Wall clock time and date at job start Tue Mar 31 2020 11:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 110.66327 * 2 1 4 4 C 1.54708 * 110.74546 * 236.59709 * 2 1 3 5 5 C 1.51673 * 101.89278 * 267.04727 * 4 2 1 6 6 C 1.37312 * 132.06333 * 164.60964 * 5 4 2 7 7 C 1.39810 * 119.85479 * 180.76133 * 6 5 4 8 8 C 1.47601 * 120.26811 * 179.65023 * 7 6 5 9 9 O 1.21591 * 120.00021 * 4.87514 * 8 7 6 10 10 N 1.34775 * 120.00528 * 184.87544 * 8 7 6 11 11 C 1.46498 * 120.00206 * 185.07567 * 10 8 7 12 12 C 1.53000 * 109.47143 * 184.99833 * 11 10 8 13 13 C 1.50700 * 115.55339 * 54.23539 * 12 11 10 14 14 H 1.07998 * 119.99959 * 215.59587 * 13 12 11 15 15 C 1.37868 * 119.99611 * 35.31916 * 13 12 11 16 16 N 1.31517 * 120.00313 * 355.78827 * 15 13 12 17 17 Si 1.86806 * 120.00060 * 175.78219 * 15 13 12 18 18 H 1.48504 * 109.46861 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47275 * 120.00260 * 17 15 13 20 20 H 1.48498 * 109.47010 * 240.00505 * 17 15 13 21 21 C 1.52999 * 117.49910 * 199.91522 * 12 11 10 22 22 C 1.53009 * 117.49336 * 268.57093 * 12 11 10 23 23 C 1.39753 * 119.46752 * 359.38060 * 7 6 5 24 24 C 1.37465 * 120.20232 * 0.09677 * 23 7 6 25 25 C 1.39180 * 106.99786 * 344.47344 * 5 4 2 26 26 O 1.35996 * 111.17905 * 359.09022 * 25 5 4 27 27 H 1.08994 * 109.47270 * 298.25826 * 1 2 3 28 28 H 1.09004 * 109.46604 * 58.25758 * 1 2 3 29 29 H 1.09001 * 109.47352 * 178.24834 * 1 2 3 30 30 H 1.09001 * 109.47271 * 181.74340 * 3 2 1 31 31 H 1.09000 * 109.47315 * 301.74915 * 3 2 1 32 32 H 1.09001 * 109.47036 * 61.74453 * 3 2 1 33 33 H 1.09003 * 110.93789 * 25.19619 * 4 2 1 34 34 H 1.08994 * 110.94479 * 148.89460 * 4 2 1 35 35 H 1.07994 * 120.07519 * 0.48111 * 6 5 4 36 36 H 0.96999 * 119.99726 * 5.07594 * 10 8 7 37 37 H 1.08998 * 109.47294 * 64.99680 * 11 10 8 38 38 H 1.09000 * 109.47290 * 304.99205 * 11 10 8 39 39 H 0.97005 * 119.99975 * 184.99946 * 16 15 13 40 40 H 1.09004 * 117.49590 * 214.99894 * 21 12 11 41 41 H 1.09000 * 117.49714 * 0.02562 * 21 12 11 42 42 H 1.08995 * 117.50368 * 359.97438 * 22 12 11 43 43 H 1.08999 * 117.49425 * 144.97593 * 22 12 11 44 44 H 1.08002 * 119.90273 * 180.12206 * 23 7 6 45 45 H 1.07999 * 119.78536 * 180.11779 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0699 1.4315 0.0000 4 6 2.0780 -0.7965 -1.2078 5 6 2.2602 -2.1799 -0.6132 6 6 2.4490 -3.4115 -1.1901 7 6 2.5745 -4.5462 -0.3830 8 6 2.7699 -5.8757 -0.9937 9 8 2.9111 -5.9771 -2.1971 10 7 2.7919 -6.9773 -0.2175 11 6 3.0963 -8.2832 -0.8076 12 6 2.9346 -9.3728 0.2543 13 6 1.6016 -9.4034 0.9565 14 1 1.5483 -9.6666 2.0026 15 6 0.4509 -9.0899 0.2650 16 7 0.5240 -8.6841 -0.9839 17 14 -1.2124 -9.2415 1.1018 18 1 -1.0233 -9.7144 2.4968 19 1 -1.8824 -7.9163 1.1154 20 1 -2.0535 -10.2139 0.3588 21 6 3.6328 -10.7112 0.0051 22 6 4.1719 -9.7530 1.0702 23 6 2.5191 -4.4108 1.0068 24 6 2.3406 -3.1716 1.5744 25 6 2.2101 -2.0379 0.7704 26 8 2.0390 -0.7361 1.1249 27 1 -0.3633 0.4865 0.9051 28 1 -0.3633 0.5407 -0.8740 29 1 -0.3634 -1.0272 -0.0314 30 1 3.1592 1.4091 -0.0313 31 1 1.6921 1.9624 -0.8739 32 1 1.7429 1.9432 0.9052 33 1 1.3545 -0.8148 -2.0229 34 1 3.0311 -0.3881 -1.5437 35 1 2.4958 -3.5042 -2.2650 36 1 2.6062 -6.9054 0.7318 37 1 4.1218 -8.2850 -1.1768 38 1 2.4123 -8.4769 -1.6339 39 1 -0.2774 -8.3945 -1.4475 40 1 3.1279 -11.6139 0.3490 41 1 4.2076 -10.8153 -0.9152 42 1 5.1010 -9.2273 0.8502 43 1 4.0216 -10.0250 2.1149 44 1 2.6172 -5.2824 1.6370 45 1 2.3007 -3.0745 2.6492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843588831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:29 Heat of formation + Delta-G solvation = -36.915769 kcal Electronic energy + Delta-G solvation = -26194.088919 eV Core-core repulsion = 22562.879889 eV Total energy + Delta-G solvation = -3631.209029 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.41907 -40.64432 -38.67882 -37.97697 -34.91886 -34.81083 -34.12860 -32.60093 -31.37238 -28.39262 -28.27564 -27.57977 -26.86583 -24.29702 -22.95865 -22.90234 -21.77891 -21.11384 -20.95005 -18.94299 -18.27538 -17.85415 -17.13660 -16.76451 -16.64230 -16.45002 -15.87424 -15.69339 -15.30681 -14.96504 -14.82587 -14.75563 -14.45843 -14.03323 -13.91075 -13.71981 -13.49011 -13.37413 -13.34724 -13.17614 -12.93967 -12.91398 -12.66836 -12.53140 -12.27819 -12.07173 -12.02528 -11.78689 -11.64153 -11.54879 -10.94916 -10.79560 -10.63790 -10.15087 -10.00579 -9.70142 -9.17104 -7.92922 -6.19606 -0.15496 0.25857 1.40068 1.45785 1.54319 1.89907 2.15496 2.40875 2.50395 2.85276 3.08286 3.37232 3.47946 3.65050 3.78357 3.82644 3.96667 4.01757 4.10892 4.20822 4.29925 4.46927 4.54919 4.61010 4.65360 4.71877 4.76091 4.80378 4.81515 4.86911 4.88737 4.97615 4.99721 5.10573 5.16511 5.19422 5.24333 5.28838 5.29293 5.37769 5.49410 5.54515 5.61738 5.89384 6.00441 6.12362 6.37888 6.78927 6.97549 7.46069 7.52503 8.92400 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017384 B = 0.003467 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.327544 B = 8074.924160 C = 8722.967138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 C -0.137 4.137 4 C -0.097 4.097 5 C -0.188 4.188 6 C -0.026 4.026 7 C -0.173 4.173 8 C 0.547 3.453 9 O -0.602 6.602 10 N -0.671 5.671 11 C 0.175 3.825 12 C 0.006 3.994 13 C -0.503 4.503 14 H 0.060 0.940 15 C 0.035 3.965 16 N -0.889 5.889 17 Si 0.947 3.053 18 H -0.264 1.264 19 H -0.285 1.285 20 H -0.289 1.289 21 C -0.200 4.200 22 C -0.185 4.185 23 C -0.048 4.048 24 C -0.146 4.146 25 C 0.123 3.877 26 O -0.304 6.304 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.403 0.597 37 H 0.018 0.982 38 H 0.081 0.919 39 H 0.255 0.745 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.148 0.852 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.870 19.574 4.015 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.057 3.943 3 C -0.193 4.193 4 C -0.134 4.134 5 C -0.189 4.189 6 C -0.045 4.045 7 C -0.176 4.176 8 C 0.335 3.665 9 O -0.486 6.486 10 N -0.317 5.317 11 C 0.051 3.949 12 C 0.005 3.995 13 C -0.541 4.541 14 H 0.079 0.921 15 C -0.166 4.166 16 N -0.526 5.526 17 Si 0.774 3.226 18 H -0.188 1.188 19 H -0.211 1.211 20 H -0.215 1.215 21 C -0.239 4.239 22 C -0.222 4.222 23 C -0.067 4.067 24 C -0.164 4.164 25 C 0.076 3.924 26 O -0.219 6.219 27 H 0.093 0.907 28 H 0.118 0.882 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.144 0.856 36 H 0.239 0.761 37 H 0.036 0.964 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.166 0.834 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.891 19.586 3.235 19.941 hybrid contribution -1.020 -0.774 0.346 1.326 sum 0.871 18.812 3.581 19.169 Atomic orbital electron populations 1.22235 0.92629 1.02537 1.04619 1.23117 0.95076 0.93815 0.82297 1.21875 1.01968 0.90845 1.04662 1.22020 1.03916 0.88809 0.98677 1.20892 1.07729 0.95898 0.94376 1.20314 0.94242 0.89780 1.00140 1.19853 1.10116 0.92865 0.94753 1.18456 0.76790 0.85085 0.86132 1.90651 1.54052 1.87814 1.16068 1.45435 1.67822 1.06480 1.11980 1.20772 0.95754 0.81045 0.97348 1.19278 0.91640 0.92312 0.96220 1.20737 0.89927 1.47407 0.95998 0.92137 1.25591 1.01734 0.94327 0.94995 1.70070 1.28689 1.42811 1.11040 0.85674 0.80588 0.77363 0.79022 1.18775 1.21124 1.21494 1.22965 1.05689 0.95721 0.99476 1.22957 0.98142 1.04837 0.96242 1.21211 0.94537 0.97921 0.93038 1.20382 1.06482 0.88478 1.01088 1.19955 0.93977 0.85474 0.92949 1.86825 1.79617 1.15846 1.39580 0.90700 0.88206 0.93761 0.91461 0.87832 0.90761 0.87520 0.87616 0.85585 0.76140 0.96412 0.90165 0.93526 0.90385 0.90639 0.89657 0.89580 0.83393 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 8.84 71.98 0.64 -1.86 16 2 C 0.09 1.61 1.26 -10.21 -0.01 1.59 16 3 C -0.14 -1.49 8.96 71.98 0.64 -0.85 16 4 C -0.10 -1.83 6.19 30.74 0.19 -1.64 16 5 C -0.19 -5.11 6.25 -19.55 -0.12 -5.23 16 6 C -0.03 -0.85 9.58 22.43 0.21 -0.63 16 7 C -0.17 -6.32 5.88 -20.06 -0.12 -6.44 16 8 C 0.55 24.63 7.75 86.71 0.67 25.30 16 9 O -0.60 -31.40 16.35 -4.00 -0.07 -31.47 16 10 N -0.67 -29.84 4.96 -466.21 -2.31 -32.16 16 11 C 0.17 8.51 4.62 86.38 0.40 8.91 16 12 C 0.01 0.29 2.04 -52.92 -0.11 0.18 16 13 C -0.50 -25.29 8.43 25.60 0.22 -25.07 16 14 H 0.06 3.00 7.82 -2.91 -0.02 2.97 16 15 C 0.04 1.81 5.31 84.65 0.45 2.26 16 16 N -0.89 -49.03 10.11 21.44 0.22 -48.81 16 17 Si 0.95 41.64 29.54 68.60 2.03 43.67 16 18 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 19 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 21 C -0.20 -8.52 9.96 30.62 0.30 -8.21 16 22 C -0.18 -7.26 9.92 30.62 0.30 -6.95 16 23 C -0.05 -1.47 9.49 22.45 0.21 -1.26 16 24 C -0.15 -3.87 10.05 22.42 0.23 -3.64 16 25 C 0.12 3.30 6.95 22.82 0.16 3.46 16 26 O -0.30 -7.24 10.51 -93.50 -0.98 -8.22 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.04 0.87 8.12 -2.39 -0.02 0.85 16 30 H 0.07 0.76 8.12 -2.39 -0.02 0.74 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.11 1.70 7.92 -2.39 -0.02 1.68 16 34 H 0.11 1.68 7.91 -2.39 -0.02 1.66 16 35 H 0.13 4.31 7.67 -2.91 -0.02 4.29 16 36 H 0.40 16.50 6.22 -92.71 -0.58 15.92 16 37 H 0.02 0.85 8.09 -2.39 -0.02 0.83 16 38 H 0.08 4.58 5.89 -2.39 -0.01 4.56 16 39 H 0.25 13.95 8.32 -92.70 -0.77 13.17 16 40 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 41 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 43 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 44 H 0.15 4.08 6.48 -2.91 -0.02 4.07 16 45 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -65.05 370.03 3.57 -61.48 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: 0.42 Total: 35.58 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 4.27 Total: -20.07 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -2.10 Total: -80.97 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -1.05 Total: -39.69 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -65.05 3.57 -61.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843588831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.564 kcal (2) G-P(sol) polarization free energy of solvation -65.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds