Wall clock time and date at job start Tue Mar 31 2020 12:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.63029 * 2 1 4 4 C 1.53012 * 109.63352 * 120.38878 * 2 1 3 5 5 C 1.50090 * 110.13512 * 169.45361 * 4 2 1 6 6 C 1.31574 * 123.79088 * 342.83916 * 5 4 2 7 7 C 1.47069 * 118.10549 * 180.41727 * 6 5 4 8 8 O 1.21620 * 120.00131 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99900 * 179.97438 * 7 6 5 10 10 C 1.39826 * 120.00069 * 174.79161 * 9 7 6 11 11 C 1.38988 * 120.03610 * 326.13315 * 10 9 7 12 12 C 1.38156 * 120.05906 * 179.72302 * 11 10 9 13 13 C 1.38168 * 120.14602 * 0.55085 * 12 11 10 14 14 C 1.38912 * 120.07345 * 359.72812 * 13 12 11 15 15 O 1.35750 * 120.03362 * 179.97438 * 14 13 12 16 16 C 1.34831 * 117.00111 * 185.92398 * 15 14 13 17 17 H 1.07997 * 120.00187 * 5.40130 * 16 15 14 18 18 C 1.38657 * 119.99850 * 185.40402 * 16 15 14 19 19 N 1.31560 * 119.99614 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00256 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47300 * 90.00046 * 20 18 16 22 22 H 1.48504 * 109.47243 * 210.00510 * 20 18 16 23 23 H 1.48504 * 109.47110 * 330.00226 * 20 18 16 24 24 C 1.38732 * 120.04087 * 146.40782 * 10 9 7 25 25 C 1.50100 * 123.78952 * 0.43711 * 6 5 4 26 26 C 1.53018 * 110.12243 * 342.79671 * 25 6 5 27 27 H 1.09002 * 109.46827 * 299.61036 * 1 2 3 28 28 H 1.08994 * 109.47061 * 179.61249 * 1 2 3 29 29 H 1.09000 * 109.46959 * 59.60341 * 1 2 3 30 30 H 1.08992 * 109.47274 * 60.00137 * 3 2 1 31 31 H 1.08999 * 109.47178 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46636 * 300.00077 * 3 2 1 33 33 H 1.08996 * 109.36094 * 289.66592 * 4 2 1 34 34 H 1.08998 * 109.35712 * 49.38955 * 4 2 1 35 35 H 1.08005 * 118.10673 * 162.85070 * 5 4 2 36 36 H 0.97008 * 119.99670 * 354.78890 * 9 7 6 37 37 H 1.07995 * 119.96939 * 0.02562 * 11 10 9 38 38 H 1.08005 * 119.92630 * 180.25759 * 12 11 10 39 39 H 1.07997 * 119.96540 * 179.70059 * 13 12 11 40 40 H 0.97000 * 119.99400 * 180.02562 * 19 18 16 41 41 H 1.08009 * 120.06966 * 359.97438 * 24 10 9 42 42 H 1.08998 * 109.35938 * 103.01418 * 25 6 5 43 43 H 1.08995 * 109.35949 * 222.74320 * 25 6 5 44 44 H 1.09000 * 109.65276 * 290.06976 * 26 25 6 45 45 H 1.08999 * 109.62569 * 169.48107 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 2.0441 -0.7290 1.2432 5 6 3.5226 -0.9622 1.1309 6 6 4.1912 -0.8889 0.0001 7 6 5.6381 -1.1503 0.0325 8 8 6.1831 -1.4246 1.0846 9 7 6.3601 -1.0860 -1.1038 10 6 7.7505 -1.2267 -1.0575 11 6 8.4623 -0.7469 0.0356 12 6 9.8355 -0.8907 0.0845 13 6 10.5067 -1.5013 -0.9575 14 6 9.8017 -1.9778 -2.0555 15 8 10.4620 -2.5770 -3.0790 16 6 9.7362 -2.9058 -4.1667 17 1 8.6988 -2.6130 -4.2323 18 6 10.3218 -3.6200 -5.2010 19 7 9.6136 -3.9404 -6.2624 20 14 12.1163 -4.1259 -5.0878 21 1 12.2148 -5.4599 -4.4428 22 1 12.6991 -4.1914 -6.4521 23 1 12.8617 -3.1286 -4.2785 24 6 8.4217 -1.8401 -2.1052 25 6 3.5627 -0.5533 -1.3210 26 6 2.0453 -0.7351 -1.2434 27 1 -0.3633 0.5078 0.8935 28 1 -0.3633 -1.0276 -0.0070 29 1 -0.3633 0.5200 -0.8864 30 1 1.6822 1.9560 0.8899 31 1 3.1340 1.4381 -0.0005 32 1 1.6821 1.9559 -0.8900 33 1 1.8396 -0.1247 2.1269 34 1 1.5351 -1.6884 1.3358 35 1 4.0692 -1.2044 2.0304 36 1 5.9151 -0.9422 -1.9537 37 1 7.9409 -0.2657 0.8498 38 1 10.3860 -0.5208 0.9369 39 1 11.5807 -1.6078 -0.9185 40 1 10.0232 -4.4403 -6.9858 41 1 7.8714 -2.2102 -2.9577 42 1 3.7903 0.4814 -1.5770 43 1 3.9646 -1.2127 -2.0902 44 1 1.8066 -1.7959 -1.1668 45 1 1.5803 -0.3159 -2.1356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836398652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:25 Heat of formation + Delta-G solvation = -36.670702 kcal Electronic energy + Delta-G solvation = -25685.988103 eV Core-core repulsion = 22054.789700 eV Total energy + Delta-G solvation = -3631.198403 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.69082 -39.44281 -38.57529 -36.57526 -34.38051 -33.53154 -32.35233 -31.13601 -29.50415 -28.87951 -27.63460 -27.20701 -25.21947 -23.54460 -23.03139 -21.77297 -20.82149 -19.77785 -18.42116 -17.76551 -17.38878 -16.93389 -15.69695 -15.44588 -15.25519 -15.08757 -14.83465 -14.43925 -14.24800 -14.10090 -13.82447 -13.68570 -13.53802 -13.13099 -13.09026 -12.58318 -12.40022 -12.31645 -12.18901 -12.16003 -12.01929 -11.79433 -11.66040 -11.21465 -10.93308 -10.86946 -10.78444 -10.77403 -10.45746 -10.27624 -9.89452 -9.59520 -9.45708 -9.21169 -8.85558 -7.79490 -7.29020 -6.43114 -4.10125 1.25707 2.05435 2.29747 3.21358 3.25318 3.29735 3.34291 3.40764 4.23390 4.25156 4.33361 4.45005 4.51819 4.73661 4.85181 4.87164 4.94157 5.05112 5.07958 5.15468 5.29876 5.32091 5.40552 5.48430 5.55042 5.60383 5.62203 5.64632 5.68170 5.83069 5.87422 5.91840 5.94080 5.98321 6.10852 6.16776 6.19924 6.30727 6.42492 6.50762 6.89517 6.95662 7.19140 7.20455 7.56288 7.72347 7.76837 8.01668 8.31669 8.92584 9.55086 10.64647 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.002848 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.961794 B = 9830.534249 C =10901.814387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C -0.146 4.146 4 C -0.086 4.086 5 C -0.069 4.069 6 C -0.173 4.173 7 C 0.547 3.453 8 O -0.527 6.527 9 N -0.665 5.665 10 C 0.181 3.819 11 C -0.198 4.198 12 C -0.064 4.064 13 C -0.201 4.201 14 C 0.174 3.826 15 O -0.216 6.216 16 C -0.389 4.389 17 H 0.104 0.896 18 C 0.063 3.937 19 N -0.881 5.881 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.244 4.244 25 C -0.088 4.088 26 C -0.107 4.107 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.408 0.592 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.279 0.721 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.814 8.956 11.298 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 C -0.203 4.203 4 C -0.122 4.122 5 C -0.088 4.088 6 C -0.176 4.176 7 C 0.336 3.664 8 O -0.404 6.404 9 N -0.309 5.309 10 C 0.087 3.913 11 C -0.219 4.219 12 C -0.083 4.083 13 C -0.221 4.221 14 C 0.121 3.879 15 O -0.121 6.121 16 C -0.465 4.465 17 H 0.122 0.878 18 C -0.140 4.140 19 N -0.519 5.519 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.266 4.266 25 C -0.125 4.125 26 C -0.144 4.144 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.244 0.756 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.089 0.911 41 H 0.154 0.846 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.229 8.605 11.783 21.823 hybrid contribution 0.398 -0.341 -0.641 0.828 sum -15.831 8.264 11.142 21.049 Atomic orbital electron populations 1.21853 0.94197 1.01855 1.01893 1.20638 0.95414 0.95732 0.95038 1.21953 1.01833 0.94829 1.01656 1.20692 0.92112 1.01064 0.98378 1.22859 0.95907 0.92284 0.97770 1.20700 0.92577 1.07453 0.96841 1.18633 0.87369 0.76769 0.83601 1.90790 1.72345 1.46964 1.30312 1.43450 1.05939 1.71148 1.10367 1.17427 0.81294 0.96732 0.95830 1.20606 0.93857 1.07742 0.99649 1.20527 0.93490 0.97355 0.96943 1.20242 0.99621 1.07518 0.94679 1.18806 0.89819 0.91384 0.87844 1.83615 1.37179 1.68004 1.23282 1.20720 0.97122 1.36027 0.92621 0.87830 1.24460 0.99956 0.95344 0.94209 1.69646 1.37040 1.37899 1.07278 0.86180 0.83390 0.79810 0.77539 1.19908 1.20792 1.18274 1.20942 0.94771 1.08929 1.01917 1.20468 0.95708 1.02303 0.94014 1.21655 0.94488 1.00733 0.97558 0.92586 0.92554 0.92442 0.92754 0.91893 0.92545 0.90109 0.89742 0.85815 0.75577 0.86218 0.86439 0.86366 0.91073 0.84643 0.89982 0.90595 0.91387 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.48 37.16 0.32 -0.49 16 2 C -0.07 -0.47 0.78 -154.31 -0.12 -0.59 16 3 C -0.15 -1.04 7.81 37.16 0.29 -0.75 16 4 C -0.09 -0.64 4.87 -28.17 -0.14 -0.78 16 5 C -0.07 -0.71 9.01 -36.46 -0.33 -1.04 16 6 C -0.17 -2.00 5.12 -103.19 -0.53 -2.52 16 7 C 0.55 8.53 7.45 -12.68 -0.09 8.44 16 8 O -0.53 -9.94 13.67 5.26 0.07 -9.87 16 9 N -0.66 -10.55 5.27 -10.96 -0.06 -10.60 16 10 C 0.18 3.50 6.26 -83.75 -0.52 2.97 16 11 C -0.20 -3.77 8.65 -39.33 -0.34 -4.11 16 12 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 13 C -0.20 -4.09 9.99 -39.36 -0.39 -4.48 16 14 C 0.17 4.07 6.64 -39.13 -0.26 3.81 16 15 O -0.22 -5.69 8.58 0.05 0.00 -5.69 16 16 C -0.39 -10.88 9.90 30.89 0.31 -10.58 16 17 H 0.10 2.93 5.53 -52.49 -0.29 2.64 16 18 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 19 N -0.88 -25.21 13.96 55.48 0.77 -24.43 16 20 Si 0.91 21.65 28.62 -169.99 -4.86 16.79 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 24 C -0.24 -5.32 9.04 -39.20 -0.35 -5.67 16 25 C -0.09 -0.80 4.44 -28.16 -0.12 -0.92 16 26 C -0.11 -0.81 4.94 -26.53 -0.13 -0.94 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.53 5.69 -51.93 -0.30 0.23 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 34 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 35 H 0.12 1.44 7.17 -52.48 -0.38 1.06 16 36 H 0.41 5.36 6.99 -40.82 -0.29 5.07 16 37 H 0.12 2.24 6.44 -52.49 -0.34 1.90 16 38 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 39 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.28 7.39 8.31 -40.82 -0.34 7.06 16 41 H 0.14 3.03 5.72 -52.48 -0.30 2.73 16 42 H 0.08 0.69 6.92 -51.93 -0.36 0.33 16 43 H 0.08 0.68 7.12 -51.93 -0.37 0.31 16 44 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -31.51 359.53 -7.97 -39.49 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.40 Total: 6.47 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -2.92 Total: -17.56 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.72 Total: -35.04 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.07 Total: -15.56 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.86 Total: 16.79 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.51 -7.97 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836398652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.815 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds