Wall clock time and date at job start Tue Mar 31 2020 11:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 110.66327 * 2 1 4 4 C 1.54708 * 110.74546 * 236.59709 * 2 1 3 5 5 C 1.51673 * 101.89278 * 267.04727 * 4 2 1 6 6 C 1.37312 * 132.06333 * 164.60964 * 5 4 2 7 7 C 1.39810 * 119.85479 * 180.76133 * 6 5 4 8 8 C 1.47601 * 120.26811 * 179.65023 * 7 6 5 9 9 O 1.21591 * 120.00021 * 4.87514 * 8 7 6 10 10 N 1.34775 * 120.00528 * 184.87544 * 8 7 6 11 11 C 1.46498 * 120.00206 * 185.07567 * 10 8 7 12 12 C 1.53000 * 109.47143 * 184.99833 * 11 10 8 13 13 C 1.50700 * 115.55339 * 54.23539 * 12 11 10 14 14 H 1.07998 * 119.99959 * 215.59587 * 13 12 11 15 15 C 1.37868 * 119.99611 * 35.31916 * 13 12 11 16 16 N 1.31517 * 120.00313 * 355.78827 * 15 13 12 17 17 Si 1.86806 * 120.00060 * 175.78219 * 15 13 12 18 18 H 1.48504 * 109.46861 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47275 * 120.00260 * 17 15 13 20 20 H 1.48498 * 109.47010 * 240.00505 * 17 15 13 21 21 C 1.52999 * 117.49910 * 199.91522 * 12 11 10 22 22 C 1.53009 * 117.49336 * 268.57093 * 12 11 10 23 23 C 1.39753 * 119.46752 * 359.38060 * 7 6 5 24 24 C 1.37465 * 120.20232 * 0.09677 * 23 7 6 25 25 C 1.39180 * 106.99786 * 344.47344 * 5 4 2 26 26 O 1.35996 * 111.17905 * 359.09022 * 25 5 4 27 27 H 1.08994 * 109.47270 * 298.25826 * 1 2 3 28 28 H 1.09004 * 109.46604 * 58.25758 * 1 2 3 29 29 H 1.09001 * 109.47352 * 178.24834 * 1 2 3 30 30 H 1.09001 * 109.47271 * 181.74340 * 3 2 1 31 31 H 1.09000 * 109.47315 * 301.74915 * 3 2 1 32 32 H 1.09001 * 109.47036 * 61.74453 * 3 2 1 33 33 H 1.09003 * 110.93789 * 25.19619 * 4 2 1 34 34 H 1.08994 * 110.94479 * 148.89460 * 4 2 1 35 35 H 1.07994 * 120.07519 * 0.48111 * 6 5 4 36 36 H 0.96999 * 119.99726 * 5.07594 * 10 8 7 37 37 H 1.08998 * 109.47294 * 64.99680 * 11 10 8 38 38 H 1.09000 * 109.47290 * 304.99205 * 11 10 8 39 39 H 0.97005 * 119.99975 * 184.99946 * 16 15 13 40 40 H 1.09004 * 117.49590 * 214.99894 * 21 12 11 41 41 H 1.09000 * 117.49714 * 0.02562 * 21 12 11 42 42 H 1.08995 * 117.50368 * 359.97438 * 22 12 11 43 43 H 1.08999 * 117.49425 * 144.97593 * 22 12 11 44 44 H 1.08002 * 119.90273 * 180.12206 * 23 7 6 45 45 H 1.07999 * 119.78536 * 180.11779 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0699 1.4315 0.0000 4 6 2.0780 -0.7965 -1.2078 5 6 2.2602 -2.1799 -0.6132 6 6 2.4490 -3.4115 -1.1901 7 6 2.5745 -4.5462 -0.3830 8 6 2.7699 -5.8757 -0.9937 9 8 2.9111 -5.9771 -2.1971 10 7 2.7919 -6.9773 -0.2175 11 6 3.0963 -8.2832 -0.8076 12 6 2.9346 -9.3728 0.2543 13 6 1.6016 -9.4034 0.9565 14 1 1.5483 -9.6666 2.0026 15 6 0.4509 -9.0899 0.2650 16 7 0.5240 -8.6841 -0.9839 17 14 -1.2124 -9.2415 1.1018 18 1 -1.0233 -9.7144 2.4968 19 1 -1.8824 -7.9163 1.1154 20 1 -2.0535 -10.2139 0.3588 21 6 3.6328 -10.7112 0.0051 22 6 4.1719 -9.7530 1.0702 23 6 2.5191 -4.4108 1.0068 24 6 2.3406 -3.1716 1.5744 25 6 2.2101 -2.0379 0.7704 26 8 2.0390 -0.7361 1.1249 27 1 -0.3633 0.4865 0.9051 28 1 -0.3633 0.5407 -0.8740 29 1 -0.3634 -1.0272 -0.0314 30 1 3.1592 1.4091 -0.0313 31 1 1.6921 1.9624 -0.8739 32 1 1.7429 1.9432 0.9052 33 1 1.3545 -0.8148 -2.0229 34 1 3.0311 -0.3881 -1.5437 35 1 2.4958 -3.5042 -2.2650 36 1 2.6062 -6.9054 0.7318 37 1 4.1218 -8.2850 -1.1768 38 1 2.4123 -8.4769 -1.6339 39 1 -0.2774 -8.3945 -1.4475 40 1 3.1279 -11.6139 0.3490 41 1 4.2076 -10.8153 -0.9152 42 1 5.1010 -9.2273 0.8502 43 1 4.0216 -10.0250 2.1149 44 1 2.6172 -5.2824 1.6370 45 1 2.3007 -3.0745 2.6492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843588831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:30 Heat of formation + Delta-G solvation = -21.272553 kcal Electronic energy + Delta-G solvation = -26193.410578 eV Core-core repulsion = 22562.879889 eV Total energy + Delta-G solvation = -3630.530689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.40589 -39.06482 -37.18044 -36.41373 -34.01037 -33.12553 -32.19930 -31.51344 -30.12890 -27.76662 -26.99450 -25.87995 -25.24479 -22.92556 -21.79409 -21.25587 -20.87139 -19.47018 -19.24800 -17.39462 -17.14304 -16.35519 -15.92597 -15.58155 -14.99472 -14.82763 -14.30017 -14.24003 -14.08231 -13.89941 -13.60120 -13.29720 -13.07816 -12.99896 -12.65704 -12.61497 -12.42194 -12.27701 -12.12238 -11.93503 -11.69318 -11.45229 -11.22255 -11.09052 -10.83318 -10.67885 -10.62012 -10.51625 -10.24332 -9.73106 -9.12658 -8.93697 -8.85165 -8.84731 -8.29293 -8.13133 -7.75254 -5.98604 -4.19670 1.10803 1.42190 3.02436 3.21181 3.31513 3.33506 3.37775 4.03047 4.23714 4.27788 4.31511 4.40093 4.54419 4.78358 4.87307 4.96015 5.08866 5.21261 5.30184 5.34651 5.40320 5.44773 5.46581 5.49881 5.53944 5.67488 5.75148 5.78794 5.91154 6.01793 6.10503 6.29533 6.34936 6.40999 6.52643 6.55731 6.61167 6.61958 6.71617 6.89692 7.10805 7.18400 7.25518 7.58698 7.67568 7.98558 8.30795 8.59916 8.83055 9.21389 9.44342 10.89923 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017384 B = 0.003467 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.327544 B = 8074.924160 C = 8722.967138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.100 3.900 3 C -0.140 4.140 4 C -0.098 4.098 5 C -0.187 4.187 6 C -0.016 4.016 7 C -0.145 4.145 8 C 0.551 3.449 9 O -0.559 6.559 10 N -0.674 5.674 11 C 0.164 3.836 12 C 0.036 3.964 13 C -0.499 4.499 14 H 0.061 0.939 15 C 0.075 3.925 16 N -0.864 5.864 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.199 4.199 22 C -0.213 4.213 23 C -0.051 4.051 24 C -0.146 4.146 25 C 0.120 3.880 26 O -0.297 6.297 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.396 0.604 37 H 0.018 0.982 38 H 0.118 0.882 39 H 0.262 0.738 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.139 0.861 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.910 17.480 2.372 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.063 3.937 3 C -0.197 4.197 4 C -0.135 4.135 5 C -0.188 4.188 6 C -0.035 4.035 7 C -0.148 4.148 8 C 0.337 3.663 9 O -0.441 6.441 10 N -0.321 5.321 11 C 0.041 3.959 12 C 0.035 3.965 13 C -0.536 4.536 14 H 0.080 0.920 15 C -0.130 4.130 16 N -0.500 5.500 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.237 4.237 22 C -0.250 4.250 23 C -0.070 4.070 24 C -0.165 4.165 25 C 0.074 3.926 26 O -0.211 6.211 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.154 0.846 36 H 0.231 0.769 37 H 0.036 0.964 38 H 0.136 0.864 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.157 0.843 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.926 17.488 1.554 17.662 hybrid contribution -1.052 -0.205 0.844 1.365 sum 0.874 17.282 2.398 17.470 Atomic orbital electron populations 1.22204 0.93381 1.03468 1.03046 1.22753 0.94395 0.92820 0.83779 1.21829 1.01982 0.92754 1.03169 1.21851 1.02559 0.91076 0.97995 1.20605 1.09119 0.95227 0.93818 1.20337 0.93450 0.89099 1.00592 1.20089 1.06758 0.94539 0.93455 1.17871 0.78057 0.83825 0.86587 1.90695 1.52096 1.87013 1.14256 1.45522 1.67835 1.06986 1.11729 1.21097 0.96955 0.79774 0.98058 1.19250 0.90868 0.91417 0.94970 1.20533 0.88990 1.48032 0.96074 0.92043 1.25001 0.99039 0.94317 0.94617 1.69867 1.28699 1.41558 1.09866 0.86537 0.84025 0.77878 0.79629 1.19719 1.20950 1.20858 1.22940 1.05883 0.96482 0.98427 1.22960 0.99114 1.06722 0.96200 1.21147 0.94912 0.96778 0.94156 1.20142 1.07439 0.89139 0.99755 1.19735 0.95258 0.84722 0.92870 1.86814 1.79762 1.16566 1.37999 0.91351 0.90676 0.91568 0.91408 0.90329 0.91293 0.88999 0.89140 0.84650 0.76899 0.96351 0.86404 0.92683 0.90222 0.91457 0.91334 0.90618 0.84330 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 8.84 37.16 0.33 -1.13 16 2 C 0.10 1.00 1.26 -89.72 -0.11 0.88 16 3 C -0.14 -1.01 8.96 37.16 0.33 -0.68 16 4 C -0.10 -1.02 6.19 -26.50 -0.16 -1.19 16 5 C -0.19 -2.62 6.25 -104.13 -0.65 -3.28 16 6 C -0.02 -0.26 9.58 -39.33 -0.38 -0.63 16 7 C -0.15 -2.59 5.88 -104.92 -0.62 -3.21 16 8 C 0.55 11.90 7.75 -12.44 -0.10 11.80 16 9 O -0.56 -13.84 16.35 5.29 0.09 -13.75 16 10 N -0.67 -14.60 4.96 -61.33 -0.30 -14.90 16 11 C 0.16 3.89 4.62 -4.04 -0.02 3.87 16 12 C 0.04 0.83 2.04 -155.66 -0.32 0.52 16 13 C -0.50 -12.58 8.43 -34.44 -0.29 -12.87 16 14 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 15 C 0.07 1.92 5.31 -17.82 -0.09 1.82 16 16 N -0.86 -23.13 10.11 55.43 0.56 -22.57 16 17 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.20 -4.31 9.96 -26.69 -0.27 -4.58 16 22 C -0.21 -4.37 9.92 -26.69 -0.26 -4.63 16 23 C -0.05 -0.79 9.49 -39.30 -0.37 -1.16 16 24 C -0.15 -2.05 10.05 -39.36 -0.40 -2.44 16 25 C 0.12 1.71 6.95 -38.73 -0.27 1.44 16 26 O -0.30 -3.88 10.51 -19.73 -0.21 -4.09 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 30 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.84 7.92 -51.93 -0.41 0.43 16 34 H 0.09 0.84 7.91 -51.93 -0.41 0.43 16 35 H 0.14 2.20 7.67 -52.49 -0.40 1.80 16 36 H 0.40 8.01 6.22 -40.82 -0.25 7.76 16 37 H 0.02 0.43 8.09 -51.93 -0.42 0.01 16 38 H 0.12 3.21 5.89 -51.93 -0.31 2.90 16 39 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 40 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 44 H 0.14 1.95 6.48 -52.49 -0.34 1.61 16 45 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 370.03 15.07 5.58 5.58 Total: -1.00 -29.56 370.03 -9.69 -39.25 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -6.74 Total: 10.81 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -3.65 Total: -15.47 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.26 Total: -37.48 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.12 Total: -17.84 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.56 -9.69 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843588831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.978 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds