Wall clock time and date at job start Tue Mar 31 2020 12:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38019 * 119.94531 * 2 1 4 4 C 1.38094 * 120.32873 * 179.97438 * 3 2 1 5 5 C 1.50708 * 119.90030 * 180.02562 * 4 3 2 6 6 C 1.39743 * 120.20132 * 0.02562 * 4 3 2 7 7 C 1.47870 * 120.05797 * 180.02562 * 6 4 3 8 8 O 1.21543 * 120.00087 * 55.70428 * 7 6 4 9 9 N 1.34782 * 119.99756 * 235.69830 * 7 6 4 10 10 C 1.46922 * 120.62863 * 356.03072 * 9 7 6 11 11 C 1.53197 * 108.77488 * 126.11925 * 10 9 7 12 12 C 1.53038 * 109.31396 * 54.62790 * 11 10 9 13 13 C 1.53037 * 109.54144 * 298.63936 * 12 11 10 14 14 H 1.09001 * 109.49719 * 301.41388 * 13 12 11 15 15 C 1.50692 * 109.49820 * 181.34758 * 13 12 11 16 16 H 1.08006 * 120.00385 * 359.97438 * 15 13 12 17 17 C 1.37886 * 120.00152 * 180.02562 * 15 13 12 18 18 N 1.31515 * 119.99768 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00116 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47020 * 59.99886 * 19 17 15 21 21 H 1.48494 * 109.47116 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47168 * 299.99727 * 19 17 15 23 23 C 1.46919 * 120.62873 * 175.75134 * 9 7 6 24 24 C 1.39229 * 119.87871 * 0.27651 * 6 4 3 25 25 C 1.39614 * 119.67841 * 359.45186 * 24 6 4 26 26 C 1.47188 * 120.10281 * 180.27606 * 25 24 6 27 27 O 1.21251 * 119.99906 * 0.26884 * 26 25 24 28 28 H 1.08997 * 109.46758 * 89.99725 * 1 2 3 29 29 H 1.08997 * 109.47139 * 210.00041 * 1 2 3 30 30 H 1.09001 * 109.46683 * 329.99799 * 1 2 3 31 31 H 1.08008 * 119.83432 * 0.02562 * 3 2 1 32 32 H 1.08993 * 109.47330 * 274.25211 * 5 4 3 33 33 H 1.09002 * 109.46928 * 34.25612 * 5 4 3 34 34 H 1.08998 * 109.46893 * 154.24693 * 5 4 3 35 35 H 1.09001 * 109.58622 * 245.90125 * 10 9 7 36 36 H 1.08997 * 109.59228 * 6.18671 * 10 9 7 37 37 H 1.09000 * 109.49636 * 174.58468 * 11 10 9 38 38 H 1.09006 * 109.49423 * 294.68117 * 11 10 9 39 39 H 1.09009 * 109.45824 * 58.65977 * 12 11 10 40 40 H 1.08997 * 109.45917 * 178.61101 * 12 11 10 41 41 H 0.96993 * 120.00055 * 180.02562 * 18 17 15 42 42 H 1.09009 * 109.58847 * 353.66828 * 23 9 7 43 43 H 1.08998 * 109.59016 * 114.09736 * 23 9 7 44 44 H 1.07999 * 120.15710 * 179.70053 * 24 6 4 45 45 H 1.08001 * 119.99899 * 180.27475 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1959 0.0000 4 6 3.5769 1.2052 0.0005 5 6 4.3194 2.5167 0.0011 6 6 4.2880 0.0022 0.0005 7 6 5.7666 0.0158 0.0017 8 8 6.3682 0.6140 0.8720 9 7 6.4472 -0.6354 -0.9624 10 6 5.7373 -1.4345 -1.9704 11 6 6.1670 -0.9650 -3.3639 12 6 7.6923 -1.0286 -3.4714 13 6 8.3180 -0.0949 -2.4328 14 1 7.9645 0.9227 -2.5986 15 6 9.8190 -0.1332 -2.5615 16 1 10.2811 -0.7611 -3.3091 17 6 10.6025 0.6325 -1.7243 18 7 10.0399 1.3966 -0.8137 19 14 12.4631 0.5844 -1.8834 20 1 12.8550 1.0270 -3.2458 21 1 13.0697 1.4907 -0.8755 22 1 12.9438 -0.8020 -1.6560 23 6 7.9127 -0.5546 -1.0288 24 6 3.6016 -1.2092 -0.0058 25 6 2.2055 -1.2127 -0.0006 26 6 1.4704 -2.4879 -0.0011 27 8 2.0775 -3.5375 -0.0011 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6524 2.1292 0.0004 32 1 4.4325 2.8706 -1.0235 33 1 3.7590 3.2512 0.5795 34 1 5.3037 2.3767 0.4480 35 1 5.9895 -2.4876 -1.8457 36 1 4.6621 -1.2998 -1.8526 37 1 5.7217 -1.6124 -4.1192 38 1 5.8337 0.0609 -3.5209 39 1 8.0268 -2.0501 -3.2897 40 1 7.9991 -0.7186 -4.4702 41 1 10.5911 1.9355 -0.2250 42 1 8.2730 0.1627 -0.2912 43 1 8.3423 -1.5359 -0.8274 44 1 4.1466 -2.1416 -0.0107 45 1 0.3904 -2.4886 -0.0015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855256569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:23 Heat of formation + Delta-G solvation = -74.829693 kcal Electronic energy + Delta-G solvation = -26833.218763 eV Core-core repulsion = 23200.365662 eV Total energy + Delta-G solvation = -3632.853101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.80986 -40.47108 -39.21465 -38.31765 -35.44024 -34.64740 -33.76611 -32.96638 -31.56678 -29.03376 -28.65108 -27.02299 -26.24871 -24.71063 -23.56095 -23.04971 -22.23373 -20.98762 -19.85888 -18.83787 -18.16673 -17.50312 -17.33053 -16.58078 -16.31084 -16.14524 -15.92309 -15.53815 -15.38475 -15.20256 -14.95144 -14.69219 -14.62262 -14.49440 -14.33749 -13.94507 -13.87392 -13.57480 -13.23610 -13.01319 -12.88728 -12.86635 -12.63689 -12.46459 -12.42159 -12.30302 -12.23524 -11.87090 -11.68135 -11.20782 -11.01627 -10.88023 -10.59901 -10.53013 -9.88731 -9.71240 -9.48658 -8.13893 -6.31081 -0.45013 0.02908 1.33414 1.39092 1.40909 1.49172 1.68950 2.12425 2.40256 2.65978 3.14191 3.24605 3.45457 3.69186 3.73559 3.90465 3.96207 4.06632 4.11505 4.25861 4.39277 4.49090 4.53932 4.60164 4.62803 4.66064 4.70701 4.72838 4.76144 4.86748 4.96011 5.01241 5.07703 5.12853 5.17492 5.19912 5.29082 5.33466 5.37823 5.44205 5.49668 5.56701 5.79796 5.83277 5.93469 6.28486 6.47539 6.53587 6.80620 7.17151 7.39111 8.89708 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.003698 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.536540 B = 7570.647180 C = 8208.568302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.004 3.996 3 C -0.135 4.135 4 C -0.012 4.012 5 C -0.138 4.138 6 C -0.163 4.163 7 C 0.545 3.455 8 O -0.583 6.583 9 N -0.602 5.602 10 C 0.100 3.900 11 C -0.123 4.123 12 C -0.105 4.105 13 C 0.041 3.959 14 H -0.011 1.011 15 C -0.538 4.538 16 H 0.063 0.937 17 C 0.011 3.989 18 N -0.915 5.915 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.288 1.288 22 H -0.268 1.268 23 C 0.125 3.875 24 C -0.034 4.034 25 C -0.216 4.216 26 C 0.393 3.607 27 O -0.504 6.504 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.169 0.831 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.260 0.740 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.122 0.878 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.091 -2.701 -1.507 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.004 3.996 3 C -0.152 4.152 4 C -0.013 4.013 5 C -0.194 4.194 6 C -0.166 4.166 7 C 0.334 3.666 8 O -0.464 6.464 9 N -0.332 5.332 10 C -0.022 4.022 11 C -0.161 4.161 12 C -0.143 4.143 13 C 0.022 3.978 14 H 0.007 0.993 15 C -0.577 4.577 16 H 0.081 0.919 17 C -0.189 4.189 18 N -0.553 5.553 19 Si 0.784 3.216 20 H -0.191 1.191 21 H -0.214 1.214 22 H -0.193 1.193 23 C 0.004 3.996 24 C -0.053 4.053 25 C -0.217 4.217 26 C 0.254 3.746 27 O -0.379 6.379 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.186 0.814 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.140 0.860 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -24.390 -2.850 -0.931 24.574 hybrid contribution 2.179 0.391 0.283 2.231 sum -22.212 -2.459 -0.648 22.357 Atomic orbital electron populations 1.21171 0.86500 1.05563 1.05071 1.20695 0.98546 0.90428 0.89936 1.21205 0.91271 1.00057 1.02688 1.20321 0.95077 0.93512 0.92350 1.21098 1.00741 0.94324 1.03270 1.19674 0.91400 0.95558 1.09986 1.18976 0.88203 0.78185 0.81251 1.90722 1.71212 1.45906 1.38580 1.48502 1.08294 1.48126 1.28274 1.22099 0.97345 0.94896 0.87849 1.21892 0.96253 1.01693 0.96298 1.21522 0.94528 0.99346 0.98869 1.18876 0.94531 0.93488 0.90888 0.99266 1.21480 0.92051 1.26110 1.18041 0.91888 1.25904 1.03514 0.94673 0.94788 1.70071 1.36842 1.27756 1.20661 0.85594 0.79841 0.78168 0.77988 1.19136 1.21376 1.19344 1.21780 0.76187 0.99448 1.02231 1.21444 0.94880 0.96055 0.92943 1.20932 0.92932 0.97692 1.10129 1.24804 0.96885 0.84778 0.68088 1.90548 1.74653 1.35863 1.36865 0.87876 0.88782 0.88933 0.81365 0.90283 0.87919 0.93266 0.90652 0.88443 0.87880 0.92912 0.92558 0.92464 0.93078 0.90276 0.94742 0.85977 0.81915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.48 9.51 71.24 0.68 0.20 16 2 C 0.00 0.06 5.93 -19.50 -0.12 -0.05 16 3 C -0.13 -2.38 9.33 22.18 0.21 -2.17 16 4 C -0.01 -0.32 5.92 -19.53 -0.12 -0.44 16 5 C -0.14 -4.08 9.67 71.24 0.69 -3.39 16 6 C -0.16 -5.49 4.84 -20.13 -0.10 -5.59 16 7 C 0.54 24.30 6.51 86.79 0.56 24.87 16 8 O -0.58 -31.44 14.58 -3.85 -0.06 -31.50 16 9 N -0.60 -26.39 2.97 -822.29 -2.44 -28.84 16 10 C 0.10 3.35 5.59 86.36 0.48 3.83 16 11 C -0.12 -4.00 6.08 30.67 0.19 -3.81 16 12 C -0.11 -4.24 5.10 30.62 0.16 -4.08 16 13 C 0.04 2.15 2.25 -11.46 -0.03 2.13 16 14 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 15 C -0.54 -30.29 8.56 25.60 0.22 -30.07 16 16 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 17 C 0.01 0.62 5.30 84.66 0.45 1.06 16 18 N -0.91 -56.44 11.40 21.45 0.24 -56.20 16 19 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 C 0.13 6.60 5.39 86.37 0.47 7.07 16 24 C -0.03 -0.97 7.00 22.84 0.16 -0.81 16 25 C -0.22 -4.24 5.86 -20.18 -0.12 -4.36 16 26 C 0.39 6.24 10.88 70.17 0.76 7.00 16 27 O -0.50 -12.93 17.16 -2.94 -0.05 -12.98 16 28 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.09 0.02 6.31 -2.39 -0.02 0.01 16 30 H 0.09 0.16 8.08 -2.39 -0.02 0.14 16 31 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.10 2.27 8.11 -2.39 -0.02 2.25 16 34 H 0.05 1.96 5.59 -2.39 -0.01 1.95 16 35 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.10 2.84 4.79 -2.39 -0.01 2.83 16 37 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 42 H 0.08 4.91 5.15 -2.38 -0.01 4.90 16 43 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.12 3.75 7.06 -2.91 -0.02 3.72 16 45 H 0.17 0.71 6.34 -2.91 -0.02 0.69 16 Total: -1.00 -81.10 359.53 5.27 -75.83 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.00 Total: 15.32 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 4.55 Total: -8.62 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -2.20 Total: -85.04 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.11 Total: -44.48 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -81.10 5.27 -75.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.000 kcal (2) G-P(sol) polarization free energy of solvation -81.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds