Wall clock time and date at job start Tue Mar 31 2020 10:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47543 * 340.09771 * 3 2 1 5 5 N 1.46492 * 109.47534 * 179.97438 * 4 3 2 6 6 C 1.46505 * 120.00079 * 270.00270 * 5 4 3 7 7 C 1.50693 * 109.47047 * 269.99869 * 6 5 4 8 8 H 1.07996 * 120.00394 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99976 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00138 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99646 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47367 * 90.00377 * 11 9 7 13 13 H 1.48508 * 109.46920 * 210.00235 * 11 9 7 14 14 H 1.48500 * 109.47570 * 329.99644 * 11 9 7 15 15 C 1.34778 * 119.99961 * 89.99877 * 5 4 3 16 16 O 1.21282 * 119.99865 * 179.97438 * 15 5 4 17 17 C 1.50700 * 120.00099 * 0.02562 * 15 5 4 18 18 N 1.46895 * 109.47354 * 179.97438 * 17 15 5 19 19 C 1.46847 * 110.99982 * 169.99549 * 18 17 15 20 20 C 1.53034 * 109.51345 * 185.84805 * 19 18 17 21 21 C 1.53123 * 109.27992 * 300.80438 * 20 19 18 22 22 F 1.39899 * 109.53060 * 297.77080 * 21 20 19 23 23 F 1.39901 * 109.52524 * 177.57221 * 21 20 19 24 24 C 1.53127 * 109.15019 * 57.67185 * 21 20 19 25 25 C 1.46843 * 110.99970 * 294.20914 * 18 17 15 26 26 H 1.09003 * 109.46987 * 220.10124 * 3 2 1 27 27 H 1.09001 * 109.47196 * 100.10215 * 3 2 1 28 28 H 1.09001 * 109.46180 * 60.00085 * 4 3 2 29 29 H 1.08998 * 109.46744 * 300.00538 * 4 3 2 30 30 H 1.08997 * 109.46727 * 30.00130 * 6 5 4 31 31 H 1.09002 * 109.46704 * 149.99775 * 6 5 4 32 32 H 0.97001 * 119.99928 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.46915 * 59.99330 * 17 15 5 34 34 H 1.09003 * 109.46819 * 299.99801 * 17 15 5 35 35 H 1.09002 * 109.46481 * 305.85957 * 19 18 17 36 36 H 1.08994 * 109.46283 * 65.83811 * 19 18 17 37 37 H 1.08997 * 109.50952 * 60.75924 * 20 19 18 38 38 H 1.08998 * 109.50459 * 180.87821 * 20 19 18 39 39 H 1.08997 * 109.49981 * 182.39822 * 24 21 20 40 40 H 1.08998 * 109.53089 * 62.30397 * 24 21 20 41 41 H 1.08993 * 109.46313 * 294.17341 * 25 18 17 42 42 H 1.09000 * 109.46480 * 54.15451 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3555 0.4911 5 7 4.5836 -1.3550 0.4905 6 6 5.3158 -1.7868 -0.7028 7 6 5.5675 -3.2707 -0.6281 8 1 5.2167 -3.8358 0.2228 9 6 6.2455 -3.9071 -1.6461 10 7 6.4647 -5.2021 -1.5812 11 14 6.8528 -2.9296 -3.1175 12 1 8.2261 -2.4324 -2.8490 13 1 6.8685 -3.8021 -4.3191 14 1 5.9466 -1.7772 -3.3545 15 6 5.2578 -0.9573 1.5876 16 8 6.4706 -0.9574 1.5873 17 6 4.5047 -0.5136 2.8152 18 7 5.4595 -0.1335 3.8648 19 6 4.7755 0.5248 4.9852 20 6 5.8124 1.0352 5.9883 21 6 6.6466 -0.1437 6.4972 22 9 5.8168 -1.0494 7.1667 23 9 7.6323 0.3243 7.3727 24 6 7.3095 -0.8413 5.3060 25 6 6.2293 -1.2972 4.3224 26 1 2.9709 0.7869 0.6620 27 1 2.9712 0.1811 -1.0117 28 1 2.7557 -2.1416 -0.1710 29 1 2.7554 -1.5358 1.5028 30 1 4.7263 -1.5625 -1.5917 31 1 6.2680 -1.2589 -0.7555 32 1 6.9421 -5.6497 -2.2972 33 1 3.8787 -1.3312 3.1727 34 1 3.8773 0.3425 2.5669 35 1 4.1891 1.3637 4.6104 36 1 4.1149 -0.1890 5.4772 37 1 6.4650 1.7593 5.5007 38 1 5.3040 1.5099 6.8275 39 1 7.8705 -1.7071 5.6576 40 1 7.9860 -0.1471 4.8076 41 1 5.5617 -2.0024 4.8174 42 1 6.6990 -1.7815 3.4663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796541313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:50 Heat of formation + Delta-G solvation = -121.598810 kcal Electronic energy + Delta-G solvation = -26934.307403 eV Core-core repulsion = 22777.489463 eV Total energy + Delta-G solvation = -4156.817940 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.98081 -47.99749 -41.02212 -39.07558 -37.89481 -36.61812 -34.81803 -33.73267 -32.29323 -32.13063 -30.21169 -27.92590 -25.18268 -24.78389 -24.53763 -23.39978 -21.09384 -19.86687 -19.13671 -18.44790 -18.43906 -18.06925 -17.62385 -17.23472 -17.17129 -16.47183 -16.18700 -15.90149 -15.66605 -15.39819 -15.30323 -14.82612 -14.61065 -14.54221 -14.35873 -14.17581 -13.79140 -13.72365 -13.61484 -13.51252 -13.37514 -13.27914 -13.16476 -12.92779 -12.64236 -12.52337 -12.35055 -12.32258 -12.14474 -11.92917 -11.79173 -11.66208 -11.32367 -10.75042 -10.47780 -9.39419 -9.30281 -8.25907 -6.30100 1.40561 1.44575 1.51613 1.73298 1.89746 1.91616 2.22407 2.38433 2.74368 2.88767 3.09916 3.12941 3.21286 3.37413 3.48621 3.76839 3.99595 4.08342 4.14358 4.18469 4.25691 4.34499 4.42133 4.53114 4.59322 4.61933 4.69844 4.86308 4.86870 4.92843 4.93020 4.99019 5.06440 5.10067 5.15821 5.55935 5.68011 5.85327 6.05178 6.32396 6.66233 6.73368 6.77867 7.31354 7.54918 8.90992 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.011440 B = 0.004060 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.023012 B = 6895.058546 C = 8733.413082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.245 3.755 3 C -0.037 4.037 4 C 0.111 3.889 5 N -0.596 5.596 6 C 0.224 3.776 7 C -0.530 4.530 8 H 0.028 0.972 9 C 0.008 3.992 10 N -0.951 5.951 11 Si 0.943 3.057 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.226 1.226 15 C 0.503 3.497 16 O -0.566 6.566 17 C 0.042 3.958 18 N -0.532 5.532 19 C 0.055 3.945 20 C -0.146 4.146 21 C 0.279 3.721 22 F -0.212 7.212 23 F -0.211 7.211 24 C -0.148 4.148 25 C 0.055 3.945 26 H 0.143 0.857 27 H 0.127 0.873 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.265 0.735 33 H 0.077 0.923 34 H 0.147 0.853 35 H 0.123 0.877 36 H 0.046 0.954 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.036 0.964 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.403 16.511 11.886 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.072 4.072 3 C -0.078 4.078 4 C -0.013 4.013 5 N -0.328 5.328 6 C 0.102 3.898 7 C -0.569 4.569 8 H 0.047 0.953 9 C -0.189 4.189 10 N -0.592 5.592 11 Si 0.766 3.234 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.148 1.148 15 C 0.292 3.708 16 O -0.444 6.444 17 C -0.088 4.088 18 N -0.258 5.258 19 C -0.072 4.072 20 C -0.184 4.184 21 C 0.243 3.757 22 F -0.193 7.193 23 F -0.192 7.192 24 C -0.187 4.187 25 C -0.073 4.073 26 H 0.161 0.839 27 H 0.145 0.855 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.165 0.835 35 H 0.141 0.859 36 H 0.064 0.936 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.105 0.895 40 H 0.122 0.878 41 H 0.054 0.946 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.069 16.699 11.634 21.238 hybrid contribution 0.686 -1.459 -0.219 1.627 sum -5.383 15.240 11.415 19.787 Atomic orbital electron populations 1.81276 1.14696 1.10231 1.10994 1.29235 0.95054 0.91578 0.91333 1.19877 0.79761 1.00445 1.07675 1.21527 0.78933 0.96633 1.04239 1.47846 1.06677 1.64016 1.14238 1.19367 0.93169 0.92523 0.84786 1.21633 1.36046 0.93764 1.05450 0.95326 1.25845 0.95611 0.95679 1.01768 1.70064 1.43112 1.11011 1.34986 0.85784 0.79765 0.79734 0.78077 1.20488 1.21224 1.14843 1.21096 0.87957 0.76847 0.84904 1.90646 1.16114 1.54907 1.82738 1.22133 0.93774 1.03490 0.89393 1.61591 1.25832 1.27334 1.10996 1.22211 0.94834 1.00088 0.90026 1.22591 0.99193 0.95723 1.00906 1.21478 0.81574 0.88789 0.83822 1.92968 1.73154 1.70182 1.82976 1.92983 1.64203 1.89341 1.72644 1.22500 0.99402 1.02676 0.94090 1.22042 0.95351 0.91931 0.98022 0.83907 0.85481 0.90092 0.88006 0.92377 0.95646 0.92638 0.90537 0.83511 0.85891 0.93567 0.87103 0.87016 0.89512 0.87842 0.94585 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.33 18.54 20.00 0.37 -11.96 16 2 C 0.25 4.41 15.43 89.44 1.38 5.79 16 3 C -0.04 -0.47 6.03 28.79 0.17 -0.30 16 4 C 0.11 2.29 5.17 86.38 0.45 2.73 16 5 N -0.60 -18.53 2.46 -826.16 -2.03 -20.56 16 6 C 0.22 9.16 4.23 85.63 0.36 9.52 16 7 C -0.53 -28.43 9.94 25.60 0.25 -28.17 16 8 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 9 C 0.01 0.46 5.47 84.66 0.46 0.93 16 10 N -0.95 -58.25 13.96 21.45 0.30 -57.95 16 11 Si 0.94 41.48 27.47 68.60 1.88 43.36 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 14 H -0.23 -8.43 6.54 99.48 0.65 -7.78 16 15 C 0.50 15.90 7.35 87.66 0.64 16.55 16 16 O -0.57 -23.80 13.90 -3.03 -0.04 -23.85 16 17 C 0.04 0.84 4.00 85.56 0.34 1.18 16 18 N -0.53 -11.45 4.40 -900.96 -3.96 -15.41 16 19 C 0.06 0.78 5.35 86.32 0.46 1.24 16 20 C -0.15 -2.12 5.62 30.65 0.17 -1.95 16 21 C 0.28 5.85 2.12 30.68 0.07 5.91 16 22 F -0.21 -5.03 16.22 44.97 0.73 -4.30 16 23 F -0.21 -4.88 17.07 44.97 0.77 -4.11 16 24 C -0.15 -3.48 5.62 30.65 0.17 -3.31 16 25 C 0.05 1.45 4.99 86.33 0.43 1.88 16 26 H 0.14 0.93 7.22 -2.39 -0.02 0.92 16 27 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.08 1.96 8.07 -2.39 -0.02 1.94 16 29 H 0.10 1.61 6.44 -2.39 -0.02 1.59 16 30 H 0.06 2.09 7.13 -2.39 -0.02 2.08 16 31 H 0.03 1.13 6.85 -2.39 -0.02 1.12 16 32 H 0.26 15.24 8.31 -92.71 -0.77 14.46 16 33 H 0.08 1.38 7.38 -2.39 -0.02 1.36 16 34 H 0.15 1.56 7.03 -2.39 -0.02 1.54 16 35 H 0.12 0.98 8.02 -2.39 -0.02 0.97 16 36 H 0.05 0.67 7.87 -2.39 -0.02 0.65 16 37 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.04 0.94 7.87 -2.39 -0.02 0.92 16 42 H 0.08 2.69 5.78 -2.39 -0.01 2.67 16 Total: -1.00 -78.02 352.83 4.37 -73.65 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.98 Total: 9.12 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 5.37 Total: 12.02 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -5.32 Total: -105.88 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.04 Total: -23.85 kcal Atomic # 9 Polarization: -9.92 SS G_CDS: 1.50 Total: -8.42 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.88 Total: 43.36 kcal Total: -78.02 4.37 -73.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796541313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.951 kcal (2) G-P(sol) polarization free energy of solvation -78.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds