Wall clock time and date at job start Tue Mar 31 2020 11:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34807 * 119.99817 * 2 1 4 4 C 1.47210 * 120.00078 * 8.03547 * 3 2 1 5 5 C 1.39842 * 120.16466 * 213.16272 * 4 3 2 6 6 C 1.37894 * 119.81984 * 179.72211 * 5 4 3 7 7 C 1.38397 * 120.17490 * 0.57520 * 6 5 4 8 8 C 1.50696 * 119.83216 * 179.71834 * 7 6 5 9 9 C 1.38404 * 120.34326 * 359.69951 * 7 6 5 10 10 C 1.37899 * 120.17028 * 359.97438 * 9 7 6 11 11 C 1.46433 * 119.99996 * 179.97438 * 2 1 3 12 12 O 1.21689 * 119.99756 * 82.84144 * 11 2 1 13 13 N 1.34768 * 119.99967 * 262.84260 * 11 2 1 14 14 C 1.47020 * 125.65038 * 354.97960 * 13 11 2 15 15 C 1.54328 * 107.40556 * 178.90085 * 14 13 11 16 16 C 1.55406 * 102.82533 * 337.97904 * 15 14 13 17 17 O 1.42898 * 110.89287 * 277.26421 * 16 15 14 18 18 C 1.50700 * 111.06906 * 153.48438 * 16 15 14 19 19 H 1.08002 * 120.00303 * 272.84032 * 18 16 15 20 20 C 1.37877 * 119.99663 * 92.84288 * 18 16 15 21 21 N 1.31516 * 119.99998 * 172.31047 * 20 18 16 22 22 Si 1.86797 * 120.00389 * 352.30793 * 20 18 16 23 23 H 1.48510 * 109.46796 * 84.96282 * 22 20 18 24 24 H 1.48493 * 109.47517 * 204.96414 * 22 20 18 25 25 H 1.48494 * 109.47058 * 324.96652 * 22 20 18 26 26 C 1.47425 * 125.64837 * 175.02713 * 13 11 2 27 27 H 1.09008 * 109.47444 * 266.23345 * 1 2 3 28 28 H 1.09006 * 109.47191 * 26.23591 * 1 2 3 29 29 H 1.09002 * 109.47330 * 146.23490 * 1 2 3 30 30 H 1.08002 * 119.99543 * 188.02961 * 3 2 1 31 31 H 1.07994 * 120.08963 * 359.97438 * 5 4 3 32 32 H 1.07995 * 119.91102 * 180.29856 * 6 5 4 33 33 H 1.08997 * 109.47152 * 269.98052 * 8 7 6 34 34 H 1.09002 * 109.46964 * 29.98265 * 8 7 6 35 35 H 1.08998 * 109.47219 * 149.97842 * 8 7 6 36 36 H 1.08002 * 119.91814 * 180.02562 * 9 7 6 37 37 H 1.07999 * 120.08554 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.89013 * 298.39971 * 14 13 11 39 39 H 1.09009 * 109.88187 * 59.40843 * 14 13 11 40 40 H 1.08991 * 110.71823 * 96.24919 * 15 14 13 41 41 H 1.08998 * 110.72282 * 219.52603 * 15 14 13 42 42 H 0.96697 * 113.99934 * 177.98107 * 17 16 15 43 43 H 0.96993 * 120.00720 * 180.02562 * 21 20 18 44 44 H 1.08997 * 110.36629 * 322.92549 * 26 13 11 45 45 H 1.08998 * 110.36587 * 85.14337 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1675 0.0000 4 6 1.4557 2.4361 0.1782 5 6 1.9017 3.5964 -0.4623 6 6 1.2136 4.7797 -0.2950 7 6 0.0914 4.8234 0.5137 8 6 -0.6510 6.1221 0.6962 9 6 -0.3528 3.6805 1.1556 10 6 0.3206 2.4881 0.9930 11 6 2.2391 -1.2681 0.0006 12 8 2.4296 -1.8612 -1.0448 13 7 2.7020 -1.7785 1.1588 14 6 2.6350 -1.1212 2.4722 15 6 3.2593 -2.0851 3.5032 16 6 3.1340 -3.4670 2.8034 17 8 1.8309 -4.0205 2.9980 18 6 4.1990 -4.4175 3.2866 19 1 5.1670 -4.4325 2.8078 20 6 3.9376 -5.2679 4.3399 21 7 4.8075 -6.1993 4.6646 22 14 2.3479 -5.0973 5.3058 23 1 1.2670 -5.8472 4.6167 24 1 2.5376 -5.6463 6.6724 25 1 1.9750 -3.6628 5.3961 26 6 3.3602 -3.0879 1.3186 27 1 -0.3634 -0.0675 1.0255 28 1 -0.3634 0.9218 -0.4543 29 1 -0.3634 -0.8543 -0.5712 30 1 3.2530 1.1720 -0.1307 31 1 2.7802 3.5650 -1.0896 32 1 1.5539 5.6756 -0.7929 33 1 -0.2382 6.6597 1.5497 34 1 -0.5453 6.7303 -0.2022 35 1 -1.7065 5.9154 0.8729 36 1 -1.2296 3.7224 1.7848 37 1 -0.0275 1.5971 1.4941 38 1 3.1978 -0.1880 2.4490 39 1 1.5959 -0.9208 2.7339 40 1 4.3056 -1.8361 3.6796 41 1 2.6955 -2.0700 4.4360 42 1 1.6936 -4.8685 2.5542 43 1 4.6235 -6.7978 5.4053 44 1 2.8985 -3.8269 0.6638 45 1 4.4258 -3.0054 1.1045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844015761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:47 Heat of formation + Delta-G solvation = -41.879082 kcal Electronic energy + Delta-G solvation = -26059.486638 eV Core-core repulsion = 22428.062383 eV Total energy + Delta-G solvation = -3631.424255 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.07631 -39.41940 -37.68178 -35.50247 -34.76706 -32.41218 -32.26072 -31.16810 -30.27837 -28.46827 -28.35704 -26.53973 -25.22796 -23.15376 -22.74021 -21.84384 -20.56240 -19.85067 -18.36525 -17.52941 -16.69910 -16.28711 -15.67567 -15.66433 -15.33072 -15.05626 -14.95601 -14.58997 -14.10603 -13.90928 -13.73674 -13.63876 -13.21665 -13.06124 -12.73396 -12.64883 -12.56416 -12.28791 -12.10074 -11.99612 -11.89352 -11.62753 -11.55164 -11.35151 -11.14340 -11.03270 -10.53071 -10.42238 -10.25454 -9.90458 -9.49495 -9.31122 -9.13147 -8.72619 -8.58778 -8.20530 -8.13184 -6.24954 -4.36480 0.65629 1.20811 2.00759 2.80922 3.39228 3.43035 3.48043 3.58975 3.63421 4.42407 4.49379 4.57299 4.63624 4.74865 4.88865 4.91309 5.02060 5.06097 5.09698 5.19050 5.27327 5.34298 5.41389 5.44832 5.50245 5.53203 5.59031 5.76553 5.79830 5.81397 5.87909 5.92112 6.04175 6.07774 6.16693 6.34896 6.36893 6.42463 6.52851 6.54122 6.69284 6.70962 6.77553 7.01153 7.37997 7.88174 8.05671 8.40189 8.59341 8.76633 9.35624 10.84087 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.003023 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.191131 B = 9261.497469 C = 9786.218343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.128 4.128 3 C -0.092 4.092 4 C -0.058 4.058 5 C -0.101 4.101 6 C -0.123 4.123 7 C -0.087 4.087 8 C -0.115 4.115 9 C -0.123 4.123 10 C -0.105 4.105 11 C 0.564 3.436 12 O -0.548 6.548 13 N -0.601 5.601 14 C 0.103 3.897 15 C -0.122 4.122 16 C 0.220 3.780 17 O -0.560 6.560 18 C -0.554 4.554 19 H 0.082 0.918 20 C 0.073 3.927 21 N -0.885 5.885 22 Si 0.949 3.051 23 H -0.292 1.292 24 H -0.325 1.325 25 H -0.271 1.271 26 C 0.090 3.910 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.374 0.626 43 H 0.268 0.732 44 H 0.070 0.930 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.141 21.519 -6.179 24.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.131 4.131 3 C -0.111 4.111 4 C -0.058 4.058 5 C -0.119 4.119 6 C -0.141 4.141 7 C -0.087 4.087 8 C -0.172 4.172 9 C -0.141 4.141 10 C -0.122 4.122 11 C 0.352 3.648 12 O -0.427 6.427 13 N -0.333 5.333 14 C -0.020 4.020 15 C -0.160 4.160 16 C 0.179 3.821 17 O -0.368 6.368 18 C -0.592 4.592 19 H 0.100 0.900 20 C -0.132 4.132 21 N -0.520 5.520 22 Si 0.784 3.216 23 H -0.219 1.219 24 H -0.256 1.256 25 H -0.197 1.197 26 C -0.032 4.032 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.141 0.859 37 H 0.151 0.849 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.222 0.778 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.069 21.625 -6.348 24.684 hybrid contribution -0.476 -0.517 0.206 0.732 sum -10.545 21.108 -6.142 24.382 Atomic orbital electron populations 1.21006 0.90001 1.03433 1.02333 1.21780 0.96922 0.92761 1.01651 1.21840 0.99113 0.90125 1.00033 1.18924 0.95635 0.92993 0.98223 1.21330 0.99741 0.91992 0.98837 1.20936 0.95740 0.97866 0.99584 1.20029 0.95945 0.95618 0.97089 1.20808 0.99761 0.94292 1.02315 1.20980 1.00538 0.92244 1.00347 1.21680 0.94459 0.98360 0.97729 1.17829 0.78985 0.85131 0.82844 1.90820 1.59160 1.61873 1.30853 1.48565 1.57383 1.20240 1.07065 1.22103 1.00620 0.96161 0.83098 1.23009 1.01283 0.94126 0.97572 1.20284 0.81656 0.91399 0.88748 1.86111 1.35319 1.40710 1.74708 1.21119 0.99855 1.19891 1.18288 0.89991 1.25130 0.98000 0.93566 0.96496 1.69959 1.36535 1.17190 1.28285 0.85713 0.81392 0.78569 0.75889 1.21940 1.25639 1.19724 1.23135 0.97161 0.82856 1.00042 0.90615 0.90329 0.91248 0.85743 0.85772 0.86065 0.91148 0.91611 0.91545 0.85939 0.84928 0.92273 0.92079 0.89561 0.90074 0.77775 0.92294 0.91111 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 8.18 36.00 0.29 -1.01 16 2 C -0.13 -1.81 4.84 -102.54 -0.50 -2.30 16 3 C -0.09 -1.15 9.51 -37.16 -0.35 -1.50 16 4 C -0.06 -0.63 5.23 -105.06 -0.55 -1.18 16 5 C -0.10 -0.99 9.80 -39.11 -0.38 -1.38 16 6 C -0.12 -1.08 9.68 -39.65 -0.38 -1.46 16 7 C -0.09 -0.74 5.89 -104.50 -0.62 -1.36 16 8 C -0.12 -0.69 10.00 36.00 0.36 -0.33 16 9 C -0.12 -1.10 9.68 -39.64 -0.38 -1.48 16 10 C -0.10 -1.05 7.62 -39.11 -0.30 -1.35 16 11 C 0.56 10.19 7.21 -12.97 -0.09 10.09 16 12 O -0.55 -11.85 17.40 5.20 0.09 -11.76 16 13 N -0.60 -10.90 3.33 -172.15 -0.57 -11.47 16 14 C 0.10 1.67 6.46 -3.06 -0.02 1.65 16 15 C -0.12 -2.31 5.92 -24.76 -0.15 -2.46 16 16 C 0.22 4.74 0.70 -89.49 -0.06 4.68 16 17 O -0.56 -11.96 8.90 -35.23 -0.31 -12.27 16 18 C -0.55 -14.30 8.86 -34.44 -0.31 -14.61 16 19 H 0.08 2.31 8.00 -52.49 -0.42 1.89 16 20 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 21 N -0.89 -25.69 13.96 55.43 0.77 -24.92 16 22 Si 0.95 22.64 24.65 -169.99 -4.19 18.45 16 23 H -0.29 -6.82 7.06 56.52 0.40 -6.42 16 24 H -0.33 -8.01 7.11 56.52 0.40 -7.61 16 25 H -0.27 -6.31 5.56 56.52 0.31 -6.00 16 26 C 0.09 1.82 6.08 -2.53 -0.02 1.81 16 27 H 0.08 0.79 6.90 -51.92 -0.36 0.43 16 28 H 0.08 0.82 6.04 -51.93 -0.31 0.51 16 29 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 35 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 37 H 0.13 1.25 5.36 -52.49 -0.28 0.97 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 40 H 0.09 1.61 8.03 -51.93 -0.42 1.19 16 41 H 0.08 1.57 6.63 -51.93 -0.34 1.23 16 42 H 0.37 7.33 8.62 45.56 0.39 7.72 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 45 H 0.07 1.51 7.99 -51.93 -0.41 1.10 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -31.70 363.99 -8.30 -40.00 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.02 Total: 6.79 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -3.55 Total: -10.31 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.20 Total: -36.39 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.22 Total: -24.02 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.19 Total: 18.45 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.70 -8.30 -40.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.880 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds