Wall clock time and date at job start Tue Mar 31 2020 10:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86792 * 120.00328 * 2 1 4 4 H 1.48496 * 109.47205 * 266.13822 * 3 2 1 5 5 H 1.48507 * 109.46763 * 26.13452 * 3 2 1 6 6 H 1.48502 * 109.47188 * 146.13385 * 3 2 1 7 7 C 1.38891 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99960 * 341.43805 * 7 2 1 9 9 N 1.37133 * 120.00295 * 161.43752 * 7 2 1 10 10 C 1.34783 * 120.00249 * 145.38482 * 9 7 2 11 11 O 1.21282 * 120.00218 * 185.08376 * 10 9 7 12 12 C 1.50700 * 119.99791 * 5.08645 * 10 9 7 13 13 H 1.09001 * 109.55486 * 34.91155 * 12 10 9 14 14 C 1.53160 * 109.63651 * 274.65509 * 12 10 9 15 15 C 1.53046 * 109.40890 * 181.47070 * 14 12 10 16 16 O 1.43053 * 109.43880 * 59.32960 * 15 14 12 17 17 C 1.42579 * 113.84921 * 301.27039 * 16 15 14 18 18 C 1.53390 * 113.62702 * 188.22243 * 17 16 15 19 19 C 1.53849 * 86.98442 * 89.43337 * 18 17 16 20 20 C 1.53426 * 113.56544 * 286.14508 * 17 16 15 21 21 C 1.52820 * 112.93540 * 57.10671 * 17 16 15 22 22 C 1.39786 * 120.00206 * 325.38768 * 9 7 2 23 23 C 1.38958 * 120.07985 * 121.59836 * 22 9 7 24 24 C 1.38088 * 119.91842 * 179.70267 * 23 22 9 25 25 C 1.38309 * 120.08046 * 0.57525 * 24 23 22 26 26 C 1.38311 * 120.15150 * 359.72472 * 25 24 23 27 27 C 1.38080 * 120.07889 * 359.97438 * 26 25 24 28 28 H 0.96998 * 120.00160 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.48426 * 301.46106 * 14 12 10 30 30 H 1.09007 * 109.47914 * 61.49563 * 14 12 10 31 31 H 1.08995 * 109.48055 * 299.34489 * 15 14 12 32 32 H 1.08996 * 109.47737 * 179.31655 * 15 14 12 33 33 H 1.08997 * 113.62923 * 203.95768 * 18 17 16 34 34 H 1.09005 * 113.62484 * 334.90877 * 18 17 16 35 35 H 1.09000 * 113.60382 * 270.60246 * 19 18 17 36 36 H 1.08999 * 113.60584 * 139.72702 * 19 18 17 37 37 H 1.09009 * 113.62771 * 25.03009 * 20 17 16 38 38 H 1.08992 * 113.63298 * 155.98526 * 20 17 16 39 39 H 1.08997 * 109.56294 * 186.22301 * 21 17 16 40 40 H 1.08999 * 109.56221 * 65.88188 * 21 17 16 41 41 H 1.08000 * 120.03769 * 0.02562 * 23 22 9 42 42 H 1.08006 * 119.95638 * 180.30008 * 24 23 22 43 43 H 1.07999 * 119.91960 * 179.74150 * 25 24 23 44 44 H 1.08004 * 119.95411 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.03797 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.5775 1.9991 -1.3968 5 1 1.4072 2.6748 0.6167 6 1 3.5026 1.4650 0.7802 7 6 2.0087 -1.2028 0.0005 8 1 1.5108 -2.1137 0.2987 9 7 3.3265 -1.2340 -0.3775 10 6 4.1785 -2.0915 0.2186 11 8 5.3609 -2.0561 -0.0492 12 6 3.6620 -3.0945 1.2178 13 1 2.6689 -3.4295 0.9184 14 6 3.5887 -2.4485 2.6045 15 6 3.0986 -3.4817 3.6216 16 8 4.0002 -4.5921 3.6445 17 6 4.1470 -5.2415 2.3837 18 6 4.9530 -6.5447 2.4536 19 6 3.6177 -7.2611 2.7195 20 6 2.9340 -6.0934 1.9875 21 6 4.6127 -4.2958 1.2773 22 6 3.7863 -0.3763 -1.3810 23 6 4.8141 0.5199 -1.1143 24 6 5.2699 1.3614 -2.1098 25 6 4.6965 1.3211 -3.3678 26 6 3.6691 0.4346 -3.6350 27 6 3.2125 -0.4140 -2.6461 28 1 -0.4850 0.8400 -0.0004 29 1 4.5783 -2.0948 2.8936 30 1 2.8955 -1.6077 2.5777 31 1 2.1042 -3.8269 3.3387 32 1 3.0576 -3.0265 4.6111 33 1 5.4171 -6.8227 1.5073 34 1 5.6457 -6.5854 3.2943 35 1 3.3595 -7.3247 3.7766 36 1 3.5238 -8.2156 2.2017 37 1 2.0028 -5.7708 2.4535 38 1 2.8400 -6.2466 0.9125 39 1 4.6004 -4.8187 0.3210 40 1 5.6238 -3.9508 1.4936 41 1 5.2595 0.5547 -0.1310 42 1 6.0720 2.0548 -1.9045 43 1 5.0522 1.9833 -4.1433 44 1 3.2240 0.4056 -4.6186 45 1 2.4105 -1.1063 -2.8556 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888563858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:54 Heat of formation + Delta-G solvation = -22.064102 kcal Electronic energy + Delta-G solvation = -27566.584645 eV Core-core repulsion = 23936.019632 eV Total energy + Delta-G solvation = -3630.565013 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.56503 -39.63825 -37.75191 -35.93329 -34.99204 -33.25382 -32.15231 -30.33167 -29.41051 -29.22179 -25.70514 -25.53499 -24.82910 -23.04072 -22.31033 -21.95851 -20.62585 -18.96172 -18.83216 -17.85953 -16.66056 -15.95763 -15.91152 -15.57079 -15.40952 -14.84019 -14.63699 -14.20850 -14.10457 -13.83314 -13.59371 -13.34974 -12.99850 -12.89063 -12.73415 -12.64704 -12.29188 -12.26433 -12.10697 -11.36822 -11.24654 -11.09607 -10.99476 -10.75056 -10.72825 -10.65680 -10.57135 -10.53857 -10.23826 -10.02904 -9.70969 -9.35967 -9.21498 -8.71171 -8.50529 -8.27335 -7.61237 -6.59497 -4.23734 1.89984 2.00863 3.13420 3.25375 3.30349 3.51747 3.84334 4.09765 4.13543 4.39824 4.66037 4.74698 4.89287 4.91533 5.05268 5.25515 5.35454 5.44704 5.46627 5.49069 5.53347 5.66425 5.73434 5.75637 5.79648 5.80113 5.95411 6.01170 6.03957 6.10064 6.13007 6.17191 6.21278 6.23046 6.37169 6.41012 6.47303 6.60887 6.62863 6.73057 6.92395 7.06409 7.14299 7.26295 7.51593 7.59808 7.90258 8.14275 8.76799 9.15792 9.46388 10.48416 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.018012 B = 0.004718 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.114421 B = 5933.041956 C = 6590.888826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.080 3.920 3 Si 0.861 3.139 4 H -0.257 1.257 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.353 4.353 8 H 0.112 0.888 9 N -0.424 5.424 10 C 0.493 3.507 11 O -0.575 6.575 12 C -0.085 4.085 13 H 0.095 0.905 14 C -0.139 4.139 15 C 0.065 3.935 16 O -0.361 6.361 17 C 0.097 3.903 18 C -0.125 4.125 19 C -0.135 4.135 20 C -0.165 4.165 21 C -0.116 4.116 22 C 0.159 3.841 23 C -0.126 4.126 24 C -0.117 4.117 25 C -0.145 4.145 26 C -0.115 4.115 27 C -0.116 4.116 28 H 0.277 0.723 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.118 0.882 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.633 -6.093 1.663 7.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.129 4.129 3 Si 0.686 3.314 4 H -0.181 1.181 5 H -0.218 1.218 6 H -0.185 1.185 7 C -0.478 4.478 8 H 0.130 0.870 9 N -0.139 5.139 10 C 0.284 3.716 11 O -0.458 6.458 12 C -0.106 4.106 13 H 0.113 0.887 14 C -0.177 4.177 15 C -0.011 4.011 16 O -0.280 6.280 17 C 0.057 3.943 18 C -0.162 4.162 19 C -0.172 4.172 20 C -0.203 4.203 21 C -0.154 4.154 22 C 0.066 3.934 23 C -0.146 4.146 24 C -0.136 4.136 25 C -0.164 4.164 26 C -0.133 4.133 27 C -0.136 4.136 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.136 0.864 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.092 -6.067 1.734 8.108 hybrid contribution -0.124 1.226 -0.240 1.255 sum 4.967 -4.841 1.495 7.095 Atomic orbital electron populations 1.69722 1.06185 1.28519 1.44465 1.25212 0.95065 0.98445 0.94193 0.87104 0.80200 0.83276 0.80773 1.18116 1.21834 1.18467 1.19092 0.83648 0.96730 1.48341 0.87027 1.41541 1.09762 1.32933 1.29670 1.20560 0.85321 0.83924 0.81784 1.90576 1.16343 1.73788 1.65065 1.21023 1.00643 0.94161 0.94756 0.88676 1.21999 1.03023 0.99478 0.93207 1.22586 0.92513 0.86286 0.99720 1.87834 1.65510 1.45388 1.29299 1.22194 0.96133 0.91211 0.84779 1.22941 0.96954 0.93753 1.02576 1.22784 0.96352 0.97257 1.00807 1.23501 0.98544 0.97088 1.01123 1.21892 1.00306 0.95290 0.97874 1.17811 0.94483 0.92276 0.88833 1.21177 0.98428 0.95386 0.99653 1.20860 0.99988 0.99350 0.93357 1.20932 0.98231 1.00395 0.96809 1.20902 0.97316 0.96445 0.98684 1.21149 1.00963 1.00043 0.91440 0.91248 0.91416 0.88984 0.92742 0.88863 0.88976 0.90739 0.90058 0.91662 0.90936 0.89347 0.91057 0.90234 0.86326 0.86625 0.86809 0.86448 0.85478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.79 13.96 55.49 0.77 -22.02 16 2 C 0.08 2.05 5.27 -17.48 -0.09 1.96 16 3 Si 0.86 20.61 23.76 -169.99 -4.04 16.57 16 4 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -6.28 6.21 56.52 0.35 -5.93 16 7 C -0.35 -8.72 8.34 -14.94 -0.12 -8.85 16 8 H 0.11 2.82 6.50 -52.49 -0.34 2.48 16 9 N -0.42 -10.02 2.40 -58.98 -0.14 -10.16 16 10 C 0.49 11.13 6.61 -10.98 -0.07 11.06 16 11 O -0.58 -14.09 15.11 5.56 0.08 -14.01 16 12 C -0.08 -1.59 1.82 -91.53 -0.17 -1.76 16 13 H 0.10 1.81 6.44 -51.93 -0.33 1.47 16 14 C -0.14 -2.43 5.30 -26.63 -0.14 -2.57 16 15 C 0.07 0.97 6.73 37.18 0.25 1.22 16 16 O -0.36 -5.61 10.45 -35.23 -0.37 -5.98 16 17 C 0.10 1.40 1.03 -90.29 -0.09 1.30 16 18 C -0.12 -1.51 7.47 -26.09 -0.19 -1.70 16 19 C -0.13 -1.51 8.02 -25.85 -0.21 -1.71 16 20 C -0.16 -2.12 7.11 -26.07 -0.19 -2.31 16 21 C -0.12 -1.92 4.18 -26.66 -0.11 -2.04 16 22 C 0.16 3.66 2.49 -83.70 -0.21 3.46 16 23 C -0.13 -2.78 5.67 -39.37 -0.22 -3.00 16 24 C -0.12 -2.20 9.90 -39.61 -0.39 -2.60 16 25 C -0.14 -2.53 10.04 -39.53 -0.40 -2.93 16 26 C -0.11 -2.10 10.04 -39.61 -0.40 -2.50 16 27 C -0.12 -2.48 8.84 -39.37 -0.35 -2.83 16 28 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.09 1.73 7.58 -51.92 -0.39 1.34 16 31 H 0.05 0.78 7.21 -51.93 -0.37 0.41 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.95 7.26 -51.92 -0.38 0.57 16 38 H 0.09 1.10 8.02 -51.93 -0.42 0.68 16 39 H 0.07 1.15 8.04 -51.93 -0.42 0.73 16 40 H 0.08 1.44 7.70 -51.93 -0.40 1.04 16 41 H 0.12 2.70 7.57 -52.49 -0.40 2.30 16 42 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 43 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.12 1.77 8.06 -52.48 -0.42 1.34 16 45 H 0.13 2.69 8.06 -52.48 -0.42 2.27 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -28.81 350.07 -8.42 -37.22 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.89 Total: 8.91 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -3.11 Total: -15.80 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.63 Total: -32.18 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.28 Total: -19.99 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.04 Total: 16.57 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.81 -8.42 -37.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888563858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.159 kcal (2) G-P(sol) polarization free energy of solvation -28.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds