Wall clock time and date at job start Tue Mar 31 2020 10:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86805 * 119.99577 * 2 1 4 4 H 1.48497 * 109.46903 * 270.00036 * 3 2 1 5 5 H 1.48494 * 109.46957 * 30.00349 * 3 2 1 6 6 H 1.48503 * 109.46620 * 150.00282 * 3 2 1 7 7 C 1.38654 * 120.00401 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00036 * 180.02562 * 7 2 1 9 9 O 1.34824 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.35756 * 117.00262 * 185.06321 * 9 7 2 11 11 C 1.38902 * 120.06455 * 354.48525 * 10 9 7 12 12 C 1.38074 * 119.92947 * 179.97438 * 11 10 9 13 13 C 1.38321 * 120.07149 * 359.74356 * 12 11 10 14 14 C 1.38282 * 120.13733 * 0.51432 * 13 12 11 15 15 C 1.50701 * 119.96841 * 179.76787 * 14 13 12 16 16 C 1.50697 * 109.46806 * 269.72118 * 15 14 13 17 17 O 1.21280 * 120.00261 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99870 * 179.97438 * 16 15 14 19 19 C 1.46503 * 120.00002 * 179.97438 * 18 16 15 20 20 H 1.09000 * 109.26365 * 324.50384 * 19 18 16 21 21 C 1.52875 * 109.26717 * 83.97062 * 19 18 16 22 22 C 1.58262 * 107.10018 * 64.10414 * 21 19 18 23 23 C 1.52876 * 106.19788 * 76.81690 * 22 21 19 24 24 C 1.52716 * 110.15335 * 303.09182 * 23 22 21 25 25 H 1.08996 * 115.38976 * 232.83348 * 24 23 22 26 26 C 1.53652 * 116.02930 * 90.19941 * 24 23 22 27 27 C 1.49171 * 60.26524 * 248.70839 * 26 24 23 28 28 H 1.08999 * 116.23918 * 253.37387 * 27 26 24 29 29 C 1.38129 * 120.06451 * 359.48528 * 14 13 12 30 30 H 0.96992 * 120.00552 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.03704 * 359.95939 * 11 10 9 32 32 H 1.08006 * 119.96733 * 180.02562 * 12 11 10 33 33 H 1.08001 * 119.93562 * 180.27753 * 13 12 11 34 34 H 1.09002 * 109.47193 * 149.72439 * 15 14 13 35 35 H 1.08998 * 109.47076 * 29.71882 * 15 14 13 36 36 H 0.96995 * 120.00407 * 0.02562 * 18 16 15 37 37 H 1.09000 * 109.61487 * 185.10775 * 21 19 18 38 38 H 1.08994 * 109.61691 * 305.64709 * 21 19 18 39 39 H 1.09000 * 112.78431 * 316.73169 * 22 21 19 40 40 H 1.09008 * 108.77720 * 194.72164 * 22 21 19 41 41 H 1.09004 * 109.35838 * 182.88923 * 23 22 21 42 42 H 1.09001 * 109.36092 * 63.30527 * 23 22 21 43 43 H 1.09004 * 117.53770 * 355.69977 * 26 24 23 44 44 H 1.08993 * 117.53346 * 140.93668 * 26 24 23 45 45 H 1.08001 * 120.03116 * 180.27953 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 2.4969 2.0465 -1.4001 5 1 1.4469 2.6526 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 3.0890 -1.2007 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0702 -3.5046 0.1057 11 6 3.4576 -3.4393 0.0927 12 6 4.2028 -4.5966 0.2015 13 6 3.5691 -5.8196 0.3285 14 6 2.1880 -5.8884 0.3364 15 6 1.5016 -7.2234 0.4698 16 6 1.2657 -7.8059 -0.8999 17 8 1.6204 -7.1972 -1.8871 18 7 0.6614 -9.0038 -1.0278 19 6 0.4315 -9.5698 -2.3593 20 1 0.2008 -8.7650 -3.0573 21 6 1.6950 -10.2936 -2.8248 22 6 1.9295 -11.5047 -1.8333 23 6 0.9264 -12.5858 -2.2358 24 6 -0.4950 -12.0296 -2.1858 25 1 -1.2033 -12.6099 -1.5946 26 6 -1.0173 -11.3963 -3.4846 27 6 -0.7433 -10.5336 -2.2989 28 1 -1.6158 -10.1538 -1.7674 29 6 1.4370 -4.7342 0.2280 30 1 -0.4850 0.8399 0.0004 31 1 3.9530 -2.4844 -0.0025 32 1 5.2816 -4.5465 0.1919 33 1 4.1542 -6.7230 0.4179 34 1 0.5464 -7.0916 0.9780 35 1 2.1310 -7.8993 1.0485 36 1 0.3780 -9.4908 -0.2383 37 1 1.5622 -10.6388 -3.8501 38 1 2.5461 -9.6149 -2.7717 39 1 1.7744 -11.2318 -0.7895 40 1 2.9445 -11.8782 -1.9696 41 1 1.0088 -13.4287 -1.5496 42 1 1.1466 -12.9241 -3.2483 43 1 -0.3244 -11.3209 -4.3227 44 1 -2.0591 -11.5764 -3.7495 45 1 0.3584 -4.7882 0.2387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838259975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:02 Heat of formation + Delta-G solvation = -45.954348 kcal Electronic energy + Delta-G solvation = -25452.895295 eV Core-core repulsion = 21821.294323 eV Total energy + Delta-G solvation = -3631.600972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.49621 -40.76520 -39.80721 -38.15412 -35.41570 -34.34605 -33.63804 -33.32356 -31.03865 -30.52974 -28.29191 -27.23756 -25.33216 -23.77085 -23.28697 -22.75638 -22.06462 -21.27257 -19.77330 -19.36685 -18.73462 -18.05864 -17.29644 -16.84123 -16.60248 -16.49486 -16.08236 -15.92873 -15.51283 -15.19805 -15.02313 -14.71424 -14.63987 -14.29183 -14.18185 -14.01398 -13.59662 -13.57130 -13.27846 -12.96855 -12.79253 -12.46762 -12.41303 -12.38905 -12.22162 -12.10351 -12.07827 -11.88908 -11.47354 -11.20491 -11.03413 -10.82985 -10.74941 -10.57144 -9.99617 -9.62849 -8.97507 -8.47266 -6.15905 0.52722 0.76287 1.33428 1.43462 1.51661 1.71937 2.17128 2.20092 2.82170 2.89829 3.18803 3.44850 3.62027 3.74127 3.82070 3.93985 4.04016 4.10860 4.11621 4.21387 4.30555 4.32593 4.45088 4.46353 4.58309 4.59028 4.61385 4.65795 4.74145 4.82818 4.89215 4.95922 5.07947 5.08424 5.13010 5.17192 5.29764 5.30576 5.32309 5.34411 5.47503 5.59671 5.65624 5.73199 5.76021 6.02803 6.24240 6.64711 6.97218 7.36569 7.79157 8.76495 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.026700 B = 0.002442 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.445007 B =11464.071129 C =12050.930612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.235 6.235 10 C 0.112 3.888 11 C -0.247 4.247 12 C -0.074 4.074 13 C -0.180 4.180 14 C -0.025 4.025 15 C -0.091 4.091 16 C 0.515 3.485 17 O -0.580 6.580 18 N -0.708 5.708 19 C 0.176 3.824 20 H 0.053 0.947 21 C -0.132 4.132 22 C -0.110 4.110 23 C -0.090 4.090 24 C -0.133 4.133 25 H 0.120 0.880 26 C -0.175 4.175 27 C -0.157 4.157 28 H 0.108 0.892 29 C -0.194 4.194 30 H 0.273 0.727 31 H 0.118 0.882 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.120 0.880 35 H 0.144 0.856 36 H 0.416 0.584 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.414 -27.968 -0.198 28.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.176 1.176 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.142 6.142 10 C 0.062 3.938 11 C -0.267 4.267 12 C -0.092 4.092 13 C -0.199 4.199 14 C -0.025 4.025 15 C -0.130 4.130 16 C 0.302 3.698 17 O -0.459 6.459 18 N -0.361 5.361 19 C 0.072 3.928 20 H 0.071 0.929 21 C -0.170 4.170 22 C -0.148 4.148 23 C -0.127 4.127 24 C -0.151 4.151 25 H 0.138 0.862 26 C -0.213 4.213 27 C -0.175 4.175 28 H 0.126 0.874 29 C -0.213 4.213 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.138 0.862 35 H 0.162 0.838 36 H 0.254 0.746 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.122 0.878 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.244 -27.378 -0.923 27.485 hybrid contribution -0.193 1.277 -0.071 1.294 sum 2.051 -26.101 -0.994 26.200 Atomic orbital electron populations 1.70188 1.08057 1.28775 1.49132 1.26626 0.96898 1.02774 0.95886 0.84571 0.77840 0.74441 0.79220 1.18943 1.19315 1.17555 1.21830 0.92502 0.81515 1.53185 0.88258 1.83935 1.35921 1.12576 1.81771 1.19880 0.91680 0.87918 0.94354 1.21294 0.93123 1.00244 1.12000 1.21134 1.00217 0.91508 0.96327 1.20970 0.93509 0.98017 1.07364 1.19208 0.93773 0.92895 0.96657 1.20706 1.04192 0.93597 0.94547 1.20909 0.76624 0.80777 0.91469 1.90749 1.51943 1.61507 1.41681 1.45872 1.60865 1.19700 1.09657 1.20085 0.94207 0.94148 0.84400 0.92919 1.22841 0.96574 0.97855 0.99763 1.22363 0.99151 0.94474 0.98792 1.21110 0.91547 0.97788 1.02288 1.22337 0.98739 0.93447 1.00552 0.86161 1.22716 1.02951 1.03400 0.92226 1.21409 0.98999 0.92186 1.04935 0.87407 1.20220 0.99229 0.90538 1.11327 0.91843 0.86471 0.83706 0.83515 0.86161 0.83835 0.74627 0.90400 0.93795 0.90530 0.91586 0.90040 0.91488 0.88835 0.87806 0.87694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.75 13.67 21.61 0.30 -58.45 16 2 C -0.02 -1.47 5.49 84.83 0.47 -1.01 16 3 Si 1.02 44.56 29.55 68.60 2.03 46.59 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 6 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.41 -25.38 9.49 67.92 0.64 -24.74 16 8 H 0.10 5.61 5.20 -2.91 -0.02 5.60 16 9 O -0.24 -15.03 9.76 -22.75 -0.22 -15.25 16 10 C 0.11 6.01 6.65 22.58 0.15 6.16 16 11 C -0.25 -11.68 9.17 22.39 0.21 -11.47 16 12 C -0.07 -2.76 10.04 22.25 0.22 -2.54 16 13 C -0.18 -6.06 9.70 22.30 0.22 -5.85 16 14 C -0.02 -0.88 4.37 -19.88 -0.09 -0.97 16 15 C -0.09 -2.16 5.83 29.10 0.17 -1.99 16 16 C 0.51 14.15 7.77 87.66 0.68 14.83 16 17 O -0.58 -22.92 15.70 -3.03 -0.05 -22.97 16 18 N -0.71 -13.30 4.33 -444.19 -1.92 -15.22 16 19 C 0.18 3.48 2.63 44.64 0.12 3.60 16 20 H 0.05 1.44 7.58 -2.39 -0.02 1.42 16 21 C -0.13 -2.40 5.51 32.43 0.18 -2.22 16 22 C -0.11 -1.35 6.08 32.43 0.20 -1.15 16 23 C -0.09 -0.84 5.76 30.46 0.18 -0.67 16 24 C -0.13 -1.33 6.29 -10.98 -0.07 -1.40 16 25 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 26 C -0.18 -2.13 9.46 29.59 0.28 -1.85 16 27 C -0.16 -2.19 5.38 -12.63 -0.07 -2.26 16 28 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 29 C -0.19 -8.97 9.65 22.39 0.22 -8.76 16 30 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 31 H 0.12 5.58 5.64 -2.91 -0.02 5.56 16 32 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 33 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 34 H 0.12 2.40 8.08 -2.39 -0.02 2.38 16 35 H 0.14 2.13 8.08 -2.39 -0.02 2.11 16 36 H 0.42 4.79 8.40 -92.71 -0.78 4.01 16 37 H 0.08 1.32 6.94 -2.39 -0.02 1.31 16 38 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 0.85 7.35 -2.39 -0.02 0.83 16 40 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.07 0.64 8.06 -2.39 -0.02 0.62 16 43 H 0.09 1.22 7.03 -2.39 -0.02 1.20 16 44 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -83.38 367.30 4.05 -79.32 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.23 Total: 28.27 kcal Atomic # 6 Polarization: -45.98 SS G_CDS: 3.70 Total: -42.28 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -1.63 Total: -73.68 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -0.27 Total: -38.22 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -83.38 4.05 -79.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838259975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.369 kcal (2) G-P(sol) polarization free energy of solvation -83.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds