Wall clock time and date at job start Tue Mar 31 2020 12:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29442 * 117.96262 * 2 1 4 4 C 1.50706 * 117.95907 * 0.51732 * 3 2 1 5 5 C 1.50166 * 124.15004 * 180.26615 * 3 2 1 6 6 C 1.53023 * 110.09338 * 343.28283 * 5 3 2 7 7 H 1.09001 * 109.64486 * 289.32499 * 6 5 3 8 8 C 1.50694 * 109.64344 * 168.90456 * 6 5 3 9 9 O 1.21286 * 120.00303 * 240.42399 * 8 6 5 10 10 N 1.34772 * 120.00162 * 60.42104 * 8 6 5 11 11 C 1.39922 * 120.00514 * 175.55055 * 10 8 6 12 12 C 1.38965 * 120.03156 * 35.13453 * 11 10 8 13 13 C 1.38159 * 120.06525 * 179.97438 * 12 11 10 14 14 C 1.38173 * 120.13996 * 359.97438 * 13 12 11 15 15 C 1.38902 * 120.07000 * 0.02562 * 14 13 12 16 16 O 1.35755 * 120.03616 * 179.97438 * 15 14 13 17 17 C 1.34830 * 117.00199 * 185.34327 * 16 15 14 18 18 H 1.07999 * 120.00060 * 354.95297 * 17 16 15 19 19 C 1.38647 * 119.99582 * 174.94915 * 17 16 15 20 20 N 1.31556 * 120.00540 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99636 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47117 * 269.99731 * 21 19 17 23 23 H 1.48492 * 109.47378 * 29.99716 * 21 19 17 24 24 H 1.48503 * 109.47336 * 150.00352 * 21 19 17 25 25 C 1.38709 * 120.04095 * 215.36656 * 11 10 8 26 26 C 1.53397 * 108.61134 * 49.11519 * 6 5 3 27 27 C 1.50065 * 117.96212 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46408 * 275.25015 * 1 2 3 29 29 H 1.09002 * 109.47242 * 35.25071 * 1 2 3 30 30 H 1.08996 * 109.47086 * 155.25385 * 1 2 3 31 31 H 1.08997 * 109.46910 * 64.76440 * 4 3 2 32 32 H 1.09001 * 109.46376 * 184.76173 * 4 3 2 33 33 H 1.08998 * 109.47214 * 304.75829 * 4 3 2 34 34 H 1.08996 * 109.55991 * 222.98402 * 5 3 2 35 35 H 1.09000 * 109.20570 * 103.36464 * 5 3 2 36 36 H 0.97006 * 119.99963 * 355.54980 * 10 8 6 37 37 H 1.08000 * 119.96930 * 359.97438 * 12 11 10 38 38 H 1.08004 * 119.93258 * 180.02562 * 13 12 11 39 39 H 1.08001 * 119.96012 * 180.02562 * 14 13 12 40 40 H 0.96997 * 120.00257 * 180.02562 * 20 19 17 41 41 H 1.08005 * 120.07158 * 0.02562 * 25 11 10 42 42 H 1.08994 * 109.64257 * 52.35556 * 26 6 5 43 43 H 1.09004 * 109.63873 * 172.98821 * 26 6 5 44 44 H 1.08995 * 109.36245 * 42.63361 * 27 2 1 45 45 H 1.08996 * 109.24630 * 282.98010 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 1.2696 2.3915 0.0120 5 6 3.6069 1.3052 -0.0058 6 6 4.2796 -0.0074 0.4020 7 1 4.1094 -0.1923 1.4626 8 6 5.7600 0.0774 0.1337 9 8 6.2825 -0.7009 -0.6359 10 7 6.5036 1.0181 0.7490 11 6 7.8915 1.0388 0.5728 12 6 8.4424 0.6820 -0.6521 13 6 9.8127 0.7027 -0.8271 14 6 10.6395 1.0784 0.2143 15 6 10.0950 1.4360 1.4410 16 8 10.9080 1.8045 2.4639 17 6 10.3246 2.0322 3.6580 18 1 9.2490 1.9988 3.7486 19 6 11.1058 2.3091 4.7695 20 7 12.4161 2.3502 4.6590 21 14 10.2977 2.6238 6.4240 22 1 10.0160 4.0746 6.5693 23 1 9.0258 1.8620 6.5066 24 1 11.2090 2.1853 7.5114 25 6 8.7192 1.4107 1.6218 26 6 3.6702 -1.1471 -0.4243 27 6 2.2107 -1.3255 -0.0006 28 1 -0.3632 0.0940 1.0234 29 1 -0.3634 0.8392 -0.5931 30 1 -0.3633 -0.9333 -0.4302 31 1 0.7106 2.4430 0.9463 32 1 1.9137 3.2666 -0.0747 33 1 0.5740 2.3678 -0.8268 34 1 3.8916 2.0899 0.6950 35 1 3.9336 1.5825 -1.0080 36 1 6.0765 1.6809 1.3141 37 1 7.7988 0.3884 -1.4682 38 1 10.2386 0.4255 -1.7801 39 1 11.7103 1.0939 0.0742 40 1 12.9626 2.5435 5.4367 41 1 8.2938 1.6843 2.5761 42 1 3.7161 -0.8965 -1.4841 43 1 4.2210 -2.0693 -0.2386 44 1 1.7119 -1.9990 -0.6974 45 1 2.1750 -1.7516 1.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843530797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:49 Heat of formation + Delta-G solvation = -58.473884 kcal Electronic energy + Delta-G solvation = -25550.482675 eV Core-core repulsion = 21918.338815 eV Total energy + Delta-G solvation = -3632.143859 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.84192 -40.62457 -39.52300 -38.07234 -35.70975 -34.56586 -34.21249 -32.75345 -31.00032 -30.27991 -28.31799 -27.44241 -27.18782 -24.46904 -23.84736 -23.50502 -22.39555 -21.10770 -19.76517 -19.31548 -18.38288 -17.81756 -17.25410 -16.76930 -16.31871 -16.19129 -15.90164 -15.69627 -15.64158 -15.46707 -15.21469 -14.77071 -14.62890 -14.60125 -14.14079 -13.89795 -13.57016 -13.22110 -13.17511 -13.06370 -12.94269 -12.77996 -12.65455 -12.60290 -12.51214 -12.47306 -12.12493 -11.89839 -11.70689 -11.44415 -11.30575 -11.17595 -10.77513 -10.64561 -9.38678 -9.36690 -8.90537 -8.46525 -6.15537 0.38132 0.68428 1.31786 1.35977 1.44822 1.53507 1.56718 2.02143 2.18093 2.82774 3.14730 3.42408 3.49743 3.63867 3.79784 4.05401 4.10285 4.14336 4.30814 4.32381 4.38748 4.44540 4.54205 4.54998 4.62761 4.68598 4.73505 4.76182 4.82857 4.92861 4.99037 5.02298 5.04946 5.08435 5.11044 5.20201 5.21878 5.26136 5.31962 5.39255 5.47284 5.65373 5.66424 5.81380 6.01413 6.16315 6.19693 6.43661 6.97738 7.09358 7.77042 8.76533 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.002969 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.962175 B = 9429.707623 C =10677.855478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.135 4.135 3 C -0.138 4.138 4 C -0.117 4.117 5 C -0.069 4.069 6 C -0.095 4.095 7 H 0.116 0.884 8 C 0.516 3.484 9 O -0.555 6.555 10 N -0.661 5.661 11 C 0.184 3.816 12 C -0.200 4.200 13 C -0.054 4.054 14 C -0.213 4.213 15 C 0.133 3.867 16 O -0.226 6.226 17 C -0.414 4.414 18 H 0.104 0.896 19 C -0.022 4.022 20 N -0.920 5.920 21 Si 1.018 2.982 22 H -0.261 1.261 23 H -0.252 1.252 24 H -0.274 1.274 25 C -0.259 4.259 26 C -0.097 4.097 27 C -0.078 4.078 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.422 0.578 37 H 0.133 0.867 38 H 0.153 0.847 39 H 0.119 0.881 40 H 0.273 0.727 41 H 0.130 0.870 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.923 -2.130 -7.638 27.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.135 4.135 3 C -0.138 4.138 4 C -0.174 4.174 5 C -0.106 4.106 6 C -0.116 4.116 7 H 0.134 0.866 8 C 0.305 3.695 9 O -0.432 6.432 10 N -0.306 5.306 11 C 0.089 3.911 12 C -0.221 4.221 13 C -0.072 4.072 14 C -0.233 4.233 15 C 0.082 3.918 16 O -0.132 6.132 17 C -0.490 4.490 18 H 0.121 0.879 19 C -0.220 4.220 20 N -0.558 5.558 21 Si 0.838 3.162 22 H -0.186 1.186 23 H -0.175 1.175 24 H -0.199 1.199 25 C -0.280 4.280 26 C -0.135 4.135 27 C -0.115 4.115 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.260 0.740 37 H 0.151 0.849 38 H 0.171 0.829 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.148 0.852 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.216 -2.627 -8.040 26.597 hybrid contribution 0.316 0.434 1.027 1.158 sum -24.900 -2.193 -7.013 25.962 Atomic orbital electron populations 1.21011 0.91369 1.02940 1.02473 1.20887 0.96668 0.94192 1.01790 1.20668 0.94234 0.95639 1.03292 1.20946 0.99175 0.94825 1.02436 1.20381 0.92639 0.95173 1.02449 1.21422 0.87492 0.99038 1.03638 0.86579 1.21435 0.90248 0.78793 0.79009 1.90679 1.74287 1.42282 1.35916 1.43528 1.04461 1.32630 1.50011 1.17490 0.83074 0.97758 0.92746 1.20988 0.95462 1.08962 0.96689 1.20943 0.92494 0.95679 0.98100 1.20489 1.00446 1.10162 0.92219 1.19594 0.90052 0.92635 0.89517 1.83979 1.35322 1.76244 1.17687 1.21815 0.93551 1.50026 0.83586 0.87920 1.26595 0.95992 0.96162 1.03230 1.70185 1.05700 1.47543 1.32391 0.84592 0.78088 0.79349 0.74220 1.18599 1.17536 1.19852 1.20861 0.92636 1.14843 0.99690 1.21392 0.95804 0.97051 0.99219 1.20418 0.93219 0.95284 1.02550 0.91045 0.90970 0.91719 0.90961 0.92040 0.90954 0.89006 0.91086 0.73988 0.84919 0.82945 0.86306 0.91828 0.85209 0.92135 0.91796 0.89759 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.19 71.24 0.65 -0.57 16 2 C -0.14 -1.85 5.84 -15.10 -0.09 -1.94 16 3 C -0.14 -1.96 5.84 -15.06 -0.09 -2.05 16 4 C -0.12 -1.29 8.69 71.24 0.62 -0.67 16 5 C -0.07 -1.08 4.84 29.69 0.14 -0.94 16 6 C -0.09 -1.80 2.58 -11.40 -0.03 -1.83 16 7 H 0.12 1.90 8.13 -2.39 -0.02 1.88 16 8 C 0.52 14.19 6.98 87.66 0.61 14.80 16 9 O -0.55 -19.43 13.34 -3.05 -0.04 -19.47 16 10 N -0.66 -18.65 5.26 -303.57 -1.60 -20.25 16 11 C 0.18 6.86 6.29 38.14 0.24 7.10 16 12 C -0.20 -7.47 8.70 22.43 0.19 -7.27 16 13 C -0.05 -1.98 10.03 22.24 0.22 -1.76 16 14 C -0.21 -9.37 9.99 22.41 0.22 -9.15 16 15 C 0.13 6.69 6.65 22.56 0.15 6.84 16 16 O -0.23 -13.51 9.76 -22.80 -0.22 -13.73 16 17 C -0.41 -23.68 9.49 67.92 0.64 -23.03 16 18 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 19 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 20 N -0.92 -56.08 13.67 21.61 0.30 -55.78 16 21 Si 1.02 41.89 29.55 68.60 2.03 43.92 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 23 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 25 C -0.26 -11.27 9.08 22.51 0.20 -11.06 16 26 C -0.10 -1.84 4.69 30.74 0.14 -1.69 16 27 C -0.08 -1.10 5.77 29.66 0.17 -0.93 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.65 6.06 -2.39 -0.01 0.63 16 30 H 0.06 0.58 7.98 -2.39 -0.02 0.56 16 31 H 0.07 0.70 8.07 -2.39 -0.02 0.68 16 32 H 0.06 0.65 7.93 -2.39 -0.02 0.63 16 33 H 0.07 0.70 6.76 -2.39 -0.02 0.69 16 34 H 0.09 1.17 7.83 -2.39 -0.02 1.15 16 35 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 36 H 0.42 9.10 8.39 -92.70 -0.78 8.32 16 37 H 0.13 4.79 6.23 -2.91 -0.02 4.77 16 38 H 0.15 4.44 8.06 -2.91 -0.02 4.42 16 39 H 0.12 5.08 8.06 -2.91 -0.02 5.05 16 40 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 41 H 0.13 5.53 5.63 -2.91 -0.02 5.51 16 42 H 0.06 1.27 8.13 -2.39 -0.02 1.26 16 43 H 0.06 1.38 7.90 -2.38 -0.02 1.36 16 44 H 0.08 1.04 8.07 -2.39 -0.02 1.02 16 45 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -73.37 364.14 5.18 -68.18 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: 0.23 Total: 32.08 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 4.49 Total: -34.94 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -1.30 Total: -76.03 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.26 Total: -33.21 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -73.37 5.18 -68.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843530797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.711 kcal (2) G-P(sol) polarization free energy of solvation -73.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds