Wall clock time and date at job start Tue Mar 31 2020 11:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.34238 * 125.03372 * 2 1 4 4 C 1.46494 * 107.01828 * 179.97438 * 3 2 1 5 5 C 1.39656 * 133.94946 * 180.02562 * 4 3 2 6 6 C 1.38050 * 119.60824 * 179.97438 * 5 4 3 7 7 O 1.35984 * 119.86862 * 180.02562 * 6 5 4 8 8 C 1.34245 * 117.00218 * 69.00520 * 7 6 5 9 9 O 1.20827 * 119.99999 * 5.78567 * 8 7 6 10 10 C 1.50704 * 120.00293 * 185.78060 * 8 7 6 11 11 C 1.53001 * 109.47292 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46869 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46869 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47116 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00009 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99975 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00255 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00057 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47363 * 89.99726 * 18 16 14 20 20 H 1.48504 * 109.47146 * 209.99950 * 18 16 14 21 21 H 1.48502 * 109.47215 * 329.99656 * 18 16 14 22 22 C 1.39285 * 120.26572 * 359.97164 * 6 5 4 23 23 C 1.37662 * 120.62074 * 359.82747 * 22 6 5 24 24 C 1.39111 * 119.99506 * 0.39600 * 23 22 6 25 25 N 1.36810 * 125.03020 * 179.97438 * 2 1 3 26 26 C 1.46491 * 125.07150 * 0.05937 * 25 2 1 27 27 H 1.09003 * 109.47128 * 90.02376 * 1 2 3 28 28 H 1.09004 * 109.47609 * 210.02467 * 1 2 3 29 29 H 1.09003 * 109.47366 * 330.02613 * 1 2 3 30 30 H 1.08008 * 126.49215 * 359.94032 * 3 2 1 31 31 H 1.08002 * 120.19459 * 359.97438 * 5 4 3 32 32 H 1.09000 * 109.46934 * 300.00845 * 10 8 7 33 33 H 1.08997 * 109.46687 * 60.00045 * 10 8 7 34 34 H 1.08996 * 109.46985 * 300.00168 * 11 10 8 35 35 H 1.09005 * 109.46742 * 60.00184 * 11 10 8 36 36 H 1.08995 * 109.46904 * 300.00078 * 12 11 10 37 37 H 1.08997 * 109.46988 * 59.99967 * 12 11 10 38 38 H 1.09002 * 109.47259 * 300.00415 * 13 12 11 39 39 H 1.09005 * 109.46742 * 60.00076 * 13 12 11 40 40 H 0.97001 * 120.00336 * 179.97438 * 17 16 14 41 41 H 1.08009 * 119.68738 * 180.02562 * 22 6 5 42 42 H 1.08007 * 120.00057 * 180.02562 * 23 22 6 43 43 H 1.08997 * 109.47069 * 269.97450 * 26 25 2 44 44 H 1.09001 * 109.47228 * 29.97486 * 26 25 2 45 45 H 1.08997 * 109.47169 * 149.97490 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2775 1.0992 0.0000 4 6 3.6706 0.6461 0.0006 5 6 4.9033 1.3025 0.0014 6 6 6.0695 0.5637 0.0024 7 8 7.2726 1.1974 0.0036 8 6 7.6111 1.8604 1.1207 9 8 6.9093 1.7891 2.1017 10 6 8.8666 2.6935 1.1514 11 6 9.0180 3.3372 2.5312 12 6 10.2923 4.1834 2.5620 13 6 10.4433 4.8276 3.9416 14 6 11.6987 5.6607 3.9722 15 1 12.3263 5.7240 3.0956 16 6 12.0461 6.3420 5.1194 17 7 13.1414 7.0695 5.1460 18 14 10.9609 6.2320 6.6359 19 1 11.4011 5.0908 7.4778 20 1 11.0689 7.4921 7.4143 21 1 9.5500 6.0258 6.2211 22 6 6.0186 -0.8283 0.0032 23 6 4.8092 -1.4857 0.0067 24 6 3.6228 -0.7594 0.0010 25 7 2.2922 -1.1203 0.0005 26 6 1.7936 -2.4977 -0.0001 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 1.9353 2.1236 -0.0009 31 1 4.9440 2.3817 0.0011 32 1 9.7292 2.0581 0.9505 33 1 8.8043 3.4724 0.3915 34 1 8.1554 3.9724 2.7323 35 1 9.0804 2.5578 3.2907 36 1 11.1550 3.5485 2.3606 37 1 10.2294 4.9627 1.8025 38 1 9.5804 5.4626 4.1425 39 1 10.5060 4.0486 4.7014 40 1 13.3856 7.5492 5.9530 41 1 6.9368 -1.3971 0.0044 42 1 4.7815 -2.5655 0.0077 43 1 1.6695 -2.8397 1.0274 44 1 0.8333 -2.5363 -0.5144 45 1 2.5070 -3.1421 -0.5138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842398502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:27 Heat of formation + Delta-G solvation = -54.995009 kcal Electronic energy + Delta-G solvation = -24554.154354 eV Core-core repulsion = 20922.161350 eV Total energy + Delta-G solvation = -3631.993004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.64738 -41.92778 -38.91862 -37.13847 -36.67788 -34.64996 -34.03906 -32.25941 -31.88582 -30.97732 -28.46454 -27.55333 -26.85899 -24.78570 -23.21026 -22.82389 -21.79762 -21.44096 -20.74710 -19.14509 -18.79626 -18.28658 -17.91915 -17.52970 -16.66126 -16.48738 -16.32417 -16.07094 -15.43484 -15.22510 -15.02433 -14.69751 -14.30222 -14.13486 -13.98644 -13.95550 -13.74093 -13.70155 -13.66712 -13.47968 -13.13054 -12.91143 -12.89468 -12.75761 -12.40124 -12.13972 -12.03907 -11.75972 -11.70993 -11.63977 -11.38491 -11.33970 -11.24324 -10.75226 -10.72125 -9.10969 -8.64782 -8.28775 -6.31856 -0.06027 0.22305 1.09246 1.35316 1.36858 1.49452 1.60783 1.71629 1.83544 2.36421 2.74785 3.06578 3.52172 3.59140 3.73590 3.86084 3.92697 3.97680 4.08099 4.23292 4.34608 4.37841 4.42065 4.44093 4.56287 4.59985 4.66353 4.72346 4.74119 4.75373 4.79484 4.86494 4.94909 5.07292 5.08696 5.13858 5.18413 5.21720 5.27729 5.41755 5.59228 5.65010 5.65483 5.68851 5.74283 6.09225 6.30375 6.32863 6.76259 6.79452 7.32817 8.87733 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.024818 B = 0.002011 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.963220 B =13922.822744 C =14493.392009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.092 3.908 3 C -0.237 4.237 4 C -0.119 4.119 5 C -0.097 4.097 6 C 0.035 3.965 7 O -0.290 6.290 8 C 0.459 3.541 9 O -0.525 6.525 10 C -0.101 4.101 11 C -0.102 4.102 12 C -0.094 4.094 13 C -0.018 4.018 14 C -0.530 4.530 15 H 0.038 0.962 16 C 0.003 3.997 17 N -0.950 5.950 18 Si 0.948 3.052 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.252 1.252 22 C -0.111 4.111 23 C -0.105 4.105 24 C 0.080 3.920 25 N -0.484 5.484 26 C 0.067 3.933 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.154 0.846 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.266 0.734 41 H 0.153 0.847 42 H 0.160 0.840 43 H 0.079 0.921 44 H 0.107 0.893 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.020 -23.273 -15.264 40.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.015 4.015 3 C -0.261 4.261 4 C -0.124 4.124 5 C -0.116 4.116 6 C -0.007 4.007 7 O -0.206 6.206 8 C 0.304 3.696 9 O -0.413 6.413 10 C -0.138 4.138 11 C -0.140 4.140 12 C -0.131 4.131 13 C -0.055 4.055 14 C -0.568 4.568 15 H 0.056 0.944 16 C -0.194 4.194 17 N -0.591 5.591 18 Si 0.771 3.229 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.175 1.175 22 C -0.130 4.130 23 C -0.125 4.125 24 C -0.026 4.026 25 N -0.168 5.168 26 C -0.073 4.073 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.172 0.828 31 H 0.136 0.864 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.075 0.925 41 H 0.171 0.829 42 H 0.178 0.822 43 H 0.098 0.902 44 H 0.126 0.874 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -29.313 -23.551 -14.856 40.431 hybrid contribution 0.285 0.651 0.892 1.141 sum -29.028 -22.900 -13.964 39.523 Atomic orbital electron populations 1.20628 0.84479 1.05112 1.04534 1.20965 0.95346 0.84697 1.00539 1.21708 0.89552 0.99222 1.15666 1.19277 0.93761 0.93179 1.06202 1.20669 0.90830 0.99632 1.00428 1.18477 0.83026 0.91828 1.07387 1.84672 1.34745 1.61434 1.39715 1.24903 0.87864 0.76969 0.79837 1.90681 1.53931 1.60581 1.36067 1.21547 0.92237 0.99261 1.00773 1.21405 0.98268 0.99031 0.95252 1.21327 0.96225 0.98228 0.97367 1.19580 0.94908 0.95260 0.95748 1.21543 1.08116 1.28367 0.98800 0.94407 1.26000 0.96430 0.94536 1.02416 1.70064 1.26352 1.32875 1.29839 0.85693 0.80403 0.77841 0.78933 1.19221 1.20826 1.17534 1.20941 0.99244 0.91625 1.01205 1.20116 0.87985 1.00581 1.03794 1.18498 0.85900 0.93564 1.04681 1.44110 1.02777 1.07572 1.62333 1.22286 1.02470 0.78243 1.04307 0.88760 0.89487 0.88813 0.82796 0.86414 0.84949 0.85180 0.92408 0.92173 0.91976 0.92112 0.96663 0.96707 0.92547 0.82922 0.82238 0.90235 0.87449 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 9.78 71.23 0.70 0.15 16 2 C 0.09 1.42 6.83 40.87 0.28 1.70 16 3 C -0.24 -4.97 10.95 23.51 0.26 -4.72 16 4 C -0.12 -3.09 6.37 -20.20 -0.13 -3.22 16 5 C -0.10 -2.75 9.36 22.57 0.21 -2.53 16 6 C 0.03 0.97 5.27 22.48 0.12 1.08 16 7 O -0.29 -8.00 10.03 4.05 0.04 -7.96 16 8 C 0.46 13.39 7.73 71.24 0.55 13.94 16 9 O -0.53 -19.08 15.39 21.96 0.34 -18.74 16 10 C -0.10 -2.47 5.81 29.85 0.17 -2.30 16 11 C -0.10 -3.25 4.51 30.60 0.14 -3.11 16 12 C -0.09 -3.56 5.15 30.60 0.16 -3.40 16 13 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16 14 C -0.53 -31.23 9.66 25.60 0.25 -30.99 16 15 H 0.04 2.41 7.99 -2.91 -0.02 2.38 16 16 C 0.00 0.17 5.47 84.65 0.46 0.63 16 17 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 18 Si 0.95 46.01 27.47 68.60 1.88 47.90 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 22 C -0.11 -2.47 9.95 22.39 0.22 -2.25 16 23 C -0.10 -1.97 9.94 22.34 0.22 -1.75 16 24 C 0.08 1.73 6.81 38.99 0.27 1.99 16 25 N -0.48 -7.49 3.18 -524.64 -1.67 -9.16 16 26 C 0.07 0.38 10.59 127.77 1.35 1.74 16 27 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.09 0.24 7.57 -2.39 -0.02 0.22 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.12 3.33 8.06 -2.91 -0.02 3.31 16 32 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.06 1.94 8.10 -2.39 -0.02 1.92 16 35 H 0.06 2.00 8.10 -2.38 -0.02 1.98 16 36 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.02 0.73 7.20 -2.39 -0.02 0.71 16 39 H 0.01 0.70 7.57 -2.38 -0.02 0.68 16 40 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 41 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 42 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 43 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.11 0.11 7.50 -2.39 -0.02 0.09 16 45 H 0.09 0.33 8.10 -2.39 -0.02 0.32 16 Total: -1.00 -80.03 378.66 7.15 -72.87 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.91 Total: 9.26 kcal Atomic # 6 Polarization: -39.10 SS G_CDS: 5.35 Total: -33.75 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -1.37 Total: -69.57 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: 0.38 Total: -26.70 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.88 Total: 47.90 kcal Total: -80.03 7.15 -72.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842398502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.879 kcal (2) G-P(sol) polarization free energy of solvation -80.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds