Wall clock time and date at job start Tue Mar 31 2020 12:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.63029 * 2 1 4 4 C 1.53012 * 109.63352 * 120.38878 * 2 1 3 5 5 C 1.50090 * 110.13512 * 169.45361 * 4 2 1 6 6 C 1.31574 * 123.79088 * 342.83916 * 5 4 2 7 7 C 1.47069 * 118.10549 * 180.41727 * 6 5 4 8 8 O 1.21620 * 120.00131 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99900 * 179.97438 * 7 6 5 10 10 C 1.39826 * 120.00069 * 174.79161 * 9 7 6 11 11 C 1.38988 * 120.03610 * 326.13315 * 10 9 7 12 12 C 1.38156 * 120.05906 * 179.72302 * 11 10 9 13 13 C 1.38168 * 120.14602 * 0.55085 * 12 11 10 14 14 C 1.38912 * 120.07345 * 359.72812 * 13 12 11 15 15 O 1.35750 * 120.03362 * 179.97438 * 14 13 12 16 16 C 1.34831 * 117.00111 * 185.92398 * 15 14 13 17 17 H 1.07997 * 120.00187 * 5.40130 * 16 15 14 18 18 C 1.38657 * 119.99850 * 185.40402 * 16 15 14 19 19 N 1.31560 * 119.99614 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00256 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47300 * 90.00046 * 20 18 16 22 22 H 1.48504 * 109.47243 * 210.00510 * 20 18 16 23 23 H 1.48504 * 109.47110 * 330.00226 * 20 18 16 24 24 C 1.38732 * 120.04087 * 146.40782 * 10 9 7 25 25 C 1.50100 * 123.78952 * 0.43711 * 6 5 4 26 26 C 1.53018 * 110.12243 * 342.79671 * 25 6 5 27 27 H 1.09002 * 109.46827 * 299.61036 * 1 2 3 28 28 H 1.08994 * 109.47061 * 179.61249 * 1 2 3 29 29 H 1.09000 * 109.46959 * 59.60341 * 1 2 3 30 30 H 1.08992 * 109.47274 * 60.00137 * 3 2 1 31 31 H 1.08999 * 109.47178 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46636 * 300.00077 * 3 2 1 33 33 H 1.08996 * 109.36094 * 289.66592 * 4 2 1 34 34 H 1.08998 * 109.35712 * 49.38955 * 4 2 1 35 35 H 1.08005 * 118.10673 * 162.85070 * 5 4 2 36 36 H 0.97008 * 119.99670 * 354.78890 * 9 7 6 37 37 H 1.07995 * 119.96939 * 0.02562 * 11 10 9 38 38 H 1.08005 * 119.92630 * 180.25759 * 12 11 10 39 39 H 1.07997 * 119.96540 * 179.70059 * 13 12 11 40 40 H 0.97000 * 119.99400 * 180.02562 * 19 18 16 41 41 H 1.08009 * 120.06966 * 359.97438 * 24 10 9 42 42 H 1.08998 * 109.35938 * 103.01418 * 25 6 5 43 43 H 1.08995 * 109.35949 * 222.74320 * 25 6 5 44 44 H 1.09000 * 109.65276 * 290.06976 * 26 25 6 45 45 H 1.08999 * 109.62569 * 169.48107 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 2.0441 -0.7290 1.2432 5 6 3.5226 -0.9622 1.1309 6 6 4.1912 -0.8889 0.0001 7 6 5.6381 -1.1503 0.0325 8 8 6.1831 -1.4246 1.0846 9 7 6.3601 -1.0860 -1.1038 10 6 7.7505 -1.2267 -1.0575 11 6 8.4623 -0.7469 0.0356 12 6 9.8355 -0.8907 0.0845 13 6 10.5067 -1.5013 -0.9575 14 6 9.8017 -1.9778 -2.0555 15 8 10.4620 -2.5770 -3.0790 16 6 9.7362 -2.9058 -4.1667 17 1 8.6988 -2.6130 -4.2323 18 6 10.3218 -3.6200 -5.2010 19 7 9.6136 -3.9404 -6.2624 20 14 12.1163 -4.1259 -5.0878 21 1 12.2148 -5.4599 -4.4428 22 1 12.6991 -4.1914 -6.4521 23 1 12.8617 -3.1286 -4.2785 24 6 8.4217 -1.8401 -2.1052 25 6 3.5627 -0.5533 -1.3210 26 6 2.0453 -0.7351 -1.2434 27 1 -0.3633 0.5078 0.8935 28 1 -0.3633 -1.0276 -0.0070 29 1 -0.3633 0.5200 -0.8864 30 1 1.6822 1.9560 0.8899 31 1 3.1340 1.4381 -0.0005 32 1 1.6821 1.9559 -0.8900 33 1 1.8396 -0.1247 2.1269 34 1 1.5351 -1.6884 1.3358 35 1 4.0692 -1.2044 2.0304 36 1 5.9151 -0.9422 -1.9537 37 1 7.9409 -0.2657 0.8498 38 1 10.3860 -0.5208 0.9369 39 1 11.5807 -1.6078 -0.9185 40 1 10.0232 -4.4403 -6.9858 41 1 7.8714 -2.2102 -2.9577 42 1 3.7903 0.4814 -1.5770 43 1 3.9646 -1.2127 -2.0902 44 1 1.8066 -1.7959 -1.1668 45 1 1.5803 -0.3159 -2.1356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836398652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:24 Heat of formation + Delta-G solvation = -54.172830 kcal Electronic energy + Delta-G solvation = -25686.747052 eV Core-core repulsion = 22054.789700 eV Total energy + Delta-G solvation = -3631.957352 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.89613 -40.78405 -39.83658 -38.21399 -35.80794 -34.49138 -34.27851 -31.89713 -31.07603 -30.44098 -28.22859 -27.96443 -27.17930 -24.46919 -24.09173 -23.43677 -22.13840 -20.79668 -19.99030 -19.43623 -18.84583 -17.72007 -17.22322 -17.00046 -16.53193 -16.30846 -15.87368 -15.76213 -15.67254 -15.41284 -15.06616 -14.79290 -14.78147 -14.40387 -14.23010 -14.03386 -13.79062 -13.32807 -13.32427 -12.97179 -12.88811 -12.72471 -12.67878 -12.55626 -12.52125 -12.37467 -12.08033 -11.59455 -11.48065 -11.38897 -11.32863 -11.08396 -10.90929 -10.78469 -10.07869 -9.43610 -8.96254 -8.50879 -6.23654 0.11345 0.56629 0.67374 1.32394 1.36277 1.52731 2.02025 2.13153 2.28331 2.76229 3.05906 3.09365 3.46638 3.61499 3.88643 3.97114 4.06756 4.16144 4.20792 4.27099 4.38104 4.45614 4.50860 4.56709 4.66045 4.70053 4.73372 4.87021 4.89581 4.92374 4.94594 5.04373 5.06513 5.10710 5.25025 5.28114 5.31746 5.34764 5.39582 5.44411 5.55642 5.57873 5.59243 5.65989 5.72743 5.87722 6.17812 6.39467 6.83484 7.02241 7.55937 8.60416 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.002848 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.961794 B = 9830.534249 C =10901.814387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 C -0.145 4.145 4 C -0.084 4.084 5 C -0.051 4.051 6 C -0.186 4.186 7 C 0.544 3.456 8 O -0.563 6.563 9 N -0.661 5.661 10 C 0.181 3.819 11 C -0.193 4.193 12 C -0.051 4.051 13 C -0.201 4.201 14 C 0.141 3.859 15 O -0.238 6.238 16 C -0.399 4.399 17 H 0.082 0.918 18 C 0.013 3.987 19 N -0.920 5.920 20 Si 0.968 3.032 21 H -0.268 1.268 22 H -0.267 1.267 23 H -0.261 1.261 24 C -0.256 4.256 25 C -0.086 4.086 26 C -0.105 4.105 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.419 0.581 37 H 0.129 0.871 38 H 0.161 0.839 39 H 0.136 0.864 40 H 0.285 0.715 41 H 0.119 0.881 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.681 9.937 13.096 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 C -0.203 4.203 4 C -0.121 4.121 5 C -0.071 4.071 6 C -0.189 4.189 7 C 0.336 3.664 8 O -0.443 6.443 9 N -0.306 5.306 10 C 0.086 3.914 11 C -0.214 4.214 12 C -0.070 4.070 13 C -0.221 4.221 14 C 0.091 3.909 15 O -0.146 6.146 16 C -0.476 4.476 17 H 0.100 0.900 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.790 3.210 21 H -0.194 1.194 22 H -0.191 1.191 23 H -0.185 1.185 24 C -0.277 4.277 25 C -0.123 4.123 26 C -0.143 4.143 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.258 0.742 37 H 0.146 0.854 38 H 0.179 0.821 39 H 0.154 0.846 40 H 0.095 0.905 41 H 0.137 0.863 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.137 9.612 13.589 23.890 hybrid contribution 0.501 -0.514 -0.934 1.178 sum -16.636 9.098 12.656 22.797 Atomic orbital electron populations 1.21820 0.92857 1.02307 1.02484 1.20630 0.96376 0.95305 0.94223 1.21952 1.00836 0.95151 1.02326 1.20799 0.89706 1.02139 0.99443 1.23086 0.97556 0.89794 0.96620 1.20624 0.90129 1.09533 0.98573 1.19331 0.88892 0.75504 0.82635 1.90756 1.73410 1.48780 1.31393 1.43489 1.04746 1.70916 1.11458 1.17527 0.82979 0.95764 0.95129 1.20914 0.94527 1.06677 0.99284 1.20986 0.93237 0.95468 0.97266 1.20553 1.00649 1.06899 0.93966 1.19347 0.90784 0.92316 0.88411 1.83559 1.37345 1.69988 1.23659 1.20685 0.96589 1.36414 0.93874 0.90024 1.25250 1.04134 0.95429 0.93807 1.69722 1.38857 1.39347 1.08160 0.85252 0.78301 0.79287 0.78133 1.19360 1.19131 1.18472 1.20905 0.94658 1.09858 1.02311 1.20487 0.96845 1.02509 0.92430 1.21673 0.93111 1.00924 0.98570 0.91849 0.92183 0.92071 0.92089 0.93398 0.91962 0.88505 0.88388 0.87217 0.74230 0.85356 0.82147 0.84574 0.90549 0.86320 0.89395 0.91011 0.91508 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.48 71.98 0.61 -0.56 16 2 C -0.07 -0.74 0.78 -52.05 -0.04 -0.78 16 3 C -0.15 -1.77 7.81 71.98 0.56 -1.20 16 4 C -0.08 -1.05 4.87 29.66 0.14 -0.90 16 5 C -0.05 -0.99 9.01 24.91 0.22 -0.77 16 6 C -0.19 -4.16 5.12 -18.32 -0.09 -4.25 16 7 C 0.54 16.90 7.45 86.56 0.64 17.55 16 8 O -0.56 -21.14 13.67 -4.09 -0.06 -21.20 16 9 N -0.66 -21.16 5.27 -306.83 -1.62 -22.77 16 10 C 0.18 7.02 6.26 38.16 0.24 7.26 16 11 C -0.19 -7.10 8.65 22.43 0.19 -6.90 16 12 C -0.05 -1.74 10.03 22.23 0.22 -1.52 16 13 C -0.20 -7.94 9.99 22.41 0.22 -7.71 16 14 C 0.14 6.73 6.64 22.56 0.15 6.88 16 15 O -0.24 -12.92 8.58 -22.75 -0.20 -13.12 16 16 C -0.40 -23.31 9.90 67.92 0.67 -22.64 16 17 H 0.08 4.95 5.53 -2.91 -0.02 4.94 16 18 C 0.01 0.72 5.49 84.83 0.47 1.19 16 19 N -0.92 -54.31 13.96 21.61 0.30 -54.01 16 20 Si 0.97 45.17 28.62 68.60 1.96 47.14 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 23 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 24 C -0.26 -11.53 9.04 22.52 0.20 -11.32 16 25 C -0.09 -1.47 4.44 29.67 0.13 -1.34 16 26 C -0.11 -1.39 4.94 30.72 0.15 -1.24 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.73 5.69 -2.39 -0.01 0.72 16 32 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.10 0.96 8.11 -2.39 -0.02 0.94 16 34 H 0.10 1.04 8.11 -2.39 -0.02 1.02 16 35 H 0.11 2.47 7.17 -2.91 -0.02 2.45 16 36 H 0.42 11.27 6.99 -92.70 -0.65 10.63 16 37 H 0.13 4.57 6.44 -2.91 -0.02 4.55 16 38 H 0.16 4.09 8.06 -2.91 -0.02 4.07 16 39 H 0.14 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.12 5.69 5.72 -2.91 -0.02 5.67 16 42 H 0.09 1.39 6.92 -2.39 -0.02 1.37 16 43 H 0.07 1.27 7.12 -2.39 -0.02 1.26 16 44 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 45 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -69.88 359.53 5.47 -64.41 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.36 Total: 27.81 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 4.71 Total: -28.26 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -1.31 Total: -76.78 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.25 Total: -34.32 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.96 Total: 47.14 kcal Total: -69.88 5.47 -64.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836398652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.241 kcal (2) G-P(sol) polarization free energy of solvation -69.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds