Wall clock time and date at job start Tue Mar 31 2020 12:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29442 * 117.96262 * 2 1 4 4 C 1.50706 * 117.95907 * 0.51732 * 3 2 1 5 5 C 1.50166 * 124.15004 * 180.26615 * 3 2 1 6 6 C 1.53023 * 110.09338 * 343.28283 * 5 3 2 7 7 H 1.09001 * 109.64486 * 289.32499 * 6 5 3 8 8 C 1.50694 * 109.64344 * 168.90456 * 6 5 3 9 9 O 1.21286 * 120.00303 * 240.42399 * 8 6 5 10 10 N 1.34772 * 120.00162 * 60.42104 * 8 6 5 11 11 C 1.39922 * 120.00514 * 175.55055 * 10 8 6 12 12 C 1.38965 * 120.03156 * 35.13453 * 11 10 8 13 13 C 1.38159 * 120.06525 * 179.97438 * 12 11 10 14 14 C 1.38173 * 120.13996 * 359.97438 * 13 12 11 15 15 C 1.38902 * 120.07000 * 0.02562 * 14 13 12 16 16 O 1.35755 * 120.03616 * 179.97438 * 15 14 13 17 17 C 1.34830 * 117.00199 * 185.34327 * 16 15 14 18 18 H 1.07999 * 120.00060 * 354.95297 * 17 16 15 19 19 C 1.38647 * 119.99582 * 174.94915 * 17 16 15 20 20 N 1.31556 * 120.00540 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99636 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47117 * 269.99731 * 21 19 17 23 23 H 1.48492 * 109.47378 * 29.99716 * 21 19 17 24 24 H 1.48503 * 109.47336 * 150.00352 * 21 19 17 25 25 C 1.38709 * 120.04095 * 215.36656 * 11 10 8 26 26 C 1.53397 * 108.61134 * 49.11519 * 6 5 3 27 27 C 1.50065 * 117.96212 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46408 * 275.25015 * 1 2 3 29 29 H 1.09002 * 109.47242 * 35.25071 * 1 2 3 30 30 H 1.08996 * 109.47086 * 155.25385 * 1 2 3 31 31 H 1.08997 * 109.46910 * 64.76440 * 4 3 2 32 32 H 1.09001 * 109.46376 * 184.76173 * 4 3 2 33 33 H 1.08998 * 109.47214 * 304.75829 * 4 3 2 34 34 H 1.08996 * 109.55991 * 222.98402 * 5 3 2 35 35 H 1.09000 * 109.20570 * 103.36464 * 5 3 2 36 36 H 0.97006 * 119.99963 * 355.54980 * 10 8 6 37 37 H 1.08000 * 119.96930 * 359.97438 * 12 11 10 38 38 H 1.08004 * 119.93258 * 180.02562 * 13 12 11 39 39 H 1.08001 * 119.96012 * 180.02562 * 14 13 12 40 40 H 0.96997 * 120.00257 * 180.02562 * 20 19 17 41 41 H 1.08005 * 120.07158 * 0.02562 * 25 11 10 42 42 H 1.08994 * 109.64257 * 52.35556 * 26 6 5 43 43 H 1.09004 * 109.63873 * 172.98821 * 26 6 5 44 44 H 1.08995 * 109.36245 * 42.63361 * 27 2 1 45 45 H 1.08996 * 109.24630 * 282.98010 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 1.2696 2.3915 0.0120 5 6 3.6069 1.3052 -0.0058 6 6 4.2796 -0.0074 0.4020 7 1 4.1094 -0.1923 1.4626 8 6 5.7600 0.0774 0.1337 9 8 6.2825 -0.7009 -0.6359 10 7 6.5036 1.0181 0.7490 11 6 7.8915 1.0388 0.5728 12 6 8.4424 0.6820 -0.6521 13 6 9.8127 0.7027 -0.8271 14 6 10.6395 1.0784 0.2143 15 6 10.0950 1.4360 1.4410 16 8 10.9080 1.8045 2.4639 17 6 10.3246 2.0322 3.6580 18 1 9.2490 1.9988 3.7486 19 6 11.1058 2.3091 4.7695 20 7 12.4161 2.3502 4.6590 21 14 10.2977 2.6238 6.4240 22 1 10.0160 4.0746 6.5693 23 1 9.0258 1.8620 6.5066 24 1 11.2090 2.1853 7.5114 25 6 8.7192 1.4107 1.6218 26 6 3.6702 -1.1471 -0.4243 27 6 2.2107 -1.3255 -0.0006 28 1 -0.3632 0.0940 1.0234 29 1 -0.3634 0.8392 -0.5931 30 1 -0.3633 -0.9333 -0.4302 31 1 0.7106 2.4430 0.9463 32 1 1.9137 3.2666 -0.0747 33 1 0.5740 2.3678 -0.8268 34 1 3.8916 2.0899 0.6950 35 1 3.9336 1.5825 -1.0080 36 1 6.0765 1.6809 1.3141 37 1 7.7988 0.3884 -1.4682 38 1 10.2386 0.4255 -1.7801 39 1 11.7103 1.0939 0.0742 40 1 12.9626 2.5435 5.4367 41 1 8.2938 1.6843 2.5761 42 1 3.7161 -0.8965 -1.4841 43 1 4.2210 -2.0693 -0.2386 44 1 1.7119 -1.9990 -0.6974 45 1 2.1750 -1.7516 1.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843530797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:50 Heat of formation + Delta-G solvation = -40.022000 kcal Electronic energy + Delta-G solvation = -25549.682541 eV Core-core repulsion = 21918.338815 eV Total energy + Delta-G solvation = -3631.343726 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.62965 -39.18957 -38.34188 -36.41612 -34.27289 -33.75881 -32.26424 -32.02984 -29.42949 -28.68510 -27.54392 -26.66180 -25.30807 -23.54010 -22.91828 -21.80428 -21.14033 -19.80827 -17.97240 -17.79150 -17.38323 -16.68516 -15.73860 -15.31471 -15.11436 -15.03214 -14.84890 -14.61347 -14.23077 -14.01727 -13.96154 -13.74999 -13.50596 -13.15312 -12.90980 -12.67746 -12.40538 -12.36401 -12.24354 -12.03731 -11.97927 -11.73342 -11.52184 -11.25624 -11.06866 -10.97377 -10.95221 -10.79325 -10.52596 -10.46592 -9.78820 -9.55500 -9.32197 -8.81272 -8.78602 -7.73619 -7.16242 -6.45207 -4.05086 1.92021 1.97646 2.38391 2.83375 3.10861 3.12101 3.16579 3.26439 3.95291 4.29956 4.34410 4.58688 4.62482 4.74369 4.90702 4.96390 5.08341 5.12998 5.17147 5.20574 5.25884 5.29240 5.30102 5.41152 5.52975 5.63286 5.65864 5.68408 5.69356 5.74263 5.76484 5.97453 6.00923 6.06748 6.11599 6.25827 6.29274 6.40567 6.64558 6.79833 6.97864 7.00170 7.12716 7.31872 7.42470 7.70897 7.81948 7.99016 8.32742 9.00188 9.70678 10.72911 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.002969 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.962175 B = 9429.707623 C =10677.855478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.130 4.130 3 C -0.128 4.128 4 C -0.119 4.119 5 C -0.072 4.072 6 C -0.106 4.106 7 H 0.100 0.900 8 C 0.515 3.485 9 O -0.519 6.519 10 N -0.669 5.669 11 C 0.177 3.823 12 C -0.205 4.205 13 C -0.065 4.065 14 C -0.199 4.199 15 C 0.167 3.833 16 O -0.177 6.177 17 C -0.392 4.392 18 H 0.090 0.910 19 C 0.040 3.960 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.273 1.273 23 H -0.268 1.268 24 H -0.277 1.277 25 C -0.256 4.256 26 C -0.098 4.098 27 C -0.081 4.081 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.406 0.594 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.270 0.730 41 H 0.129 0.871 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.505 -2.105 -7.618 23.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.130 4.130 3 C -0.128 4.128 4 C -0.176 4.176 5 C -0.109 4.109 6 C -0.127 4.127 7 H 0.118 0.882 8 C 0.302 3.698 9 O -0.394 6.394 10 N -0.313 5.313 11 C 0.084 3.916 12 C -0.226 4.226 13 C -0.084 4.084 14 C -0.219 4.219 15 C 0.113 3.887 16 O -0.080 6.080 17 C -0.469 4.469 18 H 0.107 0.893 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.193 1.193 24 H -0.202 1.202 25 C -0.277 4.277 26 C -0.136 4.136 27 C -0.118 4.118 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.241 0.759 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.080 0.920 41 H 0.147 0.853 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.735 -2.606 -7.985 23.301 hybrid contribution -0.633 0.535 1.304 1.545 sum -22.368 -2.071 -6.682 23.436 Atomic orbital electron populations 1.20997 0.92683 1.02334 1.01899 1.20709 0.95618 0.94486 1.02177 1.20582 0.94677 0.94798 1.02743 1.20944 0.99221 0.95611 1.01800 1.20381 0.92030 0.95930 1.02547 1.21415 0.90778 0.97831 1.02668 0.88166 1.20669 0.88818 0.80035 0.80259 1.90699 1.73301 1.41049 1.34350 1.43522 1.06166 1.31928 1.49684 1.17446 0.81176 0.99405 0.93585 1.20682 0.95102 1.10302 0.96470 1.20563 0.92775 0.97619 0.97459 1.20264 0.99798 1.09603 0.92249 1.19069 0.88893 0.91376 0.89377 1.84008 1.33568 1.73807 1.16625 1.21268 0.92631 1.49774 0.83193 0.89258 1.25269 0.95416 0.96775 0.99007 1.70033 1.03728 1.45049 1.30947 0.85734 0.78735 0.78851 0.80216 1.19897 1.19288 1.20237 1.20832 0.93302 1.14693 0.98920 1.21419 0.94419 0.97878 0.99864 1.20428 0.94792 0.94699 1.01901 0.91676 0.91562 0.92263 0.91665 0.92155 0.91576 0.90396 0.90267 0.75938 0.85892 0.86645 0.86402 0.92022 0.85292 0.91029 0.90456 0.90742 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.19 36.01 0.33 -0.47 16 2 C -0.13 -1.06 5.84 -100.94 -0.59 -1.65 16 3 C -0.13 -1.08 5.84 -100.89 -0.59 -1.66 16 4 C -0.12 -0.82 8.69 36.01 0.31 -0.50 16 5 C -0.07 -0.65 4.84 -28.13 -0.14 -0.78 16 6 C -0.11 -1.11 2.58 -91.56 -0.24 -1.35 16 7 H 0.10 0.96 8.13 -51.93 -0.42 0.54 16 8 C 0.52 7.52 6.98 -10.99 -0.08 7.45 16 9 O -0.52 -9.41 13.34 5.55 0.07 -9.34 16 10 N -0.67 -10.05 5.26 -9.88 -0.05 -10.10 16 11 C 0.18 3.40 6.29 -83.72 -0.53 2.87 16 12 C -0.20 -3.98 8.70 -39.34 -0.34 -4.32 16 13 C -0.07 -1.25 10.03 -39.63 -0.40 -1.65 16 14 C -0.20 -4.33 9.99 -39.36 -0.39 -4.72 16 15 C 0.17 4.07 6.65 -39.14 -0.26 3.81 16 16 O -0.18 -5.03 9.76 0.03 0.00 -5.03 16 17 C -0.39 -10.88 9.49 30.88 0.29 -10.58 16 18 H 0.09 2.27 5.20 -52.49 -0.27 2.00 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.24 13.67 55.48 0.76 -24.48 16 21 Si 0.94 20.30 29.55 -169.99 -5.02 15.28 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 C -0.26 -5.56 9.08 -39.21 -0.36 -5.91 16 26 C -0.10 -1.01 4.69 -26.51 -0.12 -1.13 16 27 C -0.08 -0.67 5.77 -28.18 -0.16 -0.83 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.39 6.06 -51.93 -0.31 0.08 16 30 H 0.06 0.35 7.98 -51.93 -0.41 -0.07 16 31 H 0.06 0.41 8.07 -51.93 -0.42 -0.01 16 32 H 0.06 0.40 7.93 -51.93 -0.41 -0.01 16 33 H 0.07 0.41 6.76 -51.93 -0.35 0.06 16 34 H 0.08 0.61 7.83 -51.93 -0.41 0.21 16 35 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.41 4.83 8.39 -40.82 -0.34 4.49 16 37 H 0.12 2.35 6.23 -52.49 -0.33 2.02 16 38 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 39 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 40 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.13 2.74 5.63 -52.48 -0.30 2.44 16 42 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 43 H 0.08 0.87 7.90 -51.93 -0.41 0.46 16 44 H 0.07 0.54 8.07 -51.93 -0.42 0.13 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -32.52 364.14 -8.58 -41.10 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.48 Total: 7.54 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -3.35 Total: -20.46 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.71 Total: -34.58 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.07 Total: -14.37 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.52 -8.58 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843530797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.078 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds