Wall clock time and date at job start Tue Mar 31 2020 10:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47543 * 340.09771 * 3 2 1 5 5 N 1.46492 * 109.47534 * 179.97438 * 4 3 2 6 6 C 1.46505 * 120.00079 * 270.00270 * 5 4 3 7 7 C 1.50693 * 109.47047 * 269.99869 * 6 5 4 8 8 H 1.07996 * 120.00394 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99976 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00138 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99646 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47367 * 90.00377 * 11 9 7 13 13 H 1.48508 * 109.46920 * 210.00235 * 11 9 7 14 14 H 1.48500 * 109.47570 * 329.99644 * 11 9 7 15 15 C 1.34778 * 119.99961 * 89.99877 * 5 4 3 16 16 O 1.21282 * 119.99865 * 179.97438 * 15 5 4 17 17 C 1.50700 * 120.00099 * 0.02562 * 15 5 4 18 18 N 1.46895 * 109.47354 * 179.97438 * 17 15 5 19 19 C 1.46847 * 110.99982 * 169.99549 * 18 17 15 20 20 C 1.53034 * 109.51345 * 185.84805 * 19 18 17 21 21 C 1.53123 * 109.27992 * 300.80438 * 20 19 18 22 22 F 1.39899 * 109.53060 * 297.77080 * 21 20 19 23 23 F 1.39901 * 109.52524 * 177.57221 * 21 20 19 24 24 C 1.53127 * 109.15019 * 57.67185 * 21 20 19 25 25 C 1.46843 * 110.99970 * 294.20914 * 18 17 15 26 26 H 1.09003 * 109.46987 * 220.10124 * 3 2 1 27 27 H 1.09001 * 109.47196 * 100.10215 * 3 2 1 28 28 H 1.09001 * 109.46180 * 60.00085 * 4 3 2 29 29 H 1.08998 * 109.46744 * 300.00538 * 4 3 2 30 30 H 1.08997 * 109.46727 * 30.00130 * 6 5 4 31 31 H 1.09002 * 109.46704 * 149.99775 * 6 5 4 32 32 H 0.97001 * 119.99928 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.46915 * 59.99330 * 17 15 5 34 34 H 1.09003 * 109.46819 * 299.99801 * 17 15 5 35 35 H 1.09002 * 109.46481 * 305.85957 * 19 18 17 36 36 H 1.08994 * 109.46283 * 65.83811 * 19 18 17 37 37 H 1.08997 * 109.50952 * 60.75924 * 20 19 18 38 38 H 1.08998 * 109.50459 * 180.87821 * 20 19 18 39 39 H 1.08997 * 109.49981 * 182.39822 * 24 21 20 40 40 H 1.08998 * 109.53089 * 62.30397 * 24 21 20 41 41 H 1.08993 * 109.46313 * 294.17341 * 25 18 17 42 42 H 1.09000 * 109.46480 * 54.15451 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3555 0.4911 5 7 4.5836 -1.3550 0.4905 6 6 5.3158 -1.7868 -0.7028 7 6 5.5675 -3.2707 -0.6281 8 1 5.2167 -3.8358 0.2228 9 6 6.2455 -3.9071 -1.6461 10 7 6.4647 -5.2021 -1.5812 11 14 6.8528 -2.9296 -3.1175 12 1 8.2261 -2.4324 -2.8490 13 1 6.8685 -3.8021 -4.3191 14 1 5.9466 -1.7772 -3.3545 15 6 5.2578 -0.9573 1.5876 16 8 6.4706 -0.9574 1.5873 17 6 4.5047 -0.5136 2.8152 18 7 5.4595 -0.1335 3.8648 19 6 4.7755 0.5248 4.9852 20 6 5.8124 1.0352 5.9883 21 6 6.6466 -0.1437 6.4972 22 9 5.8168 -1.0494 7.1667 23 9 7.6323 0.3243 7.3727 24 6 7.3095 -0.8413 5.3060 25 6 6.2293 -1.2972 4.3224 26 1 2.9709 0.7869 0.6620 27 1 2.9712 0.1811 -1.0117 28 1 2.7557 -2.1416 -0.1710 29 1 2.7554 -1.5358 1.5028 30 1 4.7263 -1.5625 -1.5917 31 1 6.2680 -1.2589 -0.7555 32 1 6.9421 -5.6497 -2.2972 33 1 3.8787 -1.3312 3.1727 34 1 3.8773 0.3425 2.5669 35 1 4.1891 1.3637 4.6104 36 1 4.1149 -0.1890 5.4772 37 1 6.4650 1.7593 5.5007 38 1 5.3040 1.5099 6.8275 39 1 7.8705 -1.7071 5.6576 40 1 7.9860 -0.1471 4.8076 41 1 5.5617 -2.0024 4.8174 42 1 6.6990 -1.7815 3.4663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796541313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:51 Heat of formation + Delta-G solvation = -99.061987 kcal Electronic energy + Delta-G solvation = -26933.330133 eV Core-core repulsion = 22777.489463 eV Total energy + Delta-G solvation = -4155.840670 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.06118 -47.06697 -39.85033 -38.09264 -36.91461 -35.35934 -33.10146 -32.58955 -31.33389 -31.05833 -28.75870 -26.68403 -24.12404 -23.79232 -23.46242 -21.99622 -20.22014 -18.62627 -17.80415 -17.53570 -17.07461 -16.89012 -16.60668 -16.31888 -15.99480 -15.42815 -15.02516 -14.74061 -14.59479 -14.31709 -13.95735 -13.85360 -13.66848 -13.40730 -13.19193 -12.88823 -12.69923 -12.68010 -12.55758 -12.46767 -12.40933 -12.18782 -11.98698 -11.66238 -11.52748 -11.52484 -11.26039 -11.11590 -10.90020 -10.60123 -10.42743 -10.24299 -9.64045 -9.18463 -8.66298 -8.39266 -7.95737 -6.15925 -4.15903 2.62435 2.71390 3.14357 3.22503 3.26367 3.30040 3.34289 3.61639 3.76546 3.96876 4.12124 4.20671 4.32665 4.34947 4.71852 4.83828 4.93561 4.97758 5.01008 5.11813 5.16437 5.18506 5.25915 5.30366 5.34444 5.41258 5.50905 5.57499 5.68359 5.70387 5.95632 5.96482 6.07296 6.51262 6.74543 6.85588 6.91642 7.14771 7.47538 7.51588 8.02739 8.37331 8.79021 8.87768 9.43619 10.97242 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.011440 B = 0.004060 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.023012 B = 6895.058546 C = 8733.413082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.215 3.785 3 C -0.051 4.051 4 C 0.116 3.884 5 N -0.593 5.593 6 C 0.216 3.784 7 C -0.532 4.532 8 H 0.075 0.925 9 C 0.074 3.926 10 N -0.895 5.895 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.265 1.265 15 C 0.511 3.489 16 O -0.514 6.514 17 C 0.034 3.966 18 N -0.522 5.522 19 C 0.055 3.945 20 C -0.151 4.151 21 C 0.282 3.718 22 F -0.203 7.203 23 F -0.204 7.204 24 C -0.150 4.150 25 C 0.049 3.951 26 H 0.107 0.893 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.032 0.968 31 H 0.040 0.960 32 H 0.265 0.735 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.039 0.961 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.882 13.143 11.788 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.103 4.103 3 C -0.092 4.092 4 C -0.010 4.010 5 N -0.325 5.325 6 C 0.096 3.904 7 C -0.571 4.571 8 H 0.093 0.907 9 C -0.129 4.129 10 N -0.533 5.533 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.297 3.703 16 O -0.388 6.388 17 C -0.096 4.096 18 N -0.246 5.246 19 C -0.073 4.073 20 C -0.190 4.190 21 C 0.246 3.754 22 F -0.184 7.184 23 F -0.185 7.185 24 C -0.188 4.188 25 C -0.079 4.079 26 H 0.125 0.875 27 H 0.134 0.866 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.062 0.938 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.057 0.943 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.483 13.297 11.513 18.151 hybrid contribution 0.184 -0.316 -0.295 0.470 sum -4.299 12.981 11.219 17.687 Atomic orbital electron populations 1.81226 1.13031 1.08566 1.09109 1.29064 0.95069 0.93182 0.92996 1.19900 0.81454 1.01651 1.06211 1.21338 0.81839 0.95034 1.02779 1.47891 1.04880 1.64392 1.15377 1.19717 0.92549 0.96456 0.81709 1.21289 1.37318 0.91029 1.07442 0.90734 1.24853 0.95187 0.94760 0.98091 1.69887 1.41174 1.08728 1.33560 0.86873 0.80173 0.80239 0.82500 1.19884 1.21148 1.18978 1.20155 0.88238 0.77999 0.83899 1.90661 1.13564 1.52784 1.81834 1.22080 0.94302 1.01314 0.91951 1.61616 1.25057 1.28211 1.09766 1.22060 0.94895 0.99322 0.91030 1.22547 0.99325 0.96901 1.00179 1.21290 0.81476 0.88020 0.84577 1.92987 1.73004 1.69596 1.82808 1.92998 1.63716 1.89331 1.72447 1.22556 0.99729 1.02662 0.93836 1.22279 0.94948 0.91191 0.99464 0.87457 0.86606 0.88468 0.90431 0.95022 0.94182 0.92485 0.91806 0.88091 0.89223 0.93787 0.87754 0.89222 0.89106 0.87661 0.94308 0.86517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.02 18.54 42.15 0.78 -5.24 16 2 C 0.22 2.30 15.43 -20.76 -0.32 1.98 16 3 C -0.05 -0.44 6.03 -29.52 -0.18 -0.62 16 4 C 0.12 1.36 5.17 -4.04 -0.02 1.34 16 5 N -0.59 -9.71 2.46 -175.06 -0.43 -10.14 16 6 C 0.22 4.53 4.23 -5.19 -0.02 4.50 16 7 C -0.53 -13.89 9.94 -34.44 -0.34 -14.23 16 8 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 9 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 10 N -0.90 -26.31 13.96 55.43 0.77 -25.54 16 11 Si 0.88 20.14 27.47 -169.99 -4.67 15.47 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.27 -5.60 6.54 56.52 0.37 -5.23 16 15 C 0.51 8.39 7.35 -10.98 -0.08 8.31 16 16 O -0.51 -10.65 13.90 5.56 0.08 -10.57 16 17 C 0.03 0.40 4.00 -4.98 -0.02 0.38 16 18 N -0.52 -6.22 4.40 -236.12 -1.04 -7.26 16 19 C 0.06 0.50 5.35 -3.84 -0.02 0.48 16 20 C -0.15 -1.34 5.62 -26.65 -0.15 -1.49 16 21 C 0.28 3.15 2.12 -26.60 -0.06 3.09 16 22 F -0.20 -2.54 16.22 2.25 0.04 -2.50 16 23 F -0.20 -2.48 17.07 2.25 0.04 -2.44 16 24 C -0.15 -1.74 5.62 -26.64 -0.15 -1.89 16 25 C 0.05 0.64 4.99 -3.83 -0.02 0.62 16 26 H 0.11 0.69 7.22 -51.93 -0.38 0.32 16 27 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.10 1.26 8.07 -51.93 -0.42 0.84 16 29 H 0.08 0.75 6.44 -51.93 -0.33 0.42 16 30 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 31 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 32 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.06 0.68 7.38 -51.93 -0.38 0.30 16 34 H 0.10 0.84 7.03 -51.93 -0.37 0.48 16 35 H 0.09 0.63 8.02 -51.93 -0.42 0.21 16 36 H 0.04 0.40 7.87 -51.93 -0.41 -0.01 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.04 0.50 7.87 -51.93 -0.41 0.09 16 42 H 0.12 1.93 5.78 -51.93 -0.30 1.63 16 LS Contribution 352.83 15.07 5.32 5.32 Total: -1.00 -33.04 352.83 -6.43 -39.47 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.84 Total: -0.98 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.48 Total: 4.40 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.09 Total: -48.17 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.07 Total: -4.94 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.67 Total: 15.47 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.04 -6.43 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796541313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.596 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds