Wall clock time and date at job start Tue Mar 31 2020 12:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38019 * 119.94531 * 2 1 4 4 C 1.38094 * 120.32873 * 179.97438 * 3 2 1 5 5 C 1.50708 * 119.90030 * 180.02562 * 4 3 2 6 6 C 1.39743 * 120.20132 * 0.02562 * 4 3 2 7 7 C 1.47870 * 120.05797 * 180.02562 * 6 4 3 8 8 O 1.21543 * 120.00087 * 55.70428 * 7 6 4 9 9 N 1.34782 * 119.99756 * 235.69830 * 7 6 4 10 10 C 1.46922 * 120.62863 * 356.03072 * 9 7 6 11 11 C 1.53197 * 108.77488 * 126.11925 * 10 9 7 12 12 C 1.53038 * 109.31396 * 54.62790 * 11 10 9 13 13 C 1.53037 * 109.54144 * 298.63936 * 12 11 10 14 14 H 1.09001 * 109.49719 * 301.41388 * 13 12 11 15 15 C 1.50692 * 109.49820 * 181.34758 * 13 12 11 16 16 H 1.08006 * 120.00385 * 359.97438 * 15 13 12 17 17 C 1.37886 * 120.00152 * 180.02562 * 15 13 12 18 18 N 1.31515 * 119.99768 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00116 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47020 * 59.99886 * 19 17 15 21 21 H 1.48494 * 109.47116 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47168 * 299.99727 * 19 17 15 23 23 C 1.46919 * 120.62873 * 175.75134 * 9 7 6 24 24 C 1.39229 * 119.87871 * 0.27651 * 6 4 3 25 25 C 1.39614 * 119.67841 * 359.45186 * 24 6 4 26 26 C 1.47188 * 120.10281 * 180.27606 * 25 24 6 27 27 O 1.21251 * 119.99906 * 0.26884 * 26 25 24 28 28 H 1.08997 * 109.46758 * 89.99725 * 1 2 3 29 29 H 1.08997 * 109.47139 * 210.00041 * 1 2 3 30 30 H 1.09001 * 109.46683 * 329.99799 * 1 2 3 31 31 H 1.08008 * 119.83432 * 0.02562 * 3 2 1 32 32 H 1.08993 * 109.47330 * 274.25211 * 5 4 3 33 33 H 1.09002 * 109.46928 * 34.25612 * 5 4 3 34 34 H 1.08998 * 109.46893 * 154.24693 * 5 4 3 35 35 H 1.09001 * 109.58622 * 245.90125 * 10 9 7 36 36 H 1.08997 * 109.59228 * 6.18671 * 10 9 7 37 37 H 1.09000 * 109.49636 * 174.58468 * 11 10 9 38 38 H 1.09006 * 109.49423 * 294.68117 * 11 10 9 39 39 H 1.09009 * 109.45824 * 58.65977 * 12 11 10 40 40 H 1.08997 * 109.45917 * 178.61101 * 12 11 10 41 41 H 0.96993 * 120.00055 * 180.02562 * 18 17 15 42 42 H 1.09009 * 109.58847 * 353.66828 * 23 9 7 43 43 H 1.08998 * 109.59016 * 114.09736 * 23 9 7 44 44 H 1.07999 * 120.15710 * 179.70053 * 24 6 4 45 45 H 1.08001 * 119.99899 * 180.27475 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1959 0.0000 4 6 3.5769 1.2052 0.0005 5 6 4.3194 2.5167 0.0011 6 6 4.2880 0.0022 0.0005 7 6 5.7666 0.0158 0.0017 8 8 6.3682 0.6140 0.8720 9 7 6.4472 -0.6354 -0.9624 10 6 5.7373 -1.4345 -1.9704 11 6 6.1670 -0.9650 -3.3639 12 6 7.6923 -1.0286 -3.4714 13 6 8.3180 -0.0949 -2.4328 14 1 7.9645 0.9227 -2.5986 15 6 9.8190 -0.1332 -2.5615 16 1 10.2811 -0.7611 -3.3091 17 6 10.6025 0.6325 -1.7243 18 7 10.0399 1.3966 -0.8137 19 14 12.4631 0.5844 -1.8834 20 1 12.8550 1.0270 -3.2458 21 1 13.0697 1.4907 -0.8755 22 1 12.9438 -0.8020 -1.6560 23 6 7.9127 -0.5546 -1.0288 24 6 3.6016 -1.2092 -0.0058 25 6 2.2055 -1.2127 -0.0006 26 6 1.4704 -2.4879 -0.0011 27 8 2.0775 -3.5375 -0.0011 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6524 2.1292 0.0004 32 1 4.4325 2.8706 -1.0235 33 1 3.7590 3.2512 0.5795 34 1 5.3037 2.3767 0.4480 35 1 5.9895 -2.4876 -1.8457 36 1 4.6621 -1.2998 -1.8526 37 1 5.7217 -1.6124 -4.1192 38 1 5.8337 0.0609 -3.5209 39 1 8.0268 -2.0501 -3.2897 40 1 7.9991 -0.7186 -4.4702 41 1 10.5911 1.9355 -0.2250 42 1 8.2730 0.1627 -0.2912 43 1 8.3423 -1.5359 -0.8274 44 1 4.1466 -2.1416 -0.0107 45 1 0.3904 -2.4886 -0.0015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:24 Heat of formation + Delta-G solvation = -55.210544 kcal Electronic energy + Delta-G solvation = -26832.368013 eV Core-core repulsion = 23200.365662 eV Total energy + Delta-G solvation = -3632.002350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.59893 -39.25525 -38.12224 -36.68141 -33.82300 -33.45147 -32.31815 -31.59186 -29.79562 -27.98435 -27.79804 -25.07699 -24.79936 -23.63862 -22.15240 -21.84102 -20.96358 -19.54773 -18.47176 -17.41324 -16.53442 -16.19066 -15.85796 -15.14972 -15.02257 -14.77507 -14.68572 -14.51555 -13.99496 -13.85693 -13.74014 -13.63477 -13.39314 -13.23132 -12.80362 -12.61204 -12.59601 -12.19176 -12.10805 -11.83845 -11.70183 -11.50512 -11.41291 -10.98307 -10.88383 -10.53074 -10.39361 -10.24294 -9.97803 -9.90330 -9.35048 -9.15359 -8.99268 -8.85569 -8.68609 -8.44286 -7.77510 -6.01303 -4.09780 0.45576 1.03956 2.22014 3.13510 3.31454 3.37573 3.38855 3.52521 3.75692 4.04306 4.41791 4.44684 4.57297 4.67897 4.87597 4.99369 5.11854 5.23230 5.28815 5.33987 5.36907 5.42003 5.51460 5.63045 5.67202 5.68450 5.78091 5.80299 5.99965 6.06037 6.14152 6.17592 6.24377 6.30786 6.50922 6.58904 6.65724 6.70516 6.85144 6.95978 7.12869 7.21928 7.24467 7.61508 7.84697 7.97453 8.20264 8.36809 8.77751 8.94211 9.55859 11.04198 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.003698 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.536540 B = 7570.647180 C = 8208.568302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.021 4.021 3 C -0.143 4.143 4 C 0.003 3.997 5 C -0.142 4.142 6 C -0.135 4.135 7 C 0.551 3.449 8 O -0.529 6.529 9 N -0.595 5.595 10 C 0.101 3.899 11 C -0.132 4.132 12 C -0.111 4.111 13 C 0.041 3.959 14 H 0.029 0.971 15 C -0.522 4.522 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.112 3.888 24 C -0.023 4.023 25 C -0.211 4.211 26 C 0.382 3.618 27 O -0.460 6.460 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.133 0.867 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.264 0.736 42 H 0.124 0.876 43 H 0.044 0.956 44 H 0.138 0.862 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.825 -1.823 -0.193 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.022 4.022 3 C -0.161 4.161 4 C 0.003 3.997 5 C -0.198 4.198 6 C -0.138 4.138 7 C 0.338 3.662 8 O -0.407 6.407 9 N -0.327 5.327 10 C -0.022 4.022 11 C -0.171 4.171 12 C -0.149 4.149 13 C 0.022 3.978 14 H 0.047 0.953 15 C -0.560 4.560 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.519 5.519 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.008 4.008 24 C -0.042 4.042 25 C -0.212 4.212 26 C 0.241 3.759 27 O -0.333 6.333 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.151 0.849 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.141 0.859 43 H 0.062 0.938 44 H 0.156 0.844 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.090 -1.951 0.420 20.189 hybrid contribution 0.972 0.086 -0.153 0.988 sum -19.118 -1.865 0.267 19.211 Atomic orbital electron populations 1.20968 0.90569 1.03525 1.03127 1.20182 0.96006 0.92065 0.93932 1.20833 0.93095 0.97808 1.04332 1.20210 0.93357 0.94919 0.91257 1.21181 1.02678 0.92767 1.03138 1.20036 0.94615 0.93500 1.05684 1.18165 0.85977 0.79668 0.82419 1.90771 1.69456 1.43861 1.36586 1.48492 1.09655 1.47446 1.27083 1.21850 0.96365 0.95042 0.88963 1.21936 0.98831 1.01003 0.95286 1.21636 0.92165 1.00575 1.00495 1.18960 0.95127 0.94431 0.89272 0.95312 1.21042 0.90494 1.26326 1.18166 0.92381 1.25047 0.98726 0.95000 0.95176 1.69864 1.35370 1.26836 1.19785 0.86642 0.85543 0.77969 0.77769 1.20290 1.21244 1.20232 1.22357 0.73327 1.01559 1.03532 1.21534 0.93178 0.97672 0.91794 1.20565 0.94245 0.95537 1.10884 1.24057 0.94930 0.86594 0.70352 1.90537 1.73443 1.34549 1.34801 0.90150 0.90941 0.90663 0.84933 0.90391 0.91011 0.88347 0.91787 0.90784 0.92193 0.92204 0.93122 0.92954 0.92580 0.85852 0.93766 0.84431 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.67 9.51 36.01 0.34 -0.33 16 2 C -0.02 -0.20 5.93 -104.06 -0.62 -0.82 16 3 C -0.14 -1.52 9.33 -39.71 -0.37 -1.89 16 4 C 0.00 0.05 5.92 -104.11 -0.62 -0.57 16 5 C -0.14 -2.00 9.67 36.01 0.35 -1.66 16 6 C -0.14 -2.20 4.84 -105.02 -0.51 -2.71 16 7 C 0.55 11.33 6.51 -12.32 -0.08 11.25 16 8 O -0.53 -12.84 14.58 5.33 0.08 -12.76 16 9 N -0.60 -12.21 2.97 -173.87 -0.52 -12.73 16 10 C 0.10 1.69 5.59 -3.71 -0.02 1.67 16 11 C -0.13 -2.20 6.08 -26.61 -0.16 -2.37 16 12 C -0.11 -2.22 5.10 -26.69 -0.14 -2.36 16 13 C 0.04 1.01 2.25 -91.66 -0.21 0.81 16 14 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 15 C -0.52 -14.08 8.56 -34.44 -0.29 -14.38 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 18 N -0.88 -25.44 11.40 55.43 0.63 -24.81 16 19 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.11 2.72 5.39 -3.71 -0.02 2.70 16 24 C -0.02 -0.33 7.00 -38.70 -0.27 -0.60 16 25 C -0.21 -2.40 5.86 -105.11 -0.62 -3.02 16 26 C 0.38 3.81 10.88 34.37 0.37 4.18 16 27 O -0.46 -6.40 17.16 5.58 0.10 -6.31 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.29 6.31 -51.93 -0.33 -0.04 16 30 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 31 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 34 H 0.10 1.78 5.59 -51.93 -0.29 1.49 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.10 4.79 -51.93 -0.25 0.85 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.00 8.14 -51.92 -0.42 0.57 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.12 3.48 5.15 -51.92 -0.27 3.21 16 43 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.14 2.05 7.06 -52.49 -0.37 1.68 16 45 H 0.10 0.58 6.34 -52.49 -0.33 0.24 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -32.47 359.53 -8.71 -41.18 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.45 Total: 2.24 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -2.95 Total: -8.44 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.12 Total: -37.53 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.17 Total: -19.07 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.47 -8.71 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.028 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds