Wall clock time and date at job start Tue Mar 31 2020 11:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34813 * 120.00149 * 2 1 4 4 C 1.47214 * 119.99914 * 174.84228 * 3 2 1 5 5 C 1.39829 * 120.16973 * 323.38257 * 4 3 2 6 6 C 1.37888 * 119.82487 * 179.78968 * 5 4 3 7 7 C 1.38401 * 120.17293 * 0.47000 * 6 5 4 8 8 C 1.50703 * 119.82785 * 179.76131 * 7 6 5 9 9 C 1.38404 * 120.34235 * 359.78528 * 7 6 5 10 10 C 1.37886 * 120.16898 * 359.97438 * 9 7 6 11 11 C 1.46427 * 120.00199 * 180.02562 * 2 1 3 12 12 O 1.21700 * 119.99443 * 286.22949 * 11 2 1 13 13 N 1.34776 * 120.00424 * 106.22658 * 11 2 1 14 14 C 1.47420 * 125.64832 * 355.64599 * 13 11 2 15 15 C 1.54909 * 104.83649 * 155.83433 * 14 13 11 16 16 C 1.55155 * 101.57796 * 37.00686 * 15 14 13 17 17 O 1.42904 * 110.72235 * 82.86247 * 16 15 14 18 18 C 1.50700 * 110.72126 * 205.96126 * 16 15 14 19 19 H 1.08005 * 119.99935 * 357.55515 * 18 16 15 20 20 C 1.37871 * 120.00355 * 177.56198 * 18 16 15 21 21 N 1.31516 * 120.00248 * 359.97438 * 20 18 16 22 22 Si 1.86807 * 120.00112 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47068 * 60.00202 * 22 20 18 24 24 H 1.48499 * 109.46724 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47074 * 299.99562 * 22 20 18 26 26 C 1.47020 * 125.65012 * 175.60181 * 13 11 2 27 27 H 1.09003 * 109.47056 * 265.01681 * 1 2 3 28 28 H 1.09008 * 109.47015 * 25.01255 * 1 2 3 29 29 H 1.08995 * 109.47438 * 145.01706 * 1 2 3 30 30 H 1.07997 * 119.99941 * 354.84024 * 3 2 1 31 31 H 1.08001 * 120.08600 * 0.03077 * 5 4 3 32 32 H 1.08002 * 119.91384 * 180.23448 * 6 5 4 33 33 H 1.09004 * 109.46969 * 270.02214 * 8 7 6 34 34 H 1.08994 * 109.47360 * 30.02437 * 8 7 6 35 35 H 1.08998 * 109.46692 * 150.02678 * 8 7 6 36 36 H 1.07993 * 119.91183 * 179.97438 * 9 7 6 37 37 H 1.08006 * 120.08370 * 179.97438 * 10 9 7 38 38 H 1.08998 * 110.36775 * 36.99088 * 14 13 11 39 39 H 1.09002 * 110.36368 * 274.67669 * 14 13 11 40 40 H 1.08994 * 110.99958 * 278.93554 * 15 14 13 41 41 H 1.08991 * 111.03776 * 155.09456 * 15 14 13 42 42 H 0.96695 * 113.99949 * 179.97438 * 17 16 15 43 43 H 0.97002 * 120.00549 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.88017 * 61.67663 * 26 13 11 45 45 H 1.09007 * 109.88105 * 300.51544 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1810 1.1675 0.0000 4 6 3.6487 1.1700 0.1146 5 6 4.2914 0.2343 0.9311 6 6 5.6667 0.2403 1.0298 7 6 6.4102 1.1755 0.3310 8 6 7.9126 1.1784 0.4488 9 6 5.7811 2.1082 -0.4750 10 6 4.4068 2.1119 -0.5879 11 6 2.2391 -1.2681 -0.0006 12 8 2.2882 -1.9427 1.0111 13 7 2.8586 -1.6881 -1.1214 14 6 2.8051 -1.0201 -2.4344 15 6 4.0927 -1.4768 -3.1646 16 6 4.2136 -2.9494 -2.6909 17 8 3.3873 -3.8048 -3.4831 18 6 5.6486 -3.4075 -2.7347 19 1 6.4165 -2.7434 -3.1033 20 6 5.9813 -4.6744 -2.3045 21 7 5.0464 -5.4830 -1.8554 22 14 7.7601 -5.2425 -2.3595 23 1 8.5919 -4.3472 -1.5159 24 1 7.8516 -6.6330 -1.8464 25 1 8.2504 -5.1992 -3.7605 26 6 3.7002 -2.8881 -1.2369 27 1 -0.3633 -0.0893 1.0238 28 1 -0.3633 0.9314 -0.4345 29 1 -0.3634 -0.8419 -0.5892 30 1 1.6443 2.1009 -0.0841 31 1 3.7124 -0.4936 1.4799 32 1 6.1649 -0.4841 1.6570 33 1 8.2111 1.8248 1.2742 34 1 8.2644 0.1639 0.6363 35 1 8.3490 1.5487 -0.4788 36 1 6.3680 2.8350 -1.0168 37 1 3.9172 2.8406 -1.2170 38 1 2.8037 0.0627 -2.3094 39 1 1.9218 -1.3400 -2.9871 40 1 4.9533 -0.8908 -2.8422 41 1 3.9692 -1.4232 -4.2462 42 1 3.4270 -4.7366 -3.2278 43 1 5.2804 -6.3745 -1.5530 44 1 3.1105 -3.7773 -1.0141 45 1 4.5428 -2.8175 -0.5489 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844015762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:52 Heat of formation + Delta-G solvation = -67.859879 kcal Electronic energy + Delta-G solvation = -27578.289586 eV Core-core repulsion = 23945.738719 eV Total energy + Delta-G solvation = -3632.550867 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.48249 -39.99972 -39.00236 -36.28557 -35.88941 -34.22817 -33.30978 -31.87416 -31.67466 -29.67382 -29.30258 -27.41142 -26.08455 -24.89565 -23.62660 -22.76098 -21.81112 -21.39821 -19.42544 -19.12027 -18.05495 -17.41383 -16.99767 -16.81183 -16.41620 -16.23730 -15.90054 -15.27106 -14.99590 -14.84999 -14.79270 -14.61470 -14.37837 -14.12466 -14.07739 -13.85802 -13.54176 -13.35409 -13.19377 -13.08269 -13.03286 -12.87221 -12.82611 -12.55577 -12.37183 -12.32975 -12.12811 -11.98096 -11.80345 -11.22305 -11.01978 -10.67882 -10.50732 -10.30505 -9.85987 -9.59363 -9.00209 -8.29441 -6.45416 -0.11270 0.50610 1.09025 1.38879 1.39167 1.47461 1.63420 2.18545 2.35613 2.88096 2.96836 3.55028 3.74469 3.78178 3.93277 4.02545 4.06978 4.11773 4.20843 4.34598 4.36697 4.45347 4.53262 4.59162 4.63454 4.67098 4.77508 4.80027 4.82920 4.92243 4.97553 5.01454 5.09064 5.13989 5.17936 5.22821 5.28123 5.35749 5.41234 5.48858 5.53786 5.70210 5.71499 5.73997 6.01186 6.11444 6.58852 6.66061 7.12400 7.25418 7.32772 8.76498 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.011133 B = 0.006099 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.424660 B = 4590.155563 C = 6063.509886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.165 4.165 3 C -0.061 4.061 4 C -0.090 4.090 5 C -0.127 4.127 6 C -0.141 4.141 7 C -0.086 4.086 8 C -0.114 4.114 9 C -0.124 4.124 10 C -0.090 4.090 11 C 0.561 3.439 12 O -0.606 6.606 13 N -0.600 5.600 14 C 0.111 3.889 15 C -0.107 4.107 16 C 0.237 3.763 17 O -0.589 6.589 18 C -0.554 4.554 19 H 0.066 0.934 20 C 0.026 3.974 21 N -0.918 5.918 22 Si 0.960 3.040 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.265 1.265 26 C 0.128 3.872 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.054 0.946 30 H 0.182 0.818 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.377 0.623 43 H 0.270 0.730 44 H 0.024 0.976 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.458 18.655 0.303 18.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.167 4.167 3 C -0.079 4.079 4 C -0.090 4.090 5 C -0.145 4.145 6 C -0.159 4.159 7 C -0.086 4.086 8 C -0.170 4.170 9 C -0.142 4.142 10 C -0.108 4.108 11 C 0.352 3.648 12 O -0.490 6.490 13 N -0.331 5.331 14 C -0.011 4.011 15 C -0.145 4.145 16 C 0.197 3.803 17 O -0.397 6.397 18 C -0.592 4.592 19 H 0.084 0.916 20 C -0.175 4.175 21 N -0.557 5.557 22 Si 0.785 3.215 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.190 1.190 26 C 0.004 3.996 27 H 0.094 0.906 28 H 0.131 0.869 29 H 0.073 0.927 30 H 0.199 0.801 31 H 0.117 0.883 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.172 0.828 37 H 0.181 0.819 38 H 0.116 0.884 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.227 0.773 43 H 0.080 0.920 44 H 0.043 0.957 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.638 18.699 0.637 18.895 hybrid contribution 1.132 -2.208 0.947 2.656 sum -1.506 16.491 1.583 16.635 Atomic orbital electron populations 1.20703 0.87044 1.04491 1.03022 1.21965 0.98366 0.90938 1.05460 1.22385 0.91298 0.97814 0.96440 1.19221 0.93931 0.96925 0.98942 1.21707 0.95412 0.97896 0.99527 1.21020 0.93966 0.99610 1.01343 1.20336 0.97252 0.94930 0.96125 1.20850 0.89837 1.02563 1.03764 1.21307 0.94989 0.98992 0.98862 1.21604 0.93774 0.97541 0.97874 1.18721 0.77957 0.86619 0.81483 1.90757 1.64653 1.59367 1.34192 1.48729 1.47580 1.26480 1.10274 1.22395 0.98595 0.97993 0.82111 1.22671 0.96788 0.94250 1.00785 1.19652 0.88160 0.88278 0.84253 1.86067 1.69384 1.22905 1.61348 1.21769 0.93706 0.99930 1.43818 0.91626 1.25808 1.01808 0.96673 0.93172 1.69749 1.34630 1.08581 1.42767 0.85568 0.79828 0.77190 0.78887 1.19833 1.20933 1.18965 1.22414 0.91129 0.85224 1.00798 0.90587 0.86867 0.92667 0.80095 0.88269 0.87742 0.89569 0.92706 0.89782 0.82805 0.81947 0.88363 0.91066 0.90491 0.89175 0.77328 0.92050 0.95703 0.95510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 10.04 71.23 0.72 -1.34 16 2 C -0.16 -4.79 4.81 -18.52 -0.09 -4.88 16 3 C -0.06 -1.43 8.64 23.84 0.21 -1.22 16 4 C -0.09 -2.52 5.14 -20.15 -0.10 -2.63 16 5 C -0.13 -4.59 8.29 22.57 0.19 -4.40 16 6 C -0.14 -4.84 9.68 22.23 0.22 -4.63 16 7 C -0.09 -2.37 5.89 -19.79 -0.12 -2.49 16 8 C -0.11 -2.48 10.00 71.24 0.71 -1.77 16 9 C -0.12 -2.77 9.68 22.23 0.22 -2.56 16 10 C -0.09 -1.97 9.80 22.57 0.22 -1.75 16 11 C 0.56 23.24 4.31 86.38 0.37 23.61 16 12 O -0.61 -30.69 15.92 -4.35 -0.07 -30.76 16 13 N -0.60 -25.58 3.32 -816.80 -2.71 -28.28 16 14 C 0.11 3.87 6.71 86.86 0.58 4.45 16 15 C -0.11 -4.24 6.22 31.99 0.20 -4.04 16 16 C 0.24 11.78 0.86 -10.35 -0.01 11.77 16 17 O -0.59 -30.57 13.09 -148.98 -1.95 -32.52 16 18 C -0.55 -29.62 8.12 25.60 0.21 -29.41 16 19 H 0.07 3.41 7.77 -2.91 -0.02 3.39 16 20 C 0.03 1.39 5.26 84.65 0.45 1.84 16 21 N -0.92 -51.16 10.97 21.45 0.24 -50.93 16 22 Si 0.96 42.68 29.54 68.60 2.03 44.70 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 26 C 0.13 6.63 5.39 86.73 0.47 7.09 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.11 1.47 8.01 -2.38 -0.02 1.45 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.18 2.41 8.02 -2.91 -0.02 2.39 16 31 H 0.10 4.28 5.18 -2.91 -0.02 4.27 16 32 H 0.10 3.68 8.06 -2.91 -0.02 3.66 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.05 1.33 8.08 -2.39 -0.02 1.31 16 35 H 0.08 1.52 8.08 -2.39 -0.02 1.50 16 36 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 38 H 0.10 2.75 6.60 -2.39 -0.02 2.73 16 39 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.08 3.00 8.04 -2.39 -0.02 2.98 16 41 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 42 H 0.38 20.55 7.17 -74.06 -0.53 20.02 16 43 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 44 H 0.02 1.44 8.01 -2.39 -0.02 1.42 16 45 H 0.03 1.55 7.82 -2.38 -0.02 1.53 16 Total: -1.00 -71.25 368.99 2.42 -68.83 By element: Atomic # 1 Polarization: 40.84 SS G_CDS: 0.46 Total: 41.30 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 4.43 Total: -12.34 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -2.47 Total: -79.21 kcal Atomic # 8 Polarization: -61.26 SS G_CDS: -2.02 Total: -63.28 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -71.25 2.42 -68.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.966 kcal (2) G-P(sol) polarization free energy of solvation -71.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds