Wall clock time and date at job start Tue Mar 31 2020 12:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.64132 * 2 1 4 4 O 1.21277 * 120.00133 * 114.94700 * 3 2 1 5 5 N 1.34782 * 119.99787 * 294.94029 * 3 2 1 6 6 C 1.46499 * 119.99456 * 180.27484 * 5 3 2 7 7 C 1.50699 * 109.46819 * 179.73175 * 6 5 3 8 8 C 1.38302 * 119.92854 * 269.72880 * 7 6 5 9 9 C 1.38101 * 120.06828 * 179.72751 * 8 7 6 10 10 C 1.38876 * 119.93220 * 0.56366 * 9 8 7 11 11 O 1.35756 * 120.07114 * 179.68371 * 10 9 8 12 12 C 1.34835 * 116.99877 * 185.72910 * 11 10 9 13 13 H 1.07997 * 119.99878 * 5.42227 * 12 11 10 14 14 C 1.38648 * 119.99845 * 185.42079 * 12 11 10 15 15 N 1.31557 * 120.00139 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99799 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46969 * 90.00720 * 16 14 12 18 18 H 1.48506 * 109.47002 * 210.00134 * 16 14 12 19 19 H 1.48491 * 109.47529 * 330.00238 * 16 14 12 20 20 C 1.38879 * 119.85922 * 359.70721 * 10 9 8 21 21 C 1.38097 * 119.93371 * 0.02562 * 20 10 9 22 22 C 1.53022 * 109.64444 * 120.42395 * 2 1 3 23 23 C 1.50068 * 110.14760 * 169.32966 * 22 2 1 24 24 C 1.29441 * 124.07542 * 342.87165 * 23 22 2 25 25 C 1.50063 * 124.07567 * 0.48500 * 24 23 22 26 26 C 1.53396 * 109.63912 * 239.58213 * 2 1 3 27 27 H 1.08999 * 109.47228 * 59.99447 * 1 2 3 28 28 H 1.08990 * 109.46908 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46401 * 300.00040 * 1 2 3 30 30 H 0.96993 * 120.00042 * 0.02562 * 5 3 2 31 31 H 1.08996 * 109.47413 * 299.72505 * 6 5 3 32 32 H 1.08996 * 109.47000 * 59.73120 * 6 5 3 33 33 H 1.08002 * 119.96581 * 359.97438 * 8 7 6 34 34 H 1.08002 * 120.03597 * 180.26758 * 9 8 7 35 35 H 0.97000 * 119.99907 * 180.02562 * 15 14 12 36 36 H 1.08003 * 120.03297 * 180.02562 * 20 10 9 37 37 H 1.07995 * 119.96753 * 180.02562 * 21 20 10 38 38 H 1.09004 * 109.35632 * 289.53400 * 22 2 1 39 39 H 1.09000 * 109.35852 * 49.11865 * 22 2 1 40 40 H 1.08000 * 117.96035 * 162.88895 * 23 22 2 41 41 H 1.07999 * 117.95946 * 180.47199 * 24 23 22 42 42 H 1.09004 * 109.36000 * 103.06128 * 25 24 23 43 43 H 1.09007 * 109.35683 * 222.77862 * 25 24 23 44 44 H 1.08996 * 109.63875 * 292.35048 * 26 2 1 45 45 H 1.08998 * 109.64380 * 52.98400 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0366 1.4194 0.0000 4 8 2.6576 1.8416 0.9523 5 7 1.7995 2.2195 -1.0584 6 6 2.2972 3.5973 -1.0609 7 6 1.9063 4.2702 -2.3515 8 6 2.7529 4.2126 -3.4436 9 6 2.3950 4.8234 -4.6294 10 6 1.1890 5.5059 -4.7210 11 8 0.8374 6.1128 -5.8833 12 6 -0.2872 6.8565 -5.8697 13 1 -0.8153 7.0199 -4.9419 14 6 -0.7656 7.4114 -7.0468 15 7 -1.8626 8.1374 -7.0335 16 14 0.1483 7.1292 -8.6513 17 1 -0.3727 5.9039 -9.3089 18 1 -0.0535 8.2959 -9.5477 19 1 1.5975 6.9637 -8.3731 20 6 0.3436 5.5666 -3.6208 21 6 0.7046 4.9491 -2.4395 22 6 2.0444 -0.7298 1.2427 23 6 3.5221 -0.9656 1.1290 24 6 4.1844 -0.8956 0.0191 25 6 3.5690 -0.5587 -1.3074 26 6 2.0456 -0.7315 -1.2459 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.3026 1.8819 -1.8199 31 1 1.8640 4.1417 -0.2218 32 1 3.3832 3.5915 -0.9686 33 1 3.6930 3.6861 -3.3703 34 1 3.0546 4.7745 -5.4832 35 1 -2.1975 8.5253 -7.8571 36 1 -0.5951 6.0962 -3.6890 37 1 0.0475 4.9956 -1.5837 38 1 1.8420 -0.1249 2.1266 39 1 1.5320 -1.6871 1.3375 40 1 4.0668 -1.2090 2.0293 41 1 5.2460 -1.0916 0.0497 42 1 3.8039 0.4747 -1.5627 43 1 3.9745 -1.2209 -2.0725 44 1 1.8010 -1.7913 -1.1758 45 1 1.5867 -0.3045 -2.1376 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823045697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:38 Heat of formation + Delta-G solvation = -55.341124 kcal Electronic energy + Delta-G solvation = -25763.942384 eV Core-core repulsion = 22131.934371 eV Total energy + Delta-G solvation = -3632.008013 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.70852 -40.90693 -38.88069 -38.10619 -35.70942 -34.46566 -33.89766 -31.93564 -31.79727 -31.17389 -27.84356 -27.50350 -26.31295 -24.03987 -23.80541 -23.67197 -22.06618 -20.86190 -19.86218 -19.34924 -19.03313 -17.28240 -17.18898 -16.74883 -16.66896 -16.19149 -15.91155 -15.76169 -15.61533 -15.25710 -14.90648 -14.74734 -14.56851 -14.36725 -14.25319 -14.06988 -13.70737 -13.53120 -13.27873 -13.10232 -13.09736 -12.91524 -12.82453 -12.58231 -12.46000 -12.39799 -12.32901 -11.93538 -11.33046 -11.31927 -11.07634 -10.94203 -10.64285 -10.05845 -9.84384 -9.78010 -9.09446 -8.51197 -6.24196 0.48818 0.53798 1.32725 1.35863 1.47599 1.52582 1.74869 2.27481 2.31254 2.79337 3.07591 3.11971 3.58795 3.70236 3.76776 3.85325 4.00257 4.13444 4.15933 4.25172 4.39360 4.42876 4.46369 4.53704 4.59017 4.72598 4.74987 4.80345 4.83823 4.89484 4.93546 4.94759 5.02999 5.14345 5.21324 5.25392 5.27495 5.32186 5.33633 5.48176 5.53650 5.70315 5.77670 5.78221 5.87484 6.11308 6.18435 6.63791 6.83034 7.32619 7.55929 8.60204 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.025735 B = 0.002567 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.730809 B =10903.052858 C =11076.938866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.078 4.078 3 C 0.524 3.476 4 O -0.579 6.579 5 N -0.715 5.715 6 C 0.183 3.817 7 C -0.172 4.172 8 C -0.045 4.045 9 C -0.190 4.190 10 C 0.129 3.871 11 O -0.241 6.241 12 C -0.399 4.399 13 H 0.081 0.919 14 C 0.011 3.989 15 N -0.922 5.922 16 Si 0.970 3.030 17 H -0.265 1.265 18 H -0.269 1.269 19 H -0.261 1.261 20 C -0.237 4.237 21 C -0.051 4.051 22 C -0.069 4.069 23 C -0.151 4.151 24 C -0.173 4.173 25 C -0.097 4.097 26 C -0.105 4.105 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.409 0.591 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.152 0.848 34 H 0.131 0.869 35 H 0.285 0.715 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.310 -20.777 12.053 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 C 0.312 3.688 4 O -0.459 6.459 5 N -0.367 5.367 6 C 0.060 3.940 7 C -0.173 4.173 8 C -0.064 4.064 9 C -0.209 4.209 10 C 0.080 3.920 11 O -0.148 6.148 12 C -0.475 4.475 13 H 0.099 0.901 14 C -0.188 4.188 15 N -0.562 5.562 16 Si 0.793 3.207 17 H -0.190 1.190 18 H -0.194 1.194 19 H -0.185 1.185 20 C -0.256 4.256 21 C -0.069 4.069 22 C -0.106 4.106 23 C -0.169 4.169 24 C -0.191 4.191 25 C -0.134 4.134 26 C -0.142 4.142 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.245 0.755 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.170 0.830 34 H 0.149 0.851 35 H 0.095 0.905 36 H 0.127 0.873 37 H 0.150 0.850 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.078 0.922 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.710 -20.323 12.405 25.353 hybrid contribution -0.353 0.657 -0.785 1.083 sum 8.358 -19.666 11.620 24.323 Atomic orbital electron populations 1.21867 0.90862 1.04338 1.02669 1.20948 0.97920 0.90518 0.98702 1.20927 0.78316 0.88111 0.81472 1.90661 1.42326 1.76770 1.36108 1.46150 1.57359 1.12457 1.20724 1.19851 0.99019 0.81386 0.93719 1.19530 0.96426 1.05279 0.96088 1.20922 0.99117 0.96033 0.90287 1.20502 0.95407 1.04527 1.00507 1.19736 0.94408 0.92017 0.85872 1.83535 1.41855 1.58370 1.31079 1.20687 1.01458 1.27871 0.97501 0.90103 1.25290 0.96266 0.95167 1.02080 1.69730 1.21997 1.33951 1.30565 0.85217 0.79566 0.78455 0.77507 1.18988 1.19422 1.18518 1.21262 1.01721 1.07789 0.94821 1.20900 0.95865 0.94214 0.95951 1.20371 0.93344 1.00479 0.96394 1.22063 0.96555 1.00398 0.97875 1.22098 0.99808 1.02087 0.95065 1.20595 0.95601 1.01491 0.95751 1.21821 0.94837 1.01834 0.95758 0.91366 0.89160 0.92721 0.75477 0.91788 0.91053 0.83028 0.85082 0.90535 0.87307 0.84983 0.91641 0.88045 0.87928 0.87927 0.92196 0.89336 0.88862 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.44 71.98 0.61 -1.14 16 2 C -0.08 -1.24 0.65 -52.79 -0.03 -1.27 16 3 C 0.52 11.83 4.72 87.66 0.41 12.25 16 4 O -0.58 -17.74 15.30 -3.02 -0.05 -17.78 16 5 N -0.72 -14.69 5.33 -466.79 -2.49 -17.18 16 6 C 0.18 4.31 5.80 85.63 0.50 4.81 16 7 C -0.17 -4.66 5.25 -19.83 -0.10 -4.76 16 8 C -0.05 -1.24 9.69 22.25 0.22 -1.02 16 9 C -0.19 -6.63 9.99 22.39 0.22 -6.40 16 10 C 0.13 5.67 6.65 22.58 0.15 5.82 16 11 O -0.24 -12.55 8.59 -22.85 -0.20 -12.75 16 12 C -0.40 -22.79 9.90 67.92 0.67 -22.12 16 13 H 0.08 4.85 5.53 -2.91 -0.02 4.84 16 14 C 0.01 0.60 5.49 84.83 0.47 1.07 16 15 N -0.92 -54.05 13.96 21.61 0.30 -53.75 16 16 Si 0.97 44.11 28.62 68.60 1.96 46.08 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 20 C -0.24 -9.73 9.13 22.39 0.20 -9.53 16 21 C -0.05 -1.61 9.69 22.25 0.22 -1.40 16 22 C -0.07 -1.14 4.55 29.66 0.13 -1.00 16 23 C -0.15 -2.77 9.06 27.04 0.24 -2.53 16 24 C -0.17 -3.08 9.62 27.04 0.26 -2.82 16 25 C -0.10 -1.51 5.60 29.80 0.17 -1.34 16 26 C -0.10 -1.33 4.76 30.88 0.15 -1.18 16 27 H 0.07 0.81 7.94 -2.39 -0.02 0.79 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.41 7.15 7.59 -92.71 -0.70 6.45 16 31 H 0.06 1.60 8.08 -2.39 -0.02 1.58 16 32 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 33 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 35 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.11 5.01 5.71 -2.91 -0.02 4.99 16 37 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 38 H 0.07 1.30 7.68 -2.39 -0.02 1.28 16 39 H 0.10 1.18 8.11 -2.39 -0.02 1.16 16 40 H 0.10 1.78 8.06 -2.91 -0.02 1.75 16 41 H 0.10 1.70 8.06 -2.91 -0.02 1.68 16 42 H 0.06 1.10 7.36 -2.38 -0.02 1.09 16 43 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.09 0.91 8.13 -2.39 -0.02 0.89 16 45 H 0.08 0.90 7.59 -2.39 -0.02 0.88 16 Total: -1.00 -67.93 366.94 4.30 -63.63 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.29 Total: 24.32 kcal Atomic # 6 Polarization: -37.06 SS G_CDS: 4.48 Total: -32.58 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: -2.19 Total: -70.93 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.24 Total: -30.53 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.96 Total: 46.08 kcal Total: -67.93 4.30 -63.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823045697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.290 kcal (2) G-P(sol) polarization free energy of solvation -67.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds