Wall clock time and date at job start Tue Mar 31 2020 10:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47385 * 191.02517 * 3 2 1 5 5 C 1.53000 * 109.47006 * 59.99852 * 4 3 2 6 6 O 1.42898 * 109.47233 * 180.02562 * 5 4 3 7 7 C 1.35902 * 116.99948 * 180.02562 * 6 5 4 8 8 C 1.38831 * 120.02368 * 0.02618 * 7 6 5 9 9 C 1.38182 * 120.08190 * 179.97438 * 8 7 6 10 10 C 1.38150 * 120.12616 * 359.76607 * 9 8 7 11 11 C 1.38898 * 120.03893 * 0.50689 * 10 9 8 12 12 O 1.35751 * 120.03862 * 179.74507 * 11 10 9 13 13 C 1.34829 * 116.99660 * 174.18943 * 12 11 10 14 14 H 1.08001 * 120.00139 * 5.05352 * 13 12 11 15 15 C 1.38657 * 119.99856 * 185.05736 * 13 12 11 16 16 N 1.31554 * 119.99932 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00075 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46981 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47233 * 119.99508 * 17 15 13 20 20 H 1.48493 * 109.47365 * 239.99909 * 17 15 13 21 21 C 1.38575 * 120.01962 * 179.97438 * 7 6 5 22 22 C 1.53003 * 109.47583 * 311.02688 * 3 2 1 23 23 C 1.52997 * 109.46745 * 59.99892 * 22 3 2 24 24 C 1.53001 * 109.47361 * 60.00209 * 23 22 3 25 25 C 1.52995 * 109.47100 * 299.99805 * 24 23 22 26 26 C 1.52998 * 109.47349 * 60.00080 * 25 24 23 27 27 H 1.09005 * 109.47366 * 300.00564 * 4 3 2 28 28 H 1.08996 * 109.47706 * 180.02562 * 4 3 2 29 29 H 1.09006 * 109.47188 * 60.00382 * 5 4 3 30 30 H 1.08996 * 109.47405 * 300.00817 * 5 4 3 31 31 H 1.08006 * 119.95329 * 359.97228 * 8 7 6 32 32 H 1.08002 * 119.93383 * 180.02562 * 9 8 7 33 33 H 1.08006 * 119.98231 * 180.25958 * 10 9 8 34 34 H 0.96998 * 119.99974 * 180.02562 * 16 15 13 35 35 H 1.07991 * 120.05985 * 0.04906 * 21 7 6 36 36 H 1.08996 * 109.47027 * 180.02562 * 22 3 2 37 37 H 1.08995 * 109.46647 * 300.00285 * 22 3 2 38 38 H 1.09003 * 109.47340 * 300.00200 * 23 22 3 39 39 H 1.09005 * 109.47212 * 180.02562 * 23 22 3 40 40 H 1.08998 * 109.47098 * 179.97438 * 24 23 22 41 41 H 1.09003 * 109.46901 * 59.99722 * 24 23 22 42 42 H 1.09003 * 109.47176 * 299.99749 * 25 24 23 43 43 H 1.09005 * 109.47257 * 179.97438 * 25 24 23 44 44 H 1.08996 * 109.47860 * 179.97438 * 26 25 24 45 45 H 1.08997 * 109.47310 * 59.99263 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1174 1.4167 0.2759 5 6 2.6071 1.8855 1.6400 6 8 3.0824 3.2083 1.8974 7 6 2.7174 3.7765 3.0767 8 6 1.9180 3.0739 3.9683 9 6 1.5465 3.6502 5.1680 10 6 1.9731 4.9250 5.4863 11 6 2.7683 5.6348 4.5957 12 8 3.1832 6.8895 4.9062 13 6 4.0492 7.4759 4.0553 14 1 4.3181 6.9823 3.1331 15 6 4.5945 8.7128 4.3642 16 7 4.2665 9.3143 5.4873 17 14 5.7936 9.5257 3.1850 18 1 5.9941 8.6510 2.0017 19 1 5.2457 10.8340 2.7455 20 1 7.0939 9.7385 3.8698 21 6 3.1437 5.0571 3.3907 22 6 3.1185 -0.9460 1.0882 23 6 2.6091 -2.3620 0.8123 24 6 3.1193 -2.8308 -0.5519 25 6 2.6088 -1.8842 -1.6400 26 6 3.1181 -0.4681 -1.3642 27 1 2.7537 2.0912 -0.4994 28 1 4.2073 1.4173 0.2754 29 1 2.9708 1.2111 2.4153 30 1 1.5172 1.8850 1.6400 31 1 1.5861 2.0756 3.7237 32 1 0.9250 3.1013 5.8599 33 1 1.6849 5.3716 6.4265 34 1 4.6477 10.1797 5.7032 35 1 3.7655 5.6051 2.6985 36 1 4.2084 -0.9451 1.0884 37 1 2.7550 -0.6120 2.0600 38 1 1.5191 -2.3626 0.8123 39 1 2.9724 -3.0364 1.5878 40 1 2.7567 -3.8398 -0.7482 41 1 4.2093 -2.8303 -0.5519 42 1 1.5188 -1.8847 -1.6400 43 1 2.9726 -2.2179 -2.6119 44 1 2.7549 0.2063 -2.1397 45 1 4.2081 -0.4676 -1.3642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842110424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:02 Heat of formation + Delta-G solvation = -57.353568 kcal Electronic energy + Delta-G solvation = -25393.465974 eV Core-core repulsion = 21761.370695 eV Total energy + Delta-G solvation = -3632.095279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.37154 -40.75295 -39.67688 -37.35955 -36.86723 -34.60990 -34.25942 -31.84764 -31.44282 -30.37570 -29.29125 -27.35261 -25.28456 -23.81075 -23.56638 -23.34850 -22.34194 -21.32862 -19.98126 -19.47702 -17.62449 -17.51227 -17.01677 -16.84312 -16.71099 -16.19316 -15.93711 -15.77570 -15.55111 -15.25367 -15.07066 -14.64724 -14.59408 -14.32169 -14.16643 -14.02663 -13.71612 -13.47940 -13.27526 -13.04984 -12.86998 -12.81070 -12.64686 -12.61869 -12.52901 -12.29588 -12.09950 -12.01302 -11.93815 -11.59496 -11.41714 -11.36316 -11.06729 -10.90026 -10.79961 -9.39718 -8.97510 -8.48614 -6.17790 0.56049 0.65656 1.36127 1.44344 1.54893 1.70436 1.73046 2.14955 2.20736 2.79302 2.81541 3.13153 3.46655 3.57887 3.70633 3.81219 3.95142 4.00808 4.08178 4.19372 4.22134 4.27461 4.33042 4.41644 4.44953 4.53000 4.57845 4.61054 4.74220 4.80511 4.86890 4.96332 5.00025 5.07599 5.10877 5.11087 5.16711 5.24566 5.25283 5.39388 5.40351 5.40662 5.53409 5.59354 5.63792 5.91584 6.01433 6.52747 6.53947 6.95919 7.72866 8.74280 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.020143 B = 0.002591 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.746932 B =10805.960513 C =11661.768966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.236 3.764 3 C 0.051 3.949 4 C -0.104 4.104 5 C 0.047 3.953 6 O -0.325 6.325 7 C 0.170 3.830 8 C -0.278 4.278 9 C -0.030 4.030 10 C -0.236 4.236 11 C 0.151 3.849 12 O -0.222 6.222 13 C -0.416 4.416 14 H 0.100 0.900 15 C -0.020 4.020 16 N -0.918 5.918 17 Si 1.019 2.981 18 H -0.252 1.252 19 H -0.268 1.268 20 H -0.265 1.265 21 C -0.282 4.282 22 C -0.115 4.115 23 C -0.125 4.125 24 C -0.118 4.118 25 C -0.125 4.125 26 C -0.104 4.104 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.147 0.853 32 H 0.160 0.840 33 H 0.119 0.881 34 H 0.274 0.726 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.070 0.930 38 H 0.035 0.965 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.035 0.965 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.522 -25.159 -13.593 28.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.082 4.082 3 C 0.047 3.953 4 C -0.142 4.142 5 C -0.028 4.028 6 O -0.239 6.239 7 C 0.124 3.876 8 C -0.297 4.297 9 C -0.047 4.047 10 C -0.256 4.256 11 C 0.099 3.901 12 O -0.128 6.128 13 C -0.492 4.492 14 H 0.117 0.883 15 C -0.218 4.218 16 N -0.555 5.555 17 Si 0.838 3.162 18 H -0.176 1.176 19 H -0.193 1.193 20 H -0.190 1.190 21 C -0.302 4.302 22 C -0.153 4.153 23 C -0.163 4.163 24 C -0.155 4.155 25 C -0.163 4.163 26 C -0.143 4.143 27 H 0.099 0.901 28 H 0.142 0.858 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.164 0.836 32 H 0.177 0.823 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.054 0.946 43 H 0.103 0.897 44 H 0.092 0.908 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.884 -24.757 -13.461 28.194 hybrid contribution 0.119 0.787 -0.029 0.796 sum 1.003 -23.971 -13.490 27.524 Atomic orbital electron populations 1.81248 1.14649 1.10415 1.10158 1.29702 0.95569 0.91252 0.91630 1.18586 0.79464 0.96506 1.00725 1.21648 1.04570 0.93377 0.94633 1.23161 0.98284 0.81450 0.99856 1.85981 1.71211 1.32076 1.34604 1.18633 0.92733 0.91167 0.85055 1.21115 1.08530 1.02620 0.97405 1.20897 0.95641 0.92430 0.95781 1.20447 1.07146 0.97105 1.00889 1.19562 0.92709 0.84988 0.92812 1.83968 1.56429 1.23708 1.48714 1.21866 1.22147 1.03105 1.02035 0.88255 1.26599 0.99771 0.96163 0.99251 1.70182 1.44043 1.16442 1.24871 0.84532 0.76555 0.78047 0.77095 1.17573 1.19263 1.18993 1.20315 1.12953 0.96741 1.00147 1.21865 1.03820 0.93358 0.96281 1.21606 0.99456 0.96439 0.98775 1.21562 1.02203 0.98472 0.93295 1.21611 0.99448 0.95006 1.00224 1.21710 1.03724 0.96629 0.92196 0.90130 0.85802 0.89439 0.93784 0.83560 0.82277 0.86265 0.91687 0.86212 0.86435 0.91171 0.94573 0.90015 0.91909 0.89342 0.94622 0.89744 0.90763 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.01 18.54 20.00 0.37 -12.63 16 2 C 0.24 4.65 10.09 89.44 0.90 5.55 16 3 C 0.05 0.59 0.51 -53.99 -0.03 0.56 16 4 C -0.10 -1.45 4.62 30.59 0.14 -1.31 16 5 C 0.05 1.02 4.13 71.98 0.30 1.31 16 6 O -0.32 -10.40 10.13 -92.44 -0.94 -11.34 16 7 C 0.17 6.48 6.68 22.49 0.15 6.63 16 8 C -0.28 -9.15 9.04 22.40 0.20 -8.95 16 9 C -0.03 -1.01 10.03 22.24 0.22 -0.78 16 10 C -0.24 -10.23 9.99 22.41 0.22 -10.01 16 11 C 0.15 7.74 6.65 22.56 0.15 7.89 16 12 O -0.22 -13.58 9.76 -22.73 -0.22 -13.81 16 13 C -0.42 -24.64 9.49 67.92 0.64 -23.99 16 14 H 0.10 5.51 5.20 -2.91 -0.02 5.50 16 15 C -0.02 -1.14 5.49 84.83 0.47 -0.68 16 16 N -0.92 -56.42 13.67 21.61 0.30 -56.13 16 17 Si 1.02 43.15 29.55 68.60 2.03 45.18 16 18 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 19 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 21 C -0.28 -13.17 9.10 22.49 0.20 -12.97 16 22 C -0.12 -1.00 4.36 30.59 0.13 -0.86 16 23 C -0.13 -1.17 5.70 30.59 0.17 -1.00 16 24 C -0.12 -0.81 5.92 30.59 0.18 -0.63 16 25 C -0.13 -1.06 5.70 30.59 0.17 -0.89 16 26 C -0.10 -0.76 4.71 30.60 0.14 -0.62 16 27 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.54 5.94 -2.38 -0.01 1.52 16 30 H 0.04 1.06 6.75 -2.39 -0.02 1.04 16 31 H 0.15 3.77 6.29 -2.91 -0.02 3.75 16 32 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 33 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 34 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.12 5.84 5.64 -2.92 -0.02 5.82 16 36 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.07 0.71 6.43 -2.39 -0.02 0.69 16 38 H 0.04 0.51 7.23 -2.39 -0.02 0.49 16 39 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 41 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.03 0.48 7.23 -2.39 -0.02 0.46 16 43 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 44 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -77.52 363.59 6.92 -70.60 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 1.00 Total: 18.88 kcal Atomic # 6 Polarization: -45.14 SS G_CDS: 4.39 Total: -40.75 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: 0.67 Total: -68.76 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -1.16 Total: -25.15 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -77.52 6.92 -70.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842110424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.248 kcal (2) G-P(sol) polarization free energy of solvation -77.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds