Wall clock time and date at job start Tue Mar 31 2020 11:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.34238 * 125.03372 * 2 1 4 4 C 1.46494 * 107.01828 * 179.97438 * 3 2 1 5 5 C 1.39656 * 133.94946 * 180.02562 * 4 3 2 6 6 C 1.38050 * 119.60824 * 179.97438 * 5 4 3 7 7 O 1.35984 * 119.86862 * 180.02562 * 6 5 4 8 8 C 1.34245 * 117.00218 * 69.00520 * 7 6 5 9 9 O 1.20827 * 119.99999 * 5.78567 * 8 7 6 10 10 C 1.50704 * 120.00293 * 185.78060 * 8 7 6 11 11 C 1.53001 * 109.47292 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46869 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46869 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47116 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00009 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99975 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00255 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00057 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47363 * 89.99726 * 18 16 14 20 20 H 1.48504 * 109.47146 * 209.99950 * 18 16 14 21 21 H 1.48502 * 109.47215 * 329.99656 * 18 16 14 22 22 C 1.39285 * 120.26572 * 359.97164 * 6 5 4 23 23 C 1.37662 * 120.62074 * 359.82747 * 22 6 5 24 24 C 1.39111 * 119.99506 * 0.39600 * 23 22 6 25 25 N 1.36810 * 125.03020 * 179.97438 * 2 1 3 26 26 C 1.46491 * 125.07150 * 0.05937 * 25 2 1 27 27 H 1.09003 * 109.47128 * 90.02376 * 1 2 3 28 28 H 1.09004 * 109.47609 * 210.02467 * 1 2 3 29 29 H 1.09003 * 109.47366 * 330.02613 * 1 2 3 30 30 H 1.08008 * 126.49215 * 359.94032 * 3 2 1 31 31 H 1.08002 * 120.19459 * 359.97438 * 5 4 3 32 32 H 1.09000 * 109.46934 * 300.00845 * 10 8 7 33 33 H 1.08997 * 109.46687 * 60.00045 * 10 8 7 34 34 H 1.08996 * 109.46985 * 300.00168 * 11 10 8 35 35 H 1.09005 * 109.46742 * 60.00184 * 11 10 8 36 36 H 1.08995 * 109.46904 * 300.00078 * 12 11 10 37 37 H 1.08997 * 109.46988 * 59.99967 * 12 11 10 38 38 H 1.09002 * 109.47259 * 300.00415 * 13 12 11 39 39 H 1.09005 * 109.46742 * 60.00076 * 13 12 11 40 40 H 0.97001 * 120.00336 * 179.97438 * 17 16 14 41 41 H 1.08009 * 119.68738 * 180.02562 * 22 6 5 42 42 H 1.08007 * 120.00057 * 180.02562 * 23 22 6 43 43 H 1.08997 * 109.47069 * 269.97450 * 26 25 2 44 44 H 1.09001 * 109.47228 * 29.97486 * 26 25 2 45 45 H 1.08997 * 109.47169 * 149.97490 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2775 1.0992 0.0000 4 6 3.6706 0.6461 0.0006 5 6 4.9033 1.3025 0.0014 6 6 6.0695 0.5637 0.0024 7 8 7.2726 1.1974 0.0036 8 6 7.6111 1.8604 1.1207 9 8 6.9093 1.7891 2.1017 10 6 8.8666 2.6935 1.1514 11 6 9.0180 3.3372 2.5312 12 6 10.2923 4.1834 2.5620 13 6 10.4433 4.8276 3.9416 14 6 11.6987 5.6607 3.9722 15 1 12.3263 5.7240 3.0956 16 6 12.0461 6.3420 5.1194 17 7 13.1414 7.0695 5.1460 18 14 10.9609 6.2320 6.6359 19 1 11.4011 5.0908 7.4778 20 1 11.0689 7.4921 7.4143 21 1 9.5500 6.0258 6.2211 22 6 6.0186 -0.8283 0.0032 23 6 4.8092 -1.4857 0.0067 24 6 3.6228 -0.7594 0.0010 25 7 2.2922 -1.1203 0.0005 26 6 1.7936 -2.4977 -0.0001 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 1.9353 2.1236 -0.0009 31 1 4.9440 2.3817 0.0011 32 1 9.7292 2.0581 0.9505 33 1 8.8043 3.4724 0.3915 34 1 8.1554 3.9724 2.7323 35 1 9.0804 2.5578 3.2907 36 1 11.1550 3.5485 2.3606 37 1 10.2294 4.9627 1.8025 38 1 9.5804 5.4626 4.1425 39 1 10.5060 4.0486 4.7014 40 1 13.3856 7.5492 5.9530 41 1 6.9368 -1.3971 0.0044 42 1 4.7815 -2.5655 0.0077 43 1 1.6695 -2.8397 1.0274 44 1 0.8333 -2.5363 -0.5144 45 1 2.5070 -3.1421 -0.5138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842398502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:28 Heat of formation + Delta-G solvation = -36.299303 kcal Electronic energy + Delta-G solvation = -24553.343648 eV Core-core repulsion = 20922.161350 eV Total energy + Delta-G solvation = -3631.182297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.82535 -40.95014 -37.87395 -36.20797 -35.09680 -33.40348 -32.62993 -31.44114 -30.56869 -30.00614 -27.48014 -26.39823 -26.06138 -23.43368 -22.25122 -21.67552 -20.40615 -20.09264 -20.06718 -18.06457 -17.50140 -16.87593 -16.56845 -16.56206 -15.91980 -15.72983 -15.00363 -14.54728 -14.34289 -14.12559 -13.90429 -13.70119 -13.53102 -13.26918 -13.22224 -12.95563 -12.68867 -12.64740 -12.53130 -12.37059 -12.20666 -11.82741 -11.76174 -11.26273 -11.14861 -10.78420 -10.77237 -10.57356 -10.47159 -9.91987 -9.86454 -9.66738 -9.53417 -9.12600 -8.48856 -8.30562 -7.89089 -5.99873 -3.97520 0.77672 1.10765 2.21858 2.31990 2.38115 2.77513 3.35771 3.42859 3.48510 3.63949 4.19829 4.25625 4.36438 4.50472 4.60052 4.68780 4.74903 4.78496 4.91835 5.02411 5.04686 5.11501 5.13737 5.21004 5.23288 5.34780 5.37196 5.46271 5.59109 5.72167 5.74269 5.95938 5.96474 6.06827 6.14568 6.31280 6.34197 6.45289 6.60124 6.62950 6.77011 6.87973 6.93726 6.96905 7.36928 7.49563 7.84528 7.89790 8.58624 9.05164 9.63258 11.13530 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.024818 B = 0.002011 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.963220 B =13922.822744 C =14493.392009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.079 3.921 3 C -0.200 4.200 4 C -0.092 4.092 5 C -0.073 4.073 6 C 0.061 3.939 7 O -0.295 6.295 8 C 0.454 3.546 9 O -0.488 6.488 10 C -0.109 4.109 11 C -0.112 4.112 12 C -0.102 4.102 13 C -0.016 4.016 14 C -0.520 4.520 15 H 0.072 0.928 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.096 4.096 23 C -0.115 4.115 24 C 0.096 3.904 25 N -0.486 5.486 26 C 0.077 3.923 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.128 0.872 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.012 0.988 40 H 0.262 0.738 41 H 0.135 0.865 42 H 0.126 0.874 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.365 -20.762 -15.049 36.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C -0.224 4.224 4 C -0.097 4.097 5 C -0.092 4.092 6 C 0.019 3.981 7 O -0.211 6.211 8 C 0.297 3.703 9 O -0.372 6.372 10 C -0.146 4.146 11 C -0.149 4.149 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.558 4.558 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.116 4.116 23 C -0.135 4.135 24 C -0.009 4.009 25 N -0.171 5.171 26 C -0.064 4.064 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.166 0.834 31 H 0.146 0.854 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.153 0.847 42 H 0.144 0.856 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -26.645 -21.010 -14.609 36.943 hybrid contribution -0.478 -0.086 0.916 1.037 sum -27.123 -21.096 -13.694 36.990 Atomic orbital electron populations 1.20477 0.87625 1.03798 1.03101 1.20339 0.93559 0.85324 1.03515 1.21458 0.89982 0.97898 1.13096 1.18906 0.93196 0.91832 1.05751 1.20611 0.89931 0.99879 0.98823 1.18149 0.83355 0.90737 1.05903 1.84693 1.34434 1.61618 1.40346 1.24655 0.87983 0.77428 0.80190 1.90698 1.52635 1.59132 1.34725 1.21603 0.92095 0.98555 1.02392 1.21626 1.00415 0.99746 0.93157 1.21474 0.94431 0.97825 1.00241 1.19580 0.97455 0.95682 0.92575 1.21171 1.06865 1.27822 0.99912 0.91026 1.25043 0.94953 0.94867 0.98753 1.69921 1.24321 1.31574 1.28620 0.86778 0.81937 0.77399 0.83195 1.20326 1.21451 1.18920 1.20684 0.97808 0.92389 1.00719 1.19759 0.88879 0.99016 1.05866 1.18232 0.84339 0.93887 1.04462 1.43756 1.03687 1.05868 1.63739 1.21924 1.01016 0.80466 1.03042 0.90436 0.91365 0.89548 0.83384 0.85427 0.87500 0.87472 0.91489 0.91478 0.92534 0.92510 0.96562 0.97013 0.92810 0.84700 0.85587 0.91251 0.89900 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.42 9.78 36.00 0.35 -0.07 16 2 C 0.08 0.67 6.83 -81.79 -0.56 0.11 16 3 C -0.20 -2.07 10.95 -37.67 -0.41 -2.48 16 4 C -0.09 -1.16 6.37 -105.14 -0.67 -1.83 16 5 C -0.07 -0.99 9.36 -39.12 -0.37 -1.35 16 6 C 0.06 0.82 5.27 -39.26 -0.21 0.62 16 7 O -0.30 -4.06 10.03 -23.76 -0.24 -4.29 16 8 C 0.45 6.68 7.73 36.01 0.28 6.95 16 9 O -0.49 -8.71 15.39 -18.75 -0.29 -9.00 16 10 C -0.11 -1.42 5.81 -27.88 -0.16 -1.58 16 11 C -0.11 -1.84 4.51 -26.73 -0.12 -1.96 16 12 C -0.10 -1.98 5.15 -26.73 -0.14 -2.12 16 13 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 14 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 15 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 16 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.36 13.96 55.43 0.77 -27.59 16 18 Si 0.88 22.35 27.47 -169.99 -4.67 17.68 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 22 C -0.10 -1.10 9.95 -39.40 -0.39 -1.50 16 23 C -0.11 -1.16 9.94 -39.47 -0.39 -1.56 16 24 C 0.10 1.08 6.81 -83.92 -0.57 0.51 16 25 N -0.49 -4.26 3.18 -117.18 -0.37 -4.64 16 26 C 0.08 0.35 10.59 59.84 0.63 0.99 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.23 7.57 -51.93 -0.39 -0.17 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 31 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.15 8.10 -51.93 -0.42 0.72 16 35 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 39 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 42 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.22 7.50 -51.93 -0.39 -0.17 16 45 H 0.08 0.29 8.10 -51.93 -0.42 -0.13 16 LS Contribution 378.66 15.07 5.71 5.71 Total: -1.00 -35.74 378.66 -9.41 -45.15 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -7.05 Total: -3.68 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -3.27 Total: -19.33 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.40 Total: -32.23 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.53 Total: -13.30 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.74 -9.41 -45.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842398502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.846 kcal (2) G-P(sol) polarization free energy of solvation -35.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds