -0.040 4.040 13 N -0.246 5.246 14 C 0.079 3.921 15 C -0.551 4.551 16 H 0.076 0.924 17 C -0.194 4.194 18 N -0.574 5.574 19 Si 0.782 3.218 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.035 4.035 24 C -0.233 4.233 25 C -0.190 4.190 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.168 0.832 30 H 0.158 0.842 31 H 0.142 0.858 32 H 0.125 0.875 33 H 0.049 0.951 34 H 0.029 0.971 35 H -0.015 1.015 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.649 8.002 12.851 16.158 hybrid contribution 1.177 -0.698 -1.033 1.715 sum -4.472 7.304 11.818 14.595 Atomic orbital electron populations 1.21023 0.88716 1.04751 1.03270 1.19958 0.98014 0.91082 0.97841 1.20991 0.91784 0.99522 0.97583 1.19955 0.95468 0.91781 1.12580 1.18209 0.77103 0.84895 0.73559 1.93205 1.94737 1.91834 1.36054 1.93179 1.46311 1.95583 1.81337 1.93174 1.75948 1.65677 1.81184 1.20938 1.00771 0.91072 0.97674 1.21158 0.94346 0.98021 1.00303 1.20135 0.93385 0.95898 0.95269 1.21129 0.98426 0.92040 0.92385 1.62248 1.11669 1.43440 1.07216 1.19415 0.89333 0.92106 0.91200 1.21429 0.97127 1.44719 0.91775 0.92375 1.25765 0.94940 0.95394 1.03320 1.70060 1.04874 1.48765 1.33686 0.85628 0.77713 0.78761 0.79678 1.19825 1.21242 1.19246 1.21702 0.92465 0.90010 0.99291 1.22368 1.00961 0.99440 1.00523 1.21848 0.95630 1.01161 1.00349 0.89171 0.90896 0.89624 0.83154 0.84234 0.85792 0.87543 0.95103 0.97064 1.01453 0.93065 0.92194 0.91501 0.91112 0.95325 0.92375 0.90997 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.80 9.38 71.24 0.67 -2.14 16 2 C -0.07 -1.98 5.88 -19.86 -0.12 -2.10 16 3 C -0.08 -2.24 9.07 22.27 0.20 -2.03 16 4 C -0.20 -5.76 5.45 -19.87 -0.11 -5.87 16 5 C 0.52 14.06 3.36 71.24 0.24 14.30 16 6 F -0.18 -4.56 17.30 44.97 0.78 -3.78 16 7 F -0.18 -5.26 16.46 44.97 0.74 -4.52 16 8 F -0.18 -4.81 16.46 44.97 0.74 -4.07 16 9 C -0.09 -2.68 9.40 22.27 0.21 -2.47 16 10 C -0.12 -4.00 8.59 22.27 0.19 -3.81 16 11 C -0.05 -1.50 4.84 -19.87 -0.10 -1.60 16 12 C 0.09 2.77 2.86 85.56 0.25 3.02 16 13 N -0.52 -20.02 3.61 -880.07 -3.17 -23.19 16 14 C 0.21 10.32 4.47 85.56 0.38 10.70 16 15 C -0.51 -28.29 8.54 25.60 0.22 -28.08 16 16 H 0.06 3.17 7.56 -2.91 -0.02 3.15 16 17 C 0.00 0.20 5.46 84.65 0.46 0.66 16 18 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 19 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 C 0.07 2.46 2.81 44.91 0.13 2.58 16 24 C -0.17 -5.28 8.40 71.98 0.60 -4.67 16 25 C -0.13 -3.19 8.01 71.98 0.58 -2.61 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 1.55 8.11 -2.38 -0.02 1.53 16 28 H 0.09 2.19 3.94 -2.38 -0.01 2.18 16 29 H 0.15 3.40 7.60 -2.91 -0.02 3.38 16 30 H 0.14 3.87 7.60 -2.91 -0.02 3.85 16 31 H 0.12 4.16 8.02 -2.91 -0.02 4.14 16 32 H 0.11 2.71 5.15 -2.39 -0.01 2.70 16 33 H 0.03 1.02 7.16 -2.39 -0.02 1.00 16 34 H 0.01 0.62 6.36 -2.39 -0.02 0.60 16 35 H -0.03 -1.75 6.26 -2.39 -0.01 -1.76 16 36 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 37 H 0.06 2.37 7.13 -2.38 -0.02 2.35 16 38 H 0.07 1.74 7.00 -2.39 -0.02 1.72 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.03 1.04 6.41 -2.39 -0.02 1.03 16 41 H 0.06 1.44 7.69 -2.39 -0.02 1.42 16 42 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.07 1.38 5.96 -2.39 -0.01 1.37 16 Total: -1.00 -62.72 349.20 6.23 -56.49 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 1.03 Total: 12.13 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 3.80 Total: -24.11 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -2.89 Total: -78.70 kcal Atomic # 9 Polarization: -14.63 SS G_CDS: 2.26 Total: -12.37 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -62.72 6.23 -56.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615504150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.250 kcal (2) G-P(sol) polarization free energy of solvation -62.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds