Wall clock time and date at job start Tue Mar 31 2020 10:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86805 * 119.99577 * 2 1 4 4 H 1.48497 * 109.46903 * 270.00036 * 3 2 1 5 5 H 1.48494 * 109.46957 * 30.00349 * 3 2 1 6 6 H 1.48503 * 109.46620 * 150.00282 * 3 2 1 7 7 C 1.38654 * 120.00401 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00036 * 180.02562 * 7 2 1 9 9 O 1.34824 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.35756 * 117.00262 * 185.06321 * 9 7 2 11 11 C 1.38902 * 120.06455 * 354.48525 * 10 9 7 12 12 C 1.38074 * 119.92947 * 179.97438 * 11 10 9 13 13 C 1.38321 * 120.07149 * 359.74356 * 12 11 10 14 14 C 1.38282 * 120.13733 * 0.51432 * 13 12 11 15 15 C 1.50701 * 119.96841 * 179.76787 * 14 13 12 16 16 C 1.50697 * 109.46806 * 269.72118 * 15 14 13 17 17 O 1.21280 * 120.00261 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99870 * 179.97438 * 16 15 14 19 19 C 1.46503 * 120.00002 * 179.97438 * 18 16 15 20 20 H 1.09000 * 109.26365 * 324.50384 * 19 18 16 21 21 C 1.52875 * 109.26717 * 83.97062 * 19 18 16 22 22 C 1.58262 * 107.10018 * 64.10414 * 21 19 18 23 23 C 1.52876 * 106.19788 * 76.81690 * 22 21 19 24 24 C 1.52716 * 110.15335 * 303.09182 * 23 22 21 25 25 H 1.08996 * 115.38976 * 232.83348 * 24 23 22 26 26 C 1.53652 * 116.02930 * 90.19941 * 24 23 22 27 27 C 1.49171 * 60.26524 * 248.70839 * 26 24 23 28 28 H 1.08999 * 116.23918 * 253.37387 * 27 26 24 29 29 C 1.38129 * 120.06451 * 359.48528 * 14 13 12 30 30 H 0.96992 * 120.00552 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.03704 * 359.95939 * 11 10 9 32 32 H 1.08006 * 119.96733 * 180.02562 * 12 11 10 33 33 H 1.08001 * 119.93562 * 180.27753 * 13 12 11 34 34 H 1.09002 * 109.47193 * 149.72439 * 15 14 13 35 35 H 1.08998 * 109.47076 * 29.71882 * 15 14 13 36 36 H 0.96995 * 120.00407 * 0.02562 * 18 16 15 37 37 H 1.09000 * 109.61487 * 185.10775 * 21 19 18 38 38 H 1.08994 * 109.61691 * 305.64709 * 21 19 18 39 39 H 1.09000 * 112.78431 * 316.73169 * 22 21 19 40 40 H 1.09008 * 108.77720 * 194.72164 * 22 21 19 41 41 H 1.09004 * 109.35838 * 182.88923 * 23 22 21 42 42 H 1.09001 * 109.36092 * 63.30527 * 23 22 21 43 43 H 1.09004 * 117.53770 * 355.69977 * 26 24 23 44 44 H 1.08993 * 117.53346 * 140.93668 * 26 24 23 45 45 H 1.08001 * 120.03116 * 180.27953 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 2.4969 2.0465 -1.4001 5 1 1.4469 2.6526 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 3.0890 -1.2007 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0702 -3.5046 0.1057 11 6 3.4576 -3.4393 0.0927 12 6 4.2028 -4.5966 0.2015 13 6 3.5691 -5.8196 0.3285 14 6 2.1880 -5.8884 0.3364 15 6 1.5016 -7.2234 0.4698 16 6 1.2657 -7.8059 -0.8999 17 8 1.6204 -7.1972 -1.8871 18 7 0.6614 -9.0038 -1.0278 19 6 0.4315 -9.5698 -2.3593 20 1 0.2008 -8.7650 -3.0573 21 6 1.6950 -10.2936 -2.8248 22 6 1.9295 -11.5047 -1.8333 23 6 0.9264 -12.5858 -2.2358 24 6 -0.4950 -12.0296 -2.1858 25 1 -1.2033 -12.6099 -1.5946 26 6 -1.0173 -11.3963 -3.4846 27 6 -0.7433 -10.5336 -2.2989 28 1 -1.6158 -10.1538 -1.7674 29 6 1.4370 -4.7342 0.2280 30 1 -0.4850 0.8399 0.0004 31 1 3.9530 -2.4844 -0.0025 32 1 5.2816 -4.5465 0.1919 33 1 4.1542 -6.7230 0.4179 34 1 0.5464 -7.0916 0.9780 35 1 2.1310 -7.8993 1.0485 36 1 0.3780 -9.4908 -0.2383 37 1 1.5622 -10.6388 -3.8501 38 1 2.5461 -9.6149 -2.7717 39 1 1.7744 -11.2318 -0.7895 40 1 2.9445 -11.8782 -1.9696 41 1 1.0088 -13.4287 -1.5496 42 1 1.1466 -12.9241 -3.2483 43 1 -0.3244 -11.3209 -4.3227 44 1 -2.0591 -11.5764 -3.7495 45 1 0.3584 -4.7882 0.2387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838259975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:03 Heat of formation + Delta-G solvation = -24.575350 kcal Electronic energy + Delta-G solvation = -25451.968232 eV Core-core repulsion = 21821.294323 eV Total energy + Delta-G solvation = -3630.673909 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.59475 -39.27745 -38.50080 -36.40682 -34.43349 -32.86260 -32.34266 -31.95373 -29.85183 -29.04677 -26.93627 -25.22641 -24.50705 -23.12221 -21.64851 -21.49571 -21.13481 -20.02200 -18.88732 -17.57814 -17.15071 -16.82735 -16.51552 -15.62483 -15.38930 -14.95777 -14.59245 -14.34230 -14.30347 -13.91152 -13.78066 -13.54157 -13.44747 -13.27842 -12.87027 -12.60997 -12.54022 -12.31879 -11.85271 -11.73489 -11.49664 -11.37565 -11.26016 -11.21237 -10.81050 -10.76716 -10.71270 -10.55047 -10.40006 -10.38392 -9.95853 -9.61156 -9.26642 -9.02259 -8.77388 -7.98479 -7.14227 -6.37883 -3.96773 2.17042 2.47019 2.85349 3.11990 3.17665 3.18522 3.22677 3.52049 4.02350 4.25235 4.35992 4.54434 4.60430 4.73095 4.81707 4.94493 4.96571 5.02301 5.15289 5.16893 5.17947 5.27677 5.34994 5.43332 5.54790 5.56980 5.62379 5.67562 5.73912 5.78660 5.82261 5.87211 5.95629 6.00755 6.01319 6.05885 6.25258 6.41490 6.51307 6.73650 6.99602 7.14432 7.34650 7.44178 7.51246 7.56487 7.90905 8.07442 8.41103 9.07985 9.79665 10.80577 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.026700 B = 0.002442 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.445007 B =11464.071129 C =12050.930612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.231 4.231 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.032 4.032 15 C -0.094 4.094 16 C 0.514 3.486 17 O -0.519 6.519 18 N -0.731 5.731 19 C 0.176 3.824 20 H 0.089 0.911 21 C -0.134 4.134 22 C -0.116 4.116 23 C -0.091 4.091 24 C -0.149 4.149 25 H 0.104 0.896 26 C -0.172 4.172 27 C -0.148 4.148 28 H 0.105 0.895 29 C -0.175 4.175 30 H 0.269 0.731 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.398 0.602 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.774 -24.597 -1.364 24.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.102 3.898 11 C -0.250 4.250 12 C -0.093 4.093 13 C -0.215 4.215 14 C -0.032 4.032 15 C -0.134 4.134 16 C 0.301 3.699 17 O -0.393 6.393 18 N -0.384 5.384 19 C 0.072 3.928 20 H 0.107 0.893 21 C -0.172 4.172 22 C -0.154 4.154 23 C -0.128 4.128 24 C -0.167 4.167 25 H 0.122 0.878 26 C -0.209 4.209 27 C -0.167 4.167 28 H 0.123 0.877 29 C -0.194 4.194 30 H 0.079 0.921 31 H 0.143 0.857 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.231 0.769 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.600 -23.904 -2.122 24.005 hybrid contribution 0.249 0.588 0.309 0.710 sum 0.849 -23.315 -1.813 23.401 Atomic orbital electron populations 1.70038 1.05930 1.27512 1.46598 1.25269 0.95826 0.98757 0.96716 0.85725 0.78896 0.80197 0.78676 1.19929 1.20312 1.19235 1.21314 0.91772 0.80886 1.52661 0.89149 1.83977 1.34218 1.11368 1.78853 1.19277 0.90243 0.87962 0.92365 1.21171 0.93842 0.98956 1.11044 1.20672 0.98339 0.92351 0.97984 1.20341 0.93313 0.96865 1.11006 1.18662 0.93210 0.91792 0.99571 1.20592 1.02522 0.95845 0.94442 1.20748 0.77031 0.80213 0.91918 1.90755 1.48984 1.59713 1.39854 1.46074 1.62752 1.20957 1.08604 1.20115 0.92702 0.94612 0.85391 0.89279 1.22887 0.98250 0.97457 0.98615 1.22381 0.98365 0.95358 0.99273 1.21085 0.92270 0.97800 1.01661 1.22238 0.98226 0.94957 1.01289 0.87793 1.22635 1.02336 1.03726 0.92234 1.21527 0.99949 0.91690 1.03530 0.87686 1.19941 0.99039 0.89992 1.10445 0.92134 0.85654 0.87530 0.87995 0.88343 0.88490 0.76850 0.90825 0.90984 0.91118 0.92079 0.91758 0.91671 0.88428 0.88736 0.86882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.05 13.67 55.48 0.76 -25.29 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 21.10 29.55 -169.99 -5.02 16.07 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.39 -11.28 9.49 30.89 0.29 -10.98 16 8 H 0.09 2.43 5.20 -52.48 -0.27 2.15 16 9 O -0.18 -5.36 9.76 0.05 0.00 -5.36 16 10 C 0.15 3.95 6.65 -39.11 -0.26 3.69 16 11 C -0.23 -5.32 9.17 -39.40 -0.36 -5.68 16 12 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 13 C -0.20 -3.62 9.70 -39.53 -0.38 -4.01 16 14 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16 15 C -0.09 -1.27 5.83 -29.04 -0.17 -1.44 16 16 C 0.51 7.45 7.77 -10.99 -0.09 7.36 16 17 O -0.52 -10.14 15.70 5.56 0.09 -10.06 16 18 N -0.73 -7.56 4.33 -54.33 -0.24 -7.79 16 19 C 0.18 1.80 2.63 -68.47 -0.18 1.62 16 20 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 21 C -0.13 -1.28 5.51 -23.90 -0.13 -1.41 16 22 C -0.12 -0.88 6.08 -23.90 -0.15 -1.02 16 23 C -0.09 -0.58 5.76 -26.94 -0.16 -0.74 16 24 C -0.15 -0.98 6.29 -90.90 -0.57 -1.55 16 25 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 26 C -0.17 -1.20 9.46 -28.28 -0.27 -1.47 16 27 C -0.15 -1.17 5.38 -93.45 -0.50 -1.67 16 28 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 29 C -0.17 -3.92 9.65 -39.40 -0.38 -4.30 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 32 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 35 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 36 H 0.40 2.97 8.40 -40.82 -0.34 2.62 16 37 H 0.07 0.64 6.94 -51.93 -0.36 0.28 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.53 7.35 -51.93 -0.38 0.15 16 40 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.41 8.06 -51.93 -0.42 -0.01 16 43 H 0.10 0.69 7.03 -51.93 -0.37 0.33 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.11 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -34.44 367.30 -9.74 -44.18 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.61 Total: 6.26 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -4.25 Total: -23.55 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.52 Total: -33.08 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.09 Total: -15.42 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.44 -9.74 -44.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838259975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.600 kcal (2) G-P(sol) polarization free energy of solvation -34.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds